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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0386400 |
| Transcript ID | LotjaGi3g1v0386400.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I1MKT0|I1MKT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0386400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78218987..78222541) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTTTTTCCCTCATGTGTGTTTACATTTTTCAGGTGATTAGATTGGTTTATGCTCTCCTTTTGGTGATTCTGCTGAG TTCAGATGTAGCTGAGAGCAGAAAATCCAAAACAGTCACCACATCATTTGTGTACAGTGCTATAAACTGCAGAGCACATA GTGCTTCATTGACAGATTTTGGTGGTATTGGGGATGGAAAGACATCTAATACAAAGGCCTTTCAATCTGCAATCAGTCAC CTGAGTCAGTATGCTTCTAAAGGAGGGGCTCAGTTGTATGTTCCTGCTGGGAAATGGCTTACTGGGAGCTTCAGTCTTAC CAGCCACTTCACACTTTACCTCAACAAAGATGCTGTTCTCCTTGCTTCTCAGGTATCTCATTTTTGTTCCATGTTTGATG AATAAGTAATATCAGAATAAGATTCAATACCTGGTTAAAATCCATTATATTTGTTTTGTTAATTCAGAATTGAGATTGAT GATTAAACCTTGTCTGAAAATCCTTACAATCGATTCTAAAGCCAAAATTTATTCTGTGGAGAAATCTTTTTTGAGTTGTT TCTAGCTGCTAGAACTGATTGAGTAAAGAGAAGTTGATCCAAACATGCTATAAGCAACCACAAATGTCAGCTCACTTGTT TTATGTCCTCACGCAGAATCTATTTTTTTCCTTACATATCTTCCCATCCTTACATAGTTACATGTTTTGCATTTTATGAA CTATAAACTTAAAATCTTCCACAATTTTCTTCACTCCTTGTATAACTATCTACCCTTTAATTTCAAAAGTTACGTTATTG CTCATCCATAGCCTTTGAAGAAAGTGGAAAAAAGTTATCTTAATGATTGTAGTGTTTGAACTAATGTTGTTCCACCTAGT TGGCCTTATCTGGCTTTTCTGGCATCTTTCCTCTTGGCAGCATTTGGCTAGATCTACAAACAAAACAAGCAATAAATTAA GTTAGGAAGTGATGTTCCAAGCTTTCATTAGTTGCATGGTAGAAAACATAAAATGGGTATTTTGGACTTTCTTGACGAAA AATTGATGACATTTTCTTTGTTAAGTACTCTATCCACAATTGCTTAAGAATGCCATTACAAGCTGAAATAGAAGCTAAGT ACTATCGCTACCACAGACTCATGGCTCATTTATGAAAGTGGAAATATAAGTTTTTAAAGAGATTAACTTGAGTCACAAAT GAGGTAACTTGTCCAATAAATGCAATACAAATTTGTCACAAGGTTCATCACTTCTTACTGCTACTAGTAAACTAGGTTAT CAAAGCAATTTTGTTAAGTAACTCATGAAAGGAACTTAACATCTTCTGAACCTTTGAACCCCTAAAAACTGTTTATAGAC ACAGTAGATGACAAATTGGGTTCCATAGGAAAATGAACCTAGTTTTTTTTTTCTGCCAGTGCCATGGTGAGGTCCAATGC ACTGTTTTCTTTTGCTTACAGTTTCAAGTTTGACACAATTTTCGCACTTTCATGTGTAACCTTACTAAGTACATGTTTCA AAACGTGTTTGAATAATAACACTGTGAAGTTAAAATCACAGTGGACACTGTACATAAGTAACTTCTCTTAAACTTTGCTT GTCTATAATGATTTTGACTTCATTGTGATCTTTAAACGAATTTCCAAACTAATTAGAGTTTCTCTTTGAATTGGTTTAGA ATATTAGTGAGTGGCCTGTGATTGAACCACTCCCATCCTACGGTAGAGGAAGAGACGCAGCAGCAGGAAGATATACTAGC CTCATATTTGGAACAAACCTCACTGATGTTATTGTCACAGGTATGGAAAAGGAAAAAGTTGCACTTGTATGAAACAATTA