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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0379500 |
| Transcript ID | LotjaGi3g1v0379500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosyl hydrolase family 5 protein; TAIR: AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein; Swiss-Prot: sp|P23548|GUN_PAEPO Endoglucanase; TrEMBL-Plants: tr|A0A072TZ08|A0A072TZ08_MEDTR Hydrolyzing O-glycosyl compounds hydrolase; Found in the gene: LotjaGi3g1v0379500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77220341..77222851) extracted from Lotus japonicus Gifu genome v1.2.
GCAATGCTCAAAATAGGAACGAACTATTTGTTAGTGAAAATGAAATAAAACTGTTTCTTCCTCACAACAGAAAATTGTTT TACCTAATAGGATAGAGATTGTTTGCTCCTAATCCTTATCCAAGTTGAACATTTTCCTCTCTCTAATCTCTATATATAGA CACTATATCCATGATGAAAGTTGCAAGTTCTCTTCTACAGAGTCAATATGTTGGGAAATATGACTACACAATCCTTGTTT CTTCTTCTCCTTGTTTCCATTTTAGCATCACATTCCAATGCTTACCCTCTTTCAACCCAAGGCAGATGGATCATAGATGA ATCCACAGGGCAAAGAGCCAAACTTGTGTGTGCTAACTGGGCTGGTCACCTTCAGCCAATGATCCCTGAGGGTCTAGACA GAAGGCCATTGAAGGAGATTGTTTCTGAGCTTGTCAAACACAAATTCAACTGCGTTCGCCTCACCTATGCAATTTACATG TGGACACGCTATGGCGGTCACATTGTGAGTGGCACCTTCGATGGTTTGGATGTGCCGGAGGTGGTGGCTGGCATAGCCAA GAACAATCCTTCTGTGTTGAAAATGACACACATTCAGGTCTTTGAAGCTGTGGTTCATGAACTTGGTGCACAAAATGTGA AAGCTTTGCTTGATAACCATGTTAGTGAGCCAAAATGGTGCTGTAATGATGATGATGAGAATGGATTCTTTCATGACAGA CACTTTGATCCTCAGGAGTGGGTGCAGGGCCTTACTCTGGCAGCCAAGCACTTTGCAGGACATCACCCCGTATGTATTAT ATTGCTAATTGCTAACTATTGCATGTTTGGATGTTTGTCACAATTGATTTTGGATAAATTGATTATTTTAACATTGAAGT GAAGTGATTTAGTTTGGATACATTTGAGAAAAAATGTGATTTTTGTAAGACAATGTTAAAAAATCTAGTTGTAAAATCGC ACAAAGAAATCTGTCTTGTTTGATTAAGATCGGTGACATGTGAATTTAGGAATTCCCTGCTTGTAGAGAATCCCAATTTA ACCTACTTTCTAGTTTCTACCATGATTGATTTTTGGTCTAAAAAAAATTCTCCAAAACGACTCACAAACATATATATTAT CACCAAAATTGATTTTTTCCTCTATCAGAAGAGGAACCAAACACACACTAAACCTTTGTTTGTCTTAACTCTCTTTTCAA TTTTTACTAAATTGAATGTAGCATACCTTTTATTGATTTTCCAACCCTAACAGGTTGTGGCAATGAGCTTGAGGAATGAG TTGCATGGTCCACGCCAAAATCTGAATGATTGGTACAAGTACATGAGCCAAGCAGCACTGGCCATCCATAAATCAAATCC AAATGTGCTTGTGCTGATCTCAGGTTTGAACTATGACACTGAGTTGCAGTTTTTAAGGAACAAACCATTGAAGATTGACT TGGGTAAAAAATTGGTCTATGAGACACATTTGTACTCATGGTCTGGAATTGAAACACTCAAATTGAAAGAGATTTGGACC AAGCAACCATTGAACAGGATATGCTCCCAGAGCATTGAGGGGATAGACTACAGAGCTGGGTTCCTTACCAGTGGTAAGAA TGCAGCTCCTTTAATCTTCACTGAGTTTGGGTTTGACCAAACAGGTTCTTCAGTGGAAGACAACAGGTTCTTGACATGCC TTCAAACTTATCTTCTTGGAAGAGACTTGGATTGGGGTTTGTGGGCATTTCAAGGTGACTATTACATTAAACAGGACAAT GTTCAAGTTCAGGAGACATTTGGTGTACTGGATACCACTTGGCACAATCTGAGATACCCAAATTTCACTGCCAAGTTCCA ACTTTTGCAAAGGAAGAATCAAGGTAAGTCTGTTGAGTTATTTAATCAAATAGTTTGCAGGCATGTGAAGAAAAGCAAAT AATATCAATATCAACTTGCATTTTACTTGTGTTTTTTTTTATGCAGATCCTACTTCAAAAGCCCCCAATGCATATATCTT GTACCATCCACTAACTGGTCAATGTGTCAAAGTGAATAACAAGAATGAACTTGAAGTTGGTAGCTGTGAGAAGCCAAAAA GATGGGTTTATGGTGGAGATAGGTCTCAGGTTCTTTTGCATGATAACAAGAAGTGCATAACTGCATCTGGTGAAGGGCTT CCAGTTTCTGTTTCTGATGAGTGCCAGAGCAAGATCAGTTCTTGGAAATCTGTGTCCCTTTCTAAGCTTCATTTGGCTAC TAAGGATAAAGATGGGAAACAACTTTGCTTGCAGAAGGATTCCAATTCATCCAGGATTTTGACTTCAAAATGTATCTGCA TAGATGATGATTCTCAATGTCTGAATGATCCCCAAAGCCAGTGGTTCCAGCTTGTTGCCACTAATGTTTAGTTTGGTTTA GCTAAGTTTATGTTTTTTTTGTTTCTTCTAAAAATTGTTATCGCAATTCCAATTCCGACCTAGATGTGGTGGAAAGCAAA GGTTTCCAAATAATATGACTCATAAAAATCG
