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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0382600 |
| Transcript ID | LotjaGi3g1v0382600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT3G61350.1 SKP1 interacting partner 4; Swiss-Prot: sp|Q9M2C9|SKIP4_ARATH F-box/kelch-repeat protein SKIP4; TrEMBL-Plants: tr|A0A072TN21|A0A072TN21_MEDTR SKP1 interacting partner 4; Found in the gene: LotjaGi3g1v0382600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77668498..77671469) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACTATCTTGGTGCATTTCTTATTTTTTTCTCATGTACTTCAATTATTTTTCCTGAAATCCCCTCTTATTTTTTTT TTCTCTGAGAAACTTCCAATCTCTTGAAAAAAGAAAAAAACGGAAATTGGGTGAGAAGCTATAAATCATCTCTAGTTCAT GGCTTCGTTGTTGTGCACTTCTAAGACGAATCCCTAGTTCCTTTCAGGTAACTTTCTCTTCTTCTCTAATTCAATTCCCA GAAATTAAAAATTCTGCCTTTTCTCTTTCACGCATTTGATCTTCCATTTCACTTCTGCAATCGTCAACCAATTTTTCAGG ATTTAGATCTGGAATTGCAATCATTGTTTTTAATTAACGTTGAATTGAATTTGGGGAAAAATTGGGGGATTGTAAAGGCG TGGTTTTTCTCAGTTCTTCGTCAATGTCAATGGGGTTGGGGTTTGCTTCTGCTTCTGTATTTGGTTTAGCCTTATAGCTC AATTTCTTCTATATGAAAGAAAAAAAATGAAATTGGGGGACAAGTGTTAAAAAAATAAAATGTGTTTTTTTGTTGTGTGT ATTTTGATTGTGTTATTAGTAGCACTAGCAGTAATGAAAATGATTGAGCAAGCTGTTGTAGACTTGTAGTTTAATGGTTT ATCCACTTATGGTTGATTTGTGGAAAGTTGTGATTTGTGAAGTCTGCTTATGTTTTACTTGTGGGATTTAGATGTAACTT GGACATGTTCTACTGTTTGAAAATATGATGCTTGAAGGGATGGAGTTAAAGAGCATTATGTCTGGTTAATATAGCTTGAT TAAAACAAGTTTGCTTTATCTGTTTAGGATGTCTGGTTGTGTGTTTTGAATCCTATGCCTGCAAATTGTGATGTGTAAAG AAAGTGATCAGCTTTCACATCATGCTTAAGTCACACGTGTTGCATTCCAAGGGGAACGGGAGGTTTTTTTCTTTTCGAAA AACTAGAAATGATAAACATTTGGAGGATGATATTTCGTTCCTCAATAGGTTAACTAAACACTGGTTAGCTTGCATATGAA TTTAGTCTGCAGGCTGTTTAGTGAGGGTTGTATTGAGCTGATTGAAGTGAATTCGAAAGGCCAAATCATATGATTATGCT CTATCTTGAAGTGAATATCAAGCCTTAAAATGTACGAAATCGTTCATGCAAAACTTGATCTTGTTTGTGTCTTGAGGTGA CATAACTTTTGGGGTCATAATGGCTATAGATGTTTGTTGTACAAGGTTCATACAGATGAGTTGAAAGTGCCCGTGAATTT AGGATTTGAGAAGTGCTTTACTGACTGACTTGTGCCCTTTTTTTTCAGGTCCTCTGCACTAATTCCTATGGAGCTTGTAA ATGATGGAACAGAATCATCAAATGGTGTTGATGAAGCTGAAATTACTAATTCTCCACTTATTCCTGGCCTTCCAGATGAT ATTTCTCTTGTGTGCCTGGCAAGAGTTCCTAGAAGATATCATCCAGTCCTGAAGTGTGTCTCAAAAAGATGGGGGGGTTT AGTTTGCAGTGAAGAGTGGGTTTATTATCGCAAAAAGCATAAACTTGATGAAACCTGGATCTATGCTTTGTGCAGGGACA CATTAGATAAACTTTTATGTTTTGTTCTGGATCCAACCTCCTCAAGAAAATGTTGGAAGCTCATTCGTGGGCTTCCACCT CGCACTATGAAAAGAAAAGGCATAGGTTTTGAAGCTTTGGGAAATAAGCTTTTCTTATTAGGTGGCTGTGGCTGGTCTGA AGGTGTTATTGATGAGGTTTACTCATACAATGCTTCCTTGAACTCTTGGGTTGAAGCTACTTCCTTGTCAACTGCTAGGT AAATATTCTCATGTTTATCACTTTGGAAAGCTAAGTTAGTCATGTTGTTGTTACTATCTATTTTGTTTGTCAATTTTCAT TGTCTATGTTCTGCTACTAAAAACTGAAATCACATAATGTCTTCATCTATCTTAATTTTAACCCCTACTGCAATGTAGAA GTCACTGTTTTCTTTTGCAAAAACTTTTAGGTGCTTCTTTGCTTGTGAAGTTTTGGATGAAAAACTGTATGCCATTGGTG GCATAGGTCAAAATTCAAGTGATTCTTGGGATACTTTTGACCCTTGCACAAATGGTTGGACATCTCGCAGAGATCCTAAT ATTATTCCTGAAGTTGAAGATTCAGTAGTTATGGATGGGAAGATATACATCCGATGTGGCAAATATCCTGTAACTCCTCA TGTGTATCTTGTGTATGAACCATCAAGCGATACATGGCAGCATGCAGATGCTGACATGGTTTCAGGATGGAGAGGTCCTG