TCAAACAAGTAGTTAAGGGTTGGTGAAACAGTTTCACCTTTTCAGCAAACATGTGATACACATAGACAGTTTGAATTCCA ATTCCCAAAATTTACTAACCTCATTGAATATATTTTGTATCTAATCTTATGTTTGACTTAATTTTAATTTAATTTAACTT TATGATTAAATTCACATTGAATTCAAAAAAAAAATCACATTTTATGAAATTATGACCATGGTGATAACAGGGGATAATGG CACCATAGATGGTCAGGGAGCATTTTGGTGGCAGAAATTTCACAAGAAAAAGTTGAAGTACACTCGCCCGTACCTGATTG AGTTGATGTTCTCAGACAGCATTCAGATCTCCAATCTAACGCTTCTGAATTCCCCATCATGGAATGTCCATCCTGTTTAT AGCAGGTAAATCCTACCCTTTCATGTTGTGATCAAGTTTTAATTTAAAAGCCTTCAAAATCACATTTGACCTTTGTGACA CTATATTTTTAACGCTATGAAATTCACCTCCAATGTCAAGGTTATAACAAATCTTCTAACGTTATGCAGCAATATTATAA TTAAAGGCATAACCATTATCGCTCCTGTCACATCCCCTAACACTGATGGCATCAACCCAGGTCAGTATGTTAGAGAGAGT AAACTAAGTTATCACAGTTGTTAATTAAATTATACTTATATACTTGCAAGTGTTTAATAAACTATTAGTATGTTTGGATC AATTTTTTCTTCATCGGAATGAATTCTAAGACTCATAACATATTCACATAACTCTAGAATTGATTCCGACTTCAGAATCA ATTGTAGAAAGATTTCTAAACATGCATTATGTTGTGTCTTTTAAATTTCAACATTTTGTCTCTCAATTTACTACTATGAT GATTTACTTTATCATGTAAAATGACTCTTTTAGTCCTGAAGAGCTAAATCCATTACTTGTGTATATCTTGGTATTGAGTG GAGTACCATTTTTGTCTGTTTTTTCTCTGGCATTAGATTCTTGTACAAATACCAGAATTGAAGACTGCTACATAGTTTCT GGGGATGACTGTGTGGCAGTGAAGAGTGGGTGGGATGAATATGGCATAAAATTTGGATGGCCCACAAAACAACTAGTAAT CAGAAGGCTGACATGCATTTCCCCATACAGTGCAACCATTGCCTTGGGAAGTGAGATGTCAGGTGGGATCCAAGATGTCA GAGCAGAGGACATCACAGCCATCCACACAGAATCAGGCATCAGAATCAAGACAGCAGTAGGAAGAGGAGGGTATGTGAAG GACATATATGTCCAGAGAATGACCATGCACACAATGAAATGGGCATTTTGGATGACTGGGAACTATGGCTCCCATGCTGA TAAGAACTATGATCCTAATGCCTTGCCTGAGATCAAAGGCATCAACTACAGAGACATGGTAGCAGATGAAGTGACCATGG CTGGAAACTTGGAAGGAATTTCTAATGACCAGTTTACTGGAATCTGCATTGCCAATGTGACAATTAGTATGGCAGCCAAG TCCAAGAAACAGCCTTGGACTTGCAGTGATGTTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTTGTTGCC TGATCAGGGGCCTGAGAAAATCACGACAACATGTGAATTTCCCACTGAGACTCTTCCCATTGATATGTTGGAACTTAAGA AATGTACTTCTAGCATTAAACTTCCATGAGCCATT
CDS sequence (LotjaGi3g1v0386400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGTTTACATTTTTCAGGTGATTAGATTGGTTTATGCTCTCCTTTTGGTGATTCTGCTGAGTTCAGATGTAGCTGA GAGCAGAAAATCCAAAACAGTCACCACATCATTTGTGTACAGTGCTATAAACTGCAGAGCACATAGTGCTTCATTGACAG ATTTTGGTGGTATTGGGGATGGAAAGACATCTAATACAAAGGCCTTTCAATCTGCAATCAGTCACCTGAGTCAGTATGCT TCTAAAGGAGGGGCTCAGTTGTATGTTCCTGCTGGGAAATGGCTTACTGGGAGCTTCAGTCTTACCAGCCACTTCACACT TTACCTCAACAAAGATGCTGTTCTCCTTGCTTCTCAGAATATTAGTGAGTGGCCTGTGATTGAACCACTCCCATCCTACG