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LotjaGi3g1v0388400.1

Overview

Field Value
Gene ID LotjaGi3g1v0388400
Transcript ID LotjaGi3g1v0388400.1
Lotus japonicus genome version Gifu v1.2
Description Late embryogenesis abundant hydroxyproline-rich glycoprotein; TAIR: AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q6DST1|Y1465_ARATH Late embryogenesis abundant protein At1g64065; TrEMBL-Plants: tr|V7ANA6|V7ANA6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0388400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:78519485..78521443) extracted from Lotus japonicus Gifu genome v1.2.

CACGAGTGTATTAAAAAATAGAATCAAATGCCTACCTTATACGTTACTCCATAATACAGGGCTTAAATTTTTCTCCTGAT CATTCGTATTTCATAAGATTACTAGCACAGAATATAAACCTATCTAAGCTTATATAATATTCATATAGGCAAATGCTAAC ATTTAGTTCGCATCTTTATCATAGTATATCAAAAGACAAATACTATAGCACTTGTGATTGGCCTACGTGTCTACCTCTAA GCTCTATTTATCGCACTTGTTACTTGTTAGCAAGTCCCAATCGCTTACCCAAAAAAAGCAAGTCCCCATCAAATACACCA CAAGTGGACAAAGTACAAACGCAGAAAATACAGGTCGATCAAGTTTAGTCAACAAAACCTTAGAATTTCAGCACCAATGC ACACATTCCTGGTCTTTACTACTACCAAAAGTCAAGCAACGTTATGCAAAATTAATGGACCCAACTCCTACCTACATCTC CATATAGATACAAAATTAGTCAATTTCACACTTCCACTTCCTAGGCTTCAAGACCATAAATAAACCAAAGCAAGCCGATC AAAACATAACAGAACGGAACAGAACAGAATAACCCCAGTTTCAATCTCCACAACTTCACCTGAATTTCACGGTTTAGATC CTAGTAATCCATGGCGGAGAAAAAGGAGCAAGCTACACCCCTAGCCTCAGCAATAGAGAATCCAAATCCAAGAACCAACG GTGAAGAAGACACCACTCAGCTGTCTCAGCACCACCACCAGAAACTTTCTCGTAGACATTTCATCAAACGGTTTGCATGC CCACTAGTTTTTCTCCTGCTTCTAGCAGTAGTAATCATAGTTCTAATCTTCACCGTGTTTCGGATCAAGAACCCTGTAAT CAAAATGAACAGCATCCAAATCACAAATCTCAACCTCACCAACATCGTGGCCGCAAAACCCGGTGTGAACCTCTCCGTAA TCGCAGACGTTTCGGTGAAAAACCCAAACGCGGCGTCGTTCAGGTACAGCAACACCACCACGTCGCTGTACTACCGCGGC GTGATGGTGGGGGAGGCGAGAGGGCCGCCGGGAAGGGCCAAGGCTGGCCGGACGATCAGGATGAATCTGACGGTGGATGT GATCACGGATCGGATCAATTTGTCGAGTTCAGATTTGAGGAACGATTTGAGTTCTGGGGTGTTGACTATGAACAGCTTCT CGAGGGTACCTGGGCAGGTGAAGATATTGAACTTGTTTAAGAAACATGTTGTTGTGAAAATGAACTGTTCCACCACTTTC AATGTTACTACTAGGGAAATTCAAGAACAGAATTGTAAGAGGAAGGTTAAAATTTAGTGACACTTGTGTGTTAGTTTTGT TGTCTAATTATTGTACCAAAAGTAAGGAGATTTTCCGTTCTTTGTATGTGTTTCAGTTTTGAAATTTTTGGTTGATTGTT TTGCTTTTTTATTTAGATGAGAAATTAGAATTGCTTATTTGTGTTGTAAGTTTGGATGAGCGTTTGTATAATTGATTCTA GCAGAATTGAGTATTGTAAAAATGAGTTAAAGTGACGTGATTTATGTTTGGATACATCTCTGAAGTTGTCGGGGTGGCTC GAGTTGATGATGTTGTGGTGATTCTTAGGGGTCGTGTCAGGGTTGGTGGAGAAGTGGTTGCTATGAGACAAAGATTGATG CGACAACTCTCATGGTTTACAGTGTTGTACAGATGGCCGAGGATAGGGTACTTTCAGGAAGGAAGGTGGCAGTGACTCTA TTTGGTGGATAAATTTCAGAAATGGAGTGTAAATTGGTTGAGTTTTGCTTGAATAGGTCTGACCGACTAAAAAAAATTAA TGCTTTAGCTTGATCGGTTACCTGTCATAGATTTCCTTTCAGTAAATAGGTCACCTACCCATTTTTAAAGAAGTTTATAT GGTTAGATCTTTTTTTTTTTGAAAAGTGGTTAGATCCTT 

CDS sequence (LotjaGi3g1v0388400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAGAAAAAGGAGCAAGCTACACCCCTAGCCTCAGCAATAGAGAATCCAAATCCAAGAACCAACGGTGAAGAAGA CACCACTCAGCTGTCTCAGCACCACCACCAGAAACTTTCTCGTAGACATTTCATCAAACGGTTTGCATGCCCACTAGTTT TTCTCCTGCTTCTAGCAGTAGTAATCATAGTTCTAATCTTCACCGTGTTTCGGATCAAGAACCCTGTAATCAAAATGAAC AGCATCCAAATCACAAATCTCAACCTCACCAACATCGTGGCCGCