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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0386400 |
| Transcript ID | LotjaGi3g1v0386400.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|K7MF03|K7MF03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0386400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78218677..78226877) extracted from Lotus japonicus Gifu genome v1.2.
CAAACAATCCCCAACATCCCCTATAAATACTTGACATAGCTTCAGTCTCCACATACACCTCAAACAAATACCAAAGTGCA TTTTCTTAGCATGAAGCTCTTGTGGAAAGCTCACATGAGGGTACAAGTGAGACCCTCTTCCCTCCCCTGCATTCTATCTA ATCTAAGAACCTGTTTGGATGCAAATTAAAGAGAACTTATTACACTTTATCTGGTCTTATAGATGCAATTTTTCCTGCAT ATACTCATAGAGCTATACAGAAAAATTCCTCAGCAAGATTGTAGAGCCACCTATACCTTCATTTTCTACCATTTCTTTTT CCCTCATGTGTGTTTACATTTTTCAGGTGATTAGATTGGTTTATGCTCTCCTTTTGGTGATTCTGCTGAGTTCAGATGTA GCTGAGAGCAGAAAATCCAAAACAGTCACCACATCATTTGTGTACAGTGCTATAAACTGCAGAGCACATAGTGCTTCATT GACAGATTTTGGTGGTATTGGGGATGGAAAGACATCTAATACAAAGGCCTTTCAATCTGCAATCAGTCACCTGAGTCAGT ATGCTTCTAAAGGAGGGGCTCAGTTGTATGTTCCTGCTGGGAAATGGCTTACTGGGAGCTTCAGTCTTACCAGCCACTTC ACACTTTACCTCAACAAAGATGCTGTTCTCCTTGCTTCTCAGGTATCTCATTTTTGTTCCATGTTTGATGAATAAGTAAT ATCAGAATAAGATTCAATACCTGGTTAAAATCCATTATATTTGTTTTGTTAATTCAGAATTGAGATTGATGATTAAACCT TGTCTGAAAATCCTTACAATCGATTCTAAAGCCAAAATTTATTCTGTGGAGAAATCTTTTTTGAGTTGTTTCTAGCTGCT AGAACTGATTGAGTAAAGAGAAGTTGATCCAAACATGCTATAAGCAACCACAAATGTCAGCTCACTTGTTTTATGTCCTC ACGCAGAATCTATTTTTTTCCTTACATATCTTCCCATCCTTACATAGTTACATGTTTTGCATTTTATGAACTATAAACTT AAAATCTTCCACAATTTTCTTCACTCCTTGTATAACTATCTACCCTTTAATTTCAAAAGTTACGTTATTGCTCATCCATA GCCTTTGAAGAAAGTGGAAAAAAGTTATCTTAATGATTGTAGTGTTTGAACTAATGTTGTTCCACCTAGTTGGCCTTATC TGGCTTTTCTGGCATCTTTCCTCTTGGCAGCATTTGGCTAGATCTACAAACAAAACAAGCAATAAATTAAGTTAGGAAGT GATGTTCCAAGCTTTCATTAGTTGCATGGTAGAAAACATAAAATGGGTATTTTGGACTTTCTTGACGAAAAATTGATGAC ATTTTCTTTGTTAAGTACTCTATCCACAATTGCTTAAGAATGCCATTACAAGCTGAAATAGAAGCTAAGTACTATCGCTA CCACAGACTCATGGCTCATTTATGAAAGTGGAAATATAAGTTTTTAAAGAGATTAACTTGAGTCACAAATGAGGTAACTT GTCCAATAAATGCAATACAAATTTGTCACAAGGTTCATCACTTCTTACTGCTACTAGTAAACTAGGTTATCAAAGCAATT TTGTTAAGTAACTCATGAAAGGAACTTAACATCTTCTGAACCTTTGAACCCCTAAAAACTGTTTATAGACACAGTAGATG ACAAATTGGGTTCCATAGGAAAATGAACCTAGTTTTTTTTTTCTGCCAGTGCCATGGTGAGGTCCAATGCACTGTTTTCT TTTGCTTACAGTTTCAAGTTTGACACAATTTTCGCACTTTCATGTGTAACCTTACTAAGTACATGTTTCAAAACGTGTTT