GTAGAGGAAGAGACGCAGCAGCAGGAAGATATACTAGCCTCATATTTGGAACAAACCTCACTGATGTTATTGTCACAGGG GATAATGGCACCATAGATGGTCAGGGAGCATTTTGGTGGCAGAAATTTCACAAGAAAAAGTTGAAGTACACTCGCCCGTA CCTGATTGAGTTGATGTTCTCAGACAGCATTCAGATCTCCAATCTAACGCTTCTGAATTCCCCATCATGGAATGTCCATC CTGTTTATAGCAGCAATATTATAATTAAAGGCATAACCATTATCGCTCCTGTCACATCCCCTAACACTGATGGCATCAAC CCAGATTCTTGTACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTGGCAGTGAAGAGTGGGTG GGATGAATATGGCATAAAATTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTGACATGCATTTCCCCATACAGTG CAACCATTGCCTTGGGAAGTGAGATGTCAGGTGGGATCCAAGATGTCAGAGCAGAGGACATCACAGCCATCCACACAGAA TCAGGCATCAGAATCAAGACAGCAGTAGGAAGAGGAGGGTATGTGAAGGACATATATGTCCAGAGAATGACCATGCACAC AATGAAATGGGCATTTTGGATGACTGGGAACTATGGCTCCCATGCTGATAAGAACTATGATCCTAATGCCTTGCCTGAGA TCAAAGGCATCAACTACAGAGACATGGTAGCAGATGAAGTGACCATGGCTGGAAACTTGGAAGGAATTTCTAATGACCAG TTTACTGGAATCTGCATTGCCAATGTGACAATTAGTATGGCAGCCAAGTCCAAGAAACAGCCTTGGACTTGCAGTGATGT TGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTTGTTGCCTGATCAGGGGCCTGAGAAAATCACGACAACAT GTGAATTTCCCACTGAGACTCTTCCCATTGATATGTTGGAACTTAAGAAATGTACTTCTAGCATTAAACTTCCATGA
Protein sequence (LotjaGi3g1v0386400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCVYIFQVIRLVYALLLVILLSSDVAESRKSKTVTTSFVYSAINCRAHSASLTDFGGIGDGKTSNTKAFQSAISHLSQYA SKGGAQLYVPAGKWLTGSFSLTSHFTLYLNKDAVLLASQNISEWPVIEPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTG DNGTIDGQGAFWWQKFHKKKLKYTRPYLIELMFSDSIQISNLTLLNSPSWNVHPVYSSNIIIKGITIIAPVTSPNTDGIN PDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDITAIHTE SGIRIKTAVGRGGYVKDIYVQRMTMHTMKWAFWMTGNYGSHADKNYDPNALPEIKGINYRDMVADEVTMAGNLEGISNDQ FTGICIANVTISMAAKSKKQPWTCSDVEGITSGVTPKPCNLLPDQGPEKITTTCEFPTETLPIDMLELKKCTSSIKLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| PANTHER | 4 | 473 | 470 | 0.0 | – | |
| PANTHER | 4 | 473 | 470 | 0.0 | – | |
| Phobius | 11 | 21 | 11 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 478 | 452 | - | – | |
| Gene3D | 27 | 435 | 409 | 1.7E-109 | ||
| SUPERFAMILY | 39 | 475 | 437 | 2.0E-102 | ||
| Pfam | 122 | 428 | 307 | 1.8E-38 | ||
| SMART | 217 | 243 | 27 | 450.0 | ||
| SMART | 244 | 265 | 22 | 27.0 | ||
| SMART | 306 | 327 | 22 | 3400.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0386400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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