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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0382000 |
| Transcript ID | LotjaGi3g1v0382000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ripening related protein family; TAIR: AT5G56360.1 calmodulin-binding protein; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|A0A072TZD6|A0A072TZD6_MEDTR Ripening related protein family; Found in the gene: LotjaGi3g1v0382000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77523074..77523955) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGTTTCACACATCATCATCATTGAGAGACACAAGAAATCAAAAGACATGAAGACTCTAAAAATTTGTCCAAATTATT TTCAAACAATTCTCTTACTTCTAATTATTATTGTAGCAACCTTCTGGCTTAGCACTGAAGCTGCTGCCACCTGCAAACCC AGGGGAAGGTTAAGGGCAAAAAAACATCTTCCTAAACATTGCGGTGAGTGTTGCAAACCAGGCCATTTTTACACCACATT CAAGTGTTCCCCACAGGTATCTCACCACACAAAGGCAACACTAACACTGAATAGCTTTGCGAAAGGTGGGGATGGAGGTG GACCATCAGCATGTGACAACAAGTTTCACTCAGACAACACTCCTGTTGTAGCACTGTCAACTGGATGGTTCAATCATAGA AAACGGTGTCTTAAAAAAATCACCATCTTTGGAAATGGAAGAAGGGTCAAGGCCATGGTTGTTGATGAGTGTGACTCAAC TGATGGCTGTGATGGTGAGCATGGTTTCCAGCCTCCATGTCGGAACAATATAGTTGATGCTTCTAAGGCTGTTTGGAAGG CTTTGGAAGTTCCAGAAAATGATTGGGGTGAAATGGAAATTTTCTGGGCCGATGCTTGATGCACAATGTGTTAGAAATGA AGTTTTGATTTAATTGGAAAATAAAGGTTCCACCATGGTTACAAAATGAATGAAAGTTCATGATTTACTATGGTGCATTG TATTGTTTTAAGGGTTATCTATTATGTTTAGTTTTATAACTTCTTAGCTTTGTCAATTTCTTTGGTGCTTATTTAGTATT TTAATTGATGTGTTATGTATTGGTTTCTGATTACTCTATTATAAATGGAGTACTGTCTTATGGAAGTGAGACAAAATAAT AG
CDS sequence (LotjaGi3g1v0382000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTCTAAAAATTTGTCCAAATTATTTTCAAACAATTCTCTTACTTCTAATTATTATTGTAGCAACCTTCTGGCT TAGCACTGAAGCTGCTGCCACCTGCAAACCCAGGGGAAGGTTAAGGGCAAAAAAACATCTTCCTAAACATTGCGGTGAGT GTTGCAAACCAGGCCATTTTTACACCACATTCAAGTGTTCCCCACAGGTATCTCACCACACAAAGGCAACACTAACACTG AATAGCTTTGCGAAAGGTGGGGATGGAGGTGGACCATCAGCATGTGACAACAAGTTTCACTCAGACAACACTCCTGTTGT AGCACTGTCAACTGGATGGTTCAATCATAGAAAACGGTGTCTTAAAAAAATCACCATCTTTGGAAATGGAAGAAGGGTCA AGGCCATGGTTGTTGATGAGTGTGACTCAACTGATGGCTGTGATGGTGAGCATGGTTTCCAGCCTCCATGTCGGAACAAT ATAGTTGATGCTTCTAAGGCTGTTTGGAAGGCTTTGGAAGTTCCAGAAAATGATTGGGGTGAAATGGAAATTTTCTGGGC CGATGCTTGA
Protein sequence (LotjaGi3g1v0382000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTLKICPNYFQTILLLLIIIVATFWLSTEAAATCKPRGRLRAKKHLPKHCGECCKPGHFYTTFKCSPQVSHHTKATLTL NSFAKGGDGGGPSACDNKFHSDNTPVVALSTGWFNHRKRCLKKITIFGNGRRVKAMVVDECDSTDGCDGEHGFQPPCRNN IVDASKAVWKALEVPENDWGEMEIFWADA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| SignalP_EUK | 1 | 31 | 31 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 10 | 189 | 180 | 3.0E-92 | ||
| PANTHER | 10 | 189 | 180 | 3.0E-92 | – | |
| Phobius | 14 | 27 | 14 | - | – | |
| Phobius | 28 | 31 | 4 | - | – | |
| Phobius | 32 | 189 | 158 | - | – | |
| SUPERFAMILY | 67 | 187 | 121 | 1.5E-12 | ||
| Gene3D | 69 | 188 | 120 | 2.2E-16 | ||
| Coils | 187 | 189 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0382000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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