GAATAATAACACTGTGAAGTTAAAATCACAGTGGACACTGTACATAAGTAACTTCTCTTAAACTTTGCTTGTCTATAATG ATTTTGACTTCATTGTGATCTTTAAACGAATTTCCAAACTAATTAGAGTTTCTCTTTGAATTGGTTTAGAATATTAGTGA GTGGCCTGTGATTGAACCACTCCCATCCTACGGTAGAGGAAGAGACGCAGCAGCAGGAAGATATACTAGCCTCATATTTG GAACAAACCTCACTGATGTTATTGTCACAGGTATGGAAAAGGAAAAAGTTGCACTTGTATGAAACAATTATCAAACAAGT AGTTAAGGGTTGGTGAAACAGTTTCACCTTTTCAGCAAACATGTGATACACATAGACAGTTTGAATTCCAATTCCCAAAA TTTACTAACCTCATTGAATATATTTTGTATCTAATCTTATGTTTGACTTAATTTTAATTTAATTTAACTTTATGATTAAA TTCACATTGAATTCAAAAAAAAAATCACATTTTATGAAATTATGACCATGGTGATAACAGGGGATAATGGCACCATAGAT GGTCAGGGAGCATTTTGGTGGCAGAAATTTCACAAGAAAAAGTTGAAGTACACTCGCCCGTACCTGATTGAGTTGATGTT CTCAGACAGCATTCAGATCTCCAATCTAACGCTTCTGAATTCCCCATCATGGAATGTCCATCCTGTTTATAGCAGGTAAA TCCTACCCTTTCATGTTGTGATCAAGTTTTAATTTAAAAGCCTTCAAAATCACATTTGACCTTTGTGACACTATATTTTT AACGCTATGAAATTCACCTCCAATGTCAAGGTTATAACAAATCTTCTAACGTTATGCAGCAATATTATAATTAAAGGCAT AACCATTATCGCTCCTGTCACATCCCCTAACACTGATGGCATCAACCCAGGTCAGTATGTTAGAGAGAGTAAACTAAGTT ATCACAGTTGTTAATTAAATTATACTTATATACTTGCAAGTGTTTAATAAACTATTAGTATGTTTGGATCAATTTTTTCT TCATCGGAATGAATTCTAAGACTCATAACATATTCACATAACTCTAGAATTGATTCCGACTTCAGAATCAATTGTAGAAA GATTTCTAAACATGCATTATGTTGTGTCTTTTAAATTTCAACATTTTGTCTCTCAATTTACTACTATGATGATTTACTTT ATCATGTAAAATGACTCTTTTAGTCCTGAAGAGCTAAATCCATTACTTGTGTATATCTTGGTATTGAGTGGAGTACCATT TTTGTCTGTTTTTTCTCTGGCATTAGATTCTTGTACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACT GTGTGGCAGTGAAGAGTGGGTGGGATGAATATGGCATAAAATTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTG ACATGCATTTCCCCATACAGTGCAACCATTGCCTTGGGAAGTGAGATGTCAGGTGGGATCCAAGATGTCAGAGCAGAGGA CATCACAGCCATCCACACAGAATCAGGCATCAGAATCAAGACAGCAGTAGGAAGAGGAGGGTATGTGAAGGACATATATG TCCAGAGAATGACCATGCACACAATGAAATGGGCATTTTGGATGACTGGGAACTATGGCTCCCATGCTGATAAGAACTAT GATCCTAATGCCTTGCCTGAGATCAAAGGCATCAACTACAGAGACATGGTAGCAGATGAAGTGACCATGGCTGGAAACTT GGAAGGAATTTCTAATGACCAGTTTACTGGAATCTGCATTGCCAATGTGACAATTAGTATGGCAGCCAAGTCCAAGAAAC AGCCTTGGACTTGCAGTGATGTTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTTGTTGCCTGATCAGGGG CCTGAGAAAATCACGACAACATGTGAATTTCCCACTGAGACTCTTCCCATTGATATGTTGGAACTTAAGAAATGTACTTC TAGCATTAAACTTCCATGAGCCATTTGTTAAGATGTATCCTGTAGCTTCTTATTAACTGTTAAATTGTTCTCCTGTTACC CAAAAATCCTTGTTCAAGTTCAAAAATGAATTGTATGGTAAATTATAGCAGTAACGAATTATATGTTAAATACTTGGTAG GAAAAGCTTTACAAATGTGTCTAACTTAATAAAAAAACACAAGCAGCAAACATGGAGATATTTTAGAATATTTTGAACAC