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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0388400 |
| Transcript ID | LotjaGi3g1v0388400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant hydroxyproline-rich glycoprotein; TAIR: AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q6DST1|Y1465_ARATH Late embryogenesis abundant protein At1g64065; TrEMBL-Plants: tr|V7ANA6|V7ANA6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0388400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78519485..78521443) extracted from Lotus japonicus Gifu genome v1.2.
CACGAGTGTATTAAAAAATAGAATCAAATGCCTACCTTATACGTTACTCCATAATACAGGGCTTAAATTTTTCTCCTGAT CATTCGTATTTCATAAGATTACTAGCACAGAATATAAACCTATCTAAGCTTATATAATATTCATATAGGCAAATGCTAAC ATTTAGTTCGCATCTTTATCATAGTATATCAAAAGACAAATACTATAGCACTTGTGATTGGCCTACGTGTCTACCTCTAA GCTCTATTTATCGCACTTGTTACTTGTTAGCAAGTCCCAATCGCTTACCCAAAAAAAGCAAGTCCCCATCAAATACACCA CAAGTGGACAAAGTACAAACGCAGAAAATACAGGTCGATCAAGTTTAGTCAACAAAACCTTAGAATTTCAGCACCAATGC ACACATTCCTGGTCTTTACTACTACCAAAAGTCAAGCAACGTTATGCAAAATTAATGGACCCAACTCCTACCTACATCTC CATATAGATACAAAATTAGTCAATTTCACACTTCCACTTCCTAGGCTTCAAGACCATAAATAAACCAAAGCAAGCCGATC AAAACATAACAGAACGGAACAGAACAGAATAACCCCAGTTTCAATCTCCACAACTTCACCTGAATTTCACGGTTTAGATC CTAGTAATCCATGGCGGAGAAAAAGGAGCAAGCTACACCCCTAGCCTCAGCAATAGAGAATCCAAATCCAAGAACCAACG GTGAAGAAGACACCACTCAGCTGTCTCAGCACCACCACCAGAAACTTTCTCGTAGACATTTCATCAAACGGTTTGCATGC CCACTAGTTTTTCTCCTGCTTCTAGCAGTAGTAATCATAGTTCTAATCTTCACCGTGTTTCGGATCAAGAACCCTGTAAT CAAAATGAACAGCATCCAAATCACAAATCTCAACCTCACCAACATCGTGGCCGCAAAACCCGGTGTGAACCTCTCCGTAA TCGCAGACGTTTCGGTGAAAAACCCAAACGCGGCGTCGTTCAGGTACAGCAACACCACCACGTCGCTGTACTACCGCGGC GTGATGGTGGGGGAGGCGAGAGGGCCGCCGGGAAGGGCCAAGGCTGGCCGGACGATCAGGATGAATCTGACGGTGGATGT GATCACGGATCGGATCAATTTGTCGAGTTCAGATTTGAGGAACGATTTGAGTTCTGGGGTGTTGACTATGAACAGCTTCT CGAGGGTACCTGGGCAGGTGAAGATATTGAACTTGTTTAAGAAACATGTTGTTGTGAAAATGAACTGTTCCACCACTTTC AATGTTACTACTAGGGAAATTCAAGAACAGAATTGTAAGAGGAAGGTTAAAATTTAGTGACACTTGTGTGTTAGTTTTGT TGTCTAATTATTGTACCAAAAGTAAGGAGATTTTCCGTTCTTTGTATGTGTTTCAGTTTTGAAATTTTTGGTTGATTGTT TTGCTTTTTTATTTAGATGAGAAATTAGAATTGCTTATTTGTGTTGTAAGTTTGGATGAGCGTTTGTATAATTGATTCTA GCAGAATTGAGTATTGTAAAAATGAGTTAAAGTGACGTGATTTATGTTTGGATACATCTCTGAAGTTGTCGGGGTGGCTC GAGTTGATGATGTTGTGGTGATTCTTAGGGGTCGTGTCAGGGTTGGTGGAGAAGTGGTTGCTATGAGACAAAGATTGATG CGACAACTCTCATGGTTTACAGTGTTGTACAGATGGCCGAGGATAGGGTACTTTCAGGAAGGAAGGTGGCAGTGACTCTA TTTGGTGGATAAATTTCAGAAATGGAGTGTAAATTGGTTGAGTTTTGCTTGAATAGGTCTGACCGACTAAAAAAAATTAA TGCTTTAGCTTGATCGGTTACCTGTCATAGATTTCCTTTCAGTAAATAGGTCACCTACCCATTTTTAAAGAAGTTTATAT GGTTAGATCTTTTTTTTTTTGAAAAGTGGTTAGATCCTT
CDS sequence (LotjaGi3g1v0388400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGAAAAAGGAGCAAGCTACACCCCTAGCCTCAGCAATAGAGAATCCAAATCCAAGAACCAACGGTGAAGAAGA CACCACTCAGCTGTCTCAGCACCACCACCAGAAACTTTCTCGTAGACATTTCATCAAACGGTTTGCATGCCCACTAGTTT TTCTCCTGCTTCTAGCAGTAGTAATCATAGTTCTAATCTTCACCGTGTTTCGGATCAAGAACCCTGTAATCAAAATGAAC AGCATCCAAATCACAAATCTCAACCTCACCAACATCGTGGCCGCAAAACCCGGTGTGAACCTCTCCGTAATCGCAGACGT TTCGGTGAAAAACCCAAACGCGGCGTCGTTCAGGTACAGCAACACCACCACGTCGCTGTACTACCGCGGCGTGATGGTGG GGGAGGCGAGAGGGCCGCCGGGAAGGGCCAAGGCTGGCCGGACGATCAGGATGAATCTGACGGTGGATGTGATCACGGAT CGGATCAATTTGTCGAGTTCAGATTTGAGGAACGATTTGAGTTCTGGGGTGTTGACTATGAACAGCTTCTCGAGGGTACC TGGGCAGGTGAAGATATTGAACTTGTTTAAGAAACATGTTGTTGTGAAAATGAACTGTTCCACCACTTTCAATGTTACTA CTAGGGAAATTCAAGAACAGAATTGTAAGAGGAAGGTTAAAATTTAG
Protein sequence (LotjaGi3g1v0388400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEKKEQATPLASAIENPNPRTNGEEDTTQLSQHHHQKLSRRHFIKRFACPLVFLLLLAVVIIVLIFTVFRIKNPVIKMN SIQITNLNLTNIVAAKPGVNLSVIADVSVKNPNAASFRYSNTTTSLYYRGVMVGEARGPPGRAKAGRTIRMNLTVDVITD RINLSSSDLRNDLSSGVLTMNSFSRVPGQVKILNLFKKHVVVKMNCSTTFNVTTREIQEQNCKRKVKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 47 | 47 | - | – | |
| PANTHER | 4 | 225 | 222 | 1.0E-76 | – | |
| PANTHER | 4 | 225 | 222 | 1.0E-76 | – | |
| MobiDBLite | 12 | 27 | 16 | - | – | |
| Phobius | 48 | 70 | 23 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| SUPERFAMILY | 56 | 161 | 106 | 4.71E-7 | – | |
| Phobius | 71 | 228 | 158 | - | – | |
| Pfam | 107 | 207 | 101 | 9.7E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0388400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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