CAGCTGTTGTAGAGGGCGTCCTTTTTGTTTTGGATCAGCGTTCGGGTAGTCGGTTAATGATGTGGCATAAAGAGAGACGC GAGTGGATACCTGTTGGAAAGTTGTCACCATTGCTTACAAGACCACCCTGCCAGCTTGCTGCAGTTGGTAAAAGTATTTT TGTTGTTGGGAAAGGGCTTAGCACTGTGGTTGTTGATGTTGGTGATTTGGGGGATGTGGGACGGGTAATGACGGGTTCGT CTATACCCAAATTAGATTCTGATTACGATGTAATTAGTTGTAAATGTTTGGCAATCTGAATAGTAAATTGCTTCTGATGT TGTATTATTGTGTTGTTCTACATGTACAAATATTGCAAAATTCTTTCTTTTGTACACTGGTGGTATTAGGGTTTGAACTT GCTCTGTTGGACTCCATTATACTTATTTTGTACATTGCTACCCAAAAATATAAATCTCAACATTTTCTTAAGCTGTGCCA GAAAAGTTTCATGTCAGTACTAACGTTCTTTCTCCTGTGCTACTAGGCAATTGCATTTATGCCCAACTTTAATATTCTTC AAGATCATTTGATAAGCCACTTTGAATAGGTTAGCCATGGCATGATGGCAGCCTATCATTTCCTGTTATTTCTCTTGGTT CAATATGAATAA
CDS sequence (LotjaGi3g1v0382600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTGTAAATGATGGAACAGAATCATCAAATGGTGTTGATGAAGCTGAAATTACTAATTCTCCACTTATTCCTGG CCTTCCAGATGATATTTCTCTTGTGTGCCTGGCAAGAGTTCCTAGAAGATATCATCCAGTCCTGAAGTGTGTCTCAAAAA GATGGGGGGGTTTAGTTTGCAGTGAAGAGTGGGTTTATTATCGCAAAAAGCATAAACTTGATGAAACCTGGATCTATGCT TTGTGCAGGGACACATTAGATAAACTTTTATGTTTTGTTCTGGATCCAACCTCCTCAAGAAAATGTTGGAAGCTCATTCG TGGGCTTCCACCTCGCACTATGAAAAGAAAAGGCATAGGTTTTGAAGCTTTGGGAAATAAGCTTTTCTTATTAGGTGGCT GTGGCTGGTCTGAAGGTGTTATTGATGAGGTTTACTCATACAATGCTTCCTTGAACTCTTGGGTTGAAGCTACTTCCTTG TCAACTGCTAGGTGCTTCTTTGCTTGTGAAGTTTTGGATGAAAAACTGTATGCCATTGGTGGCATAGGTCAAAATTCAAG TGATTCTTGGGATACTTTTGACCCTTGCACAAATGGTTGGACATCTCGCAGAGATCCTAATATTATTCCTGAAGTTGAAG ATTCAGTAGTTATGGATGGGAAGATATACATCCGATGTGGCAAATATCCTGTAACTCCTCATGTGTATCTTGTGTATGAA CCATCAAGCGATACATGGCAGCATGCAGATGCTGACATGGTTTCAGGATGGAGAGGTCCTGCAGCTGTTGTAGAGGGCGT CCTTTTTGTTTTGGATCAGCGTTCGGGTAGTCGGTTAATGATGTGGCATAAAGAGAGACGCGAGTGGATACCTGTTGGAA AGTTGTCACCATTGCTTACAAGACCACCCTGCCAGCTTGCTGCAGTTGGTAAAAGTATTTTTGTTGTTGGGAAAGGGCTT AGCACTGTGGTTGTTGATGTTGGTGATTTGGGGGATGTGGGACGGGTAATGACGGGTTCGTCTATACCCAAATTAGATTC TGATTACGATGTAATTAGTTGTAAATGTTTGGCAATCTGA
Protein sequence (LotjaGi3g1v0382600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELVNDGTESSNGVDEAEITNSPLIPGLPDDISLVCLARVPRRYHPVLKCVSKRWGGLVCSEEWVYYRKKHKLDETWIYA LCRDTLDKLLCFVLDPTSSRKCWKLIRGLPPRTMKRKGIGFEALGNKLFLLGGCGWSEGVIDEVYSYNASLNSWVEATSL STARCFFACEVLDEKLYAIGGIGQNSSDSWDTFDPCTNGWTSRRDPNIIPEVEDSVVMDGKIYIRCGKYPVTPHVYLVYE PSSDTWQHADADMVSGWRGPAAVVEGVLFVLDQRSGSRLMMWHKERREWIPVGKLSPLLTRPPCQLAAVGKSIFVVGKGL STVVVDVGDLGDVGRVMTGSSIPKLDSDYDVISCKCLAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 359 | 355 | 8.8E-165 | – | |
| PANTHER | 5 | 359 | 355 | 8.8E-165 | – | |
| SUPERFAMILY | 20 | 64 | 45 | 2.35E-5 | ||
| Gene3D | 75 | 212 | 138 | 4.0E-22 | ||
| SUPERFAMILY | 89 | 320 | 232 | 1.23E-36 | ||
| Pfam | 116 | 161 | 46 | 2.6E-4 | ||
| Pfam | 163 | 201 | 39 | 8.3E-6 | ||
| Gene3D | 213 | 327 | 115 | 2.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0382600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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