TAACAAACCATTACATTTTATGTTTTGTGTATTTACCATGATCTAAACGATAGGAAACCTAGCAGCAACAGTTCATTGGT ATCTTATAAGAAAATGAACAATATCAAAGAGAAAAACGTATCTGGATGAAGAATTGTGAATAATTGACTAAAAATAGGAA TCTAGAAAATCTCCACAAGATCGATCAGAAGTTTACAAACAGAAAATAGAACCTAACAAATTATAAAATGACAACTGACC AACAATCTATCAAACTTCAAATATCCAGCCGTCATGAGTTATTCAAACTTAAATAATAACTGAAAATCAGTAAATCTAAA TTTGAACTTCTGCAAACAGCTACCAAGTCAAAGTATCAACTATCAACACTCCTTGAATCATTAGCTACAAAGTCAAAATT CACTTCGGGGAATGCTTCGATGAAAACTTCTTCCACTTGCTCTTCAGCTCTGCAATATTCCAAAGTTAGTTCTCCTACCT CTCTCAGCTTCTCTAAGAAAATAAAACTTGATCTTTGAATGCTTGGTCTTTCTATGAAACAATGGATTGTTGGAAATTGA TCTAACAGCTTAATTGTCAACAAAGAACTTCGTGTGCTCCATCTGCTCCATTTTCAAATCAAGCAACAATTTCTTGATCC ACAAGGATTGATTTACAACTGTTGTTGCAATAAATTCTACTTCTGTAGACTGAGCCATAACATCCGTCATCCTGCATTTC TTTAACTCCAAGAGAACATATATAACACCAAGGTAAAACAGTAGCTGAGGCCTTTTCATGTCATCAAGAGTTCCAAACTC AATTACTGTCTAAAATGTCTAGAAAACCATGAAAAAATGTAAGGTAAATTATGTTTTTGGTTCATGAAAATATCAATTTT TTTTGAATTAGTCACATTTTAATTATTTTCATCTGGTTTAGTCCTCACTTTTAACAGAATAAAGTTTTTGTTATCCTTAA TCAGCATTAGTTTAGGGACTAAGATCAGGCTATATTATATACATTGTCATCATGTATATATGTATATATATATATATAGA TGCTGTACACACGGTATTCGGATTAAGGTCATACAAGCTGGCTACAAACTACGGTAGGCGAAATTAAACTTAATATATAT TTCATTGTTTGACATCCCACTCCCACATATACTAACTTGAAATATAAAACTAAATAGTAAAAACACAACATTGAAAACCT CCCAACCTAACATTACCTACCAGTTAAGCTAACACATATTTAGTGCACTACTTGCTTAACTATGTTACGGCCAACTACAC GATCATTTACATTCTTATCATCAAACCTCATAGCAGATAGCAAAGTATCACGGCTAGTCAAAACTGCTTGGAAAAATCCA TCCACTTCCTTTGAAAGAAGATCCATTCCTTGGGAAAGCTTCTCTGTGGCCCCGCCTAATTCCTCAACAGTCTTCAGAAG TGATTCTGTCTCCATGGCATCACCACCACCGCCCTGGATAGTAGGATACAACTCCTTCACAACGGCATCAACAGTTTCCA ACTCACTCATTACAGAAAAATTCCCACTAGAAAATCTAACTCTAATCTCCTCATTTACAAGGTTCTGCAAACTTATAAAA GCTGGAGCCCATGAATAAACGTCAGCCACATCCAAATCTAACAACTTCTTTGAAGAGCCAGAGAATGCCGCAGTAAACAC ACTGCAAATAAATATAGTCTCCACCTTGACACTATACATGGCTTGCATCAAAACTTGACCTTTGGCAGAATTTTTAACCT TAGGAAGATCAAGTGATCCCACAAGATCATCTAAAATGCTGTGGCATTTTTCAATTCTAGGGTTCCTAGAATTAACTTGT TGCCTCCAATCATCAAGGAAAGAACAGGCCCGGACAAACAACTTTGAAGAGACAGAGTTCAAATTGTGCAATGCACACTT CAGAGGAAGATTACCTTGATTCAGCCTTGATAGCTCGGAACTAAATGCATTGCAAATATCTAACAACTTTGTACTTATGT CCAAGTACAGATCAATCCATTTGTCATCCCAATTACTCACAGGCAGCTCAAGATCTATTATAAGGGTTCGTATGTCATTA TGAGTTTCACAAAGTGACTTCATAGCTAGAGTCATCCAAGATAAGCTGAGGATTTCATCCTTGCTTTTGGGCATAAGTTT TCTGAGCCTCTCTGCCACTGTTGCCTCAAAAGCATGTAGTACTGCAAGAAGTTGTGGAGACTTGCGAGAGCCTTTAGGTG ATATCTTCCGAAAAGGATTTCCAAAAGGGAAGAAAGACCGGGGTGGATGTGGGTCCTGTGGACGGCTCATTATGGCAGCT