CDS sequence (LotjaGi3g1v0379500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGGAAATATGACTACACAATCCTTGTTTCTTCTTCTCCTTGTTTCCATTTTAGCATCACATTCCAATGCTTACCC TCTTTCAACCCAAGGCAGATGGATCATAGATGAATCCACAGGGCAAAGAGCCAAACTTGTGTGTGCTAACTGGGCTGGTC ACCTTCAGCCAATGATCCCTGAGGGTCTAGACAGAAGGCCATTGAAGGAGATTGTTTCTGAGCTTGTCAAACACAAATTC AACTGCGTTCGCCTCACCTATGCAATTTACATGTGGACACGCTATGGCGGTCACATTGTGAGTGGCACCTTCGATGGTTT GGATGTGCCGGAGGTGGTGGCTGGCATAGCCAAGAACAATCCTTCTGTGTTGAAAATGACACACATTCAGGTCTTTGAAG CTGTGGTTCATGAACTTGGTGCACAAAATGTGAAAGCTTTGCTTGATAACCATGTTAGTGAGCCAAAATGGTGCTGTAAT GATGATGATGAGAATGGATTCTTTCATGACAGACACTTTGATCCTCAGGAGTGGGTGCAGGGCCTTACTCTGGCAGCCAA GCACTTTGCAGGACATCACCCCGTTGTGGCAATGAGCTTGAGGAATGAGTTGCATGGTCCACGCCAAAATCTGAATGATT GGTACAAGTACATGAGCCAAGCAGCACTGGCCATCCATAAATCAAATCCAAATGTGCTTGTGCTGATCTCAGGTTTGAAC TATGACACTGAGTTGCAGTTTTTAAGGAACAAACCATTGAAGATTGACTTGGGTAAAAAATTGGTCTATGAGACACATTT GTACTCATGGTCTGGAATTGAAACACTCAAATTGAAAGAGATTTGGACCAAGCAACCATTGAACAGGATATGCTCCCAGA GCATTGAGGGGATAGACTACAGAGCTGGGTTCCTTACCAGTGGTAAGAATGCAGCTCCTTTAATCTTCACTGAGTTTGGG TTTGACCAAACAGGTTCTTCAGTGGAAGACAACAGGTTCTTGACATGCCTTCAAACTTATCTTCTTGGAAGAGACTTGGA TTGGGGTTTGTGGGCATTTCAAGGTGACTATTACATTAAACAGGACAATGTTCAAGTTCAGGAGACATTTGGTGTACTGG ATACCACTTGGCACAATCTGAGATACCCAAATTTCACTGCCAAGTTCCAACTTTTGCAAAGGAAGAATCAAGATCCTACT TCAAAAGCCCCCAATGCATATATCTTGTACCATCCACTAACTGGTCAATGTGTCAAAGTGAATAACAAGAATGAACTTGA AGTTGGTAGCTGTGAGAAGCCAAAAAGATGGGTTTATGGTGGAGATAGGTCTCAGGTTCTTTTGCATGATAACAAGAAGT GCATAACTGCATCTGGTGAAGGGCTTCCAGTTTCTGTTTCTGATGAGTGCCAGAGCAAGATCAGTTCTTGGAAATCTGTG TCCCTTTCTAAGCTTCATTTGGCTACTAAGGATAAAGATGGGAAACAACTTTGCTTGCAGAAGGATTCCAATTCATCCAG GATTTTGACTTCAAAATGTATCTGCATAGATGATGATTCTCAATGTCTGAATGATCCCCAAAGCCAGTGGTTCCAGCTTG TTGCCACTAATGTTTAG
Protein sequence (LotjaGi3g1v0379500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGNMTTQSLFLLLLVSILASHSNAYPLSTQGRWIIDESTGQRAKLVCANWAGHLQPMIPEGLDRRPLKEIVSELVKHKF NCVRLTYAIYMWTRYGGHIVSGTFDGLDVPEVVAGIAKNNPSVLKMTHIQVFEAVVHELGAQNVKALLDNHVSEPKWCCN DDDENGFFHDRHFDPQEWVQGLTLAAKHFAGHHPVVAMSLRNELHGPRQNLNDWYKYMSQAALAIHKSNPNVLVLISGLN YDTELQFLRNKPLKIDLGKKLVYETHLYSWSGIETLKLKEIWTKQPLNRICSQSIEGIDYRAGFLTSGKNAAPLIFTEFG FDQTGSSVEDNRFLTCLQTYLLGRDLDWGLWAFQGDYYIKQDNVQVQETFGVLDTTWHNLRYPNFTAKFQLLQRKNQDPT SKAPNAYILYHPLTGQCVKVNNKNELEVGSCEKPKRWVYGGDRSQVLLHDNKKCITASGEGLPVSVSDECQSKISSWKSV SLSKLHLATKDKDGKQLCLQKDSNSSRILTSKCICIDDDSQCLNDPQSQWFQLVATNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 6 | 538 | 533 | 0.0 | – | |
| PANTHER | 6 | 538 | 533 | 0.0 | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Gene3D | 25 | 394 | 370 | 3.3E-71 | – | |
| SUPERFAMILY | 25 | 382 | 358 | 1.23E-51 | ||
| Phobius | 26 | 538 | 513 | - | – | |
| Pfam | 67 | 352 | 286 | 1.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0379500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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