GCAATACATAAGACATGTCAAACTTATAAGGTTTCAGTAGGGAACAAGGAAAATATAACATAATTGTAAACACAAATAGT AAATGAGTTGAAAAATCTTAACATATGATAATATTAAGTGTTATTTTGCACTGATATTTCATGCTACCAAAGACAGTGTT GAATAGTTACCCTTAACCACTCAAAACACTACTACTTCCCCCACCATATTTGTTTCTTTCAGAATTATGAAAAGCATTTT GCTCCATTTCACTATCCAAGCTGTAAGAACCATTAAAACCAATTTATACTAAAAAACAGAGGATTGATAGTAAATTGTGG CAAAGTCCAATGTTCCCAATCACAGAAGAGCACACAATGCAAATTAGGGTCATGCGAAAAAATCATATCAAGTGAATGAA AGTACTAAACTACAAATTGAACTGAATCAAACCTTAAATAACTTAATTTCTTGAAACTGGTTCTCTCTAATCCAGTTTAT TTAACTCCAGACAATCACGGTCATTACTTATTGACTACATAGTATATGGTTGAGTGAACCAATAGTTAACCGAACCAATA GTGTCCTAGAAGCCAGGTTAACAAGGAGACCCATGGTCATCCTTGTCATTTATCACATCAACATTGAAACTAACTTCTCA TTTCTCTGACACAAGATCCATGGTTGCCACCATCTTCATCATCAGTGTATTACTCTTCTCGTTCTAGCTTCCAGTTGCAG AATTAGCCACCTAAAAATTGAGGCAGAGCACTATGTATCTCAGTGAACCAGTGAAGGGGCCTGATCAAAAGAGTTGTTAT CACAGATCCAGCTCACTACCATGCCACTGTAGTGTATCAAAATACCCCTAACTTGTTCTCAGTAATTTTCCATCAAATTT TCCAATTTGAACCATGTAGAACTGGTTAACCAAACCAAAGAACCACTATAAGGTGGTTCGGTTATTTTCACAACACGAAA TCGAGTTCAGTTTAGTTCTCACCAAATAACTAAACCGCGCACACCCCACAAGGGAATTGAAAATTAGCAGCCAACTAACC AGATTTTCCCTAAAATAAGGTTTAAAAAATTATTGGGACCAAAACCCAGATAATGGACAGCTGTAGGAATCAGATCCAAC ATAGACTTTAAATAAAGTCACAAATAGGAAAATAAAAACCCAAGATCCATAAAAATAATTCCTTCTAACCCTCAATTTCT CATAATCCTGTTCAGATCTAAAACAAAAAACTTCAACAACAAGAGTAAAATTCAAACAGCGAATTATCAAAAATCCAGAA CTATAAAACTTAAACAACAAGAGCTAAATTCAAAGATCGAATAACCAACAACACAAGTCTCAAAAATTCATAATAAAAAA ACATAACAAAAAAAAGTCAACCCATCTAAACCTAGTCAAAAACTTCAGATCGACGAACTAAAATTCAATCAAAGTGAAAG ACAATCACCGATCATCAGATTAATAAACAAATTCATGCAAAAAATTAACAAAACCCCAATTCCAAATAATTTCGCGAAAT AAAAACCATGAGTTACTTTATTTGGAAGAAAACACCGAATCAAAGAGGAAAGGATGTTACCTGATAGATAGATGAATCGA AGAGAAGAGGGGGAAAAAGTTTTAGAGAGATTGAATAGCCGATGAGAACGGTTTCGTCTCTTTGAAGGGTTCGAATGTTA GGTGAGTGGTGTTCTTCGTTTTTGTGGTAGATAAAGAAAACGCGATTGTGATAAAACACGTGTGGTTATATCATTGGTCT GTTATCTATGTGATGGTAGTGGTACCGCTGTTTTAATTTTC
CDS sequence (LotjaGi3g1v0386400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCTTGTGGAAAGCTCACATGAGGGTGATTAGATTGGTTTATGCTCTCCTTTTGGTGATTCTGCTGAGTTCAGA TGTAGCTGAGAGCAGAAAATCCAAAACAGTCACCACATCATTTGTGTACAGTGCTATAAACTGCAGAGCACATAGTGCTT CATTGACAGATTTTGGTGGTATTGGGGATGGAAAGACATCTAATACAAAGGCCTTTCAATCTGCAATCAGTCACCTGAGT CAGTATGCTTCTAAAGGAGGGGCTCAGTTGTATGTTCCTGCTGGGAAATGGCTTACTGGGAGCTTCAGTCTTACCAGCCA CTTCACACTTTACCTCAACAAAGATGCTGTTCTCCTTGCTTCTCAGAATATTAGTGAGTGGCCTGTGATTGAACCACTCC CATCCTACGGTAGAGGAAGAGACGCAGCAGCAGGAAGATATACTAGCCTCATATTTGGAACAAACCTCACTGATGTTATT GTCACAGGGGATAATGGCACCATAGATGGTCAGGGAGCATTTTGGTGGCAGAAATTTCACAAGAAAAAGTTGAAGTACAC TCGCCCGTACCTGATTGAGTTGATGTTCTCAGACAGCATTCAGATCTCCAATCTAACGCTTCTGAATTCCCCATCATGGA ATGTCCATCCTGTTTATAGCAGCAATATTATAATTAAAGGCATAACCATTATCGCTCCTGTCACATCCCCTAACACTGAT GGCATCAACCCAGATTCTTGTACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTGGCAGTGAA GAGTGGGTGGGATGAATATGGCATAAAATTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTGACATGCATTTCCC CATACAGTGCAACCATTGCCTTGGGAAGTGAGATGTCAGGTGGGATCCAAGATGTCAGAGCAGAGGACATCACAGCCATC CACACAGAATCAGGCATCAGAATCAAGACAGCAGTAGGAAGAGGAGGGTATGTGAAGGACATATATGTCCAGAGAATGAC CATGCACACAATGAAATGGGCATTTTGGATGACTGGGAACTATGGCTCCCATGCTGATAAGAACTATGATCCTAATGCCT TGCCTGAGATCAAAGGCATCAACTACAGAGACATGGTAGCAGATGAAGTGACCATGGCTGGAAACTTGGAAGGAATTTCT AATGACCAGTTTACTGGAATCTGCATTGCCAATGTGACAATTAGTATGGCAGCCAAGTCCAAGAAACAGCCTTGGACTTG CAGTGATGTTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTTGTTGCCTGATCAGGGGCCTGAGAAAATCA CGACAACATGTGAATTTCCCACTGAGACTCTTCCCATTGATATGTTGGAACTTAAGAAATGTACTTCTAGCATTAAACTT CCATGA
Protein sequence (LotjaGi3g1v0386400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLWKAHMRVIRLVYALLLVILLSSDVAESRKSKTVTTSFVYSAINCRAHSASLTDFGGIGDGKTSNTKAFQSAISHLS QYASKGGAQLYVPAGKWLTGSFSLTSHFTLYLNKDAVLLASQNISEWPVIEPLPSYGRGRDAAAGRYTSLIFGTNLTDVI VTGDNGTIDGQGAFWWQKFHKKKLKYTRPYLIELMFSDSIQISNLTLLNSPSWNVHPVYSSNIIIKGITIIAPVTSPNTD GINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDITAI HTESGIRIKTAVGRGGYVKDIYVQRMTMHTMKWAFWMTGNYGSHADKNYDPNALPEIKGINYRDMVADEVTMAGNLEGIS NDQFTGICIANVTISMAAKSKKQPWTCSDVEGITSGVTPKPCNLLPDQGPEKITTTCEFPTETLPIDMLELKKCTSSIKL P
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 6 | 476 | 471 | 0.0 | – | |
| PANTHER | 6 | 476 | 471 | 0.0 | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 481 | 452 | - | – | |
| Gene3D | 30 | 438 | 409 | 1.7E-109 | ||
| SUPERFAMILY | 42 | 478 | 437 | 2.0E-102 | ||
| Pfam | 125 | 431 | 307 | 1.9E-38 | ||
| SMART | 220 | 246 | 27 | 450.0 | ||
| SMART | 247 | 268 | 22 | 27.0 | ||
| SMART | 309 | 330 | 22 | 3400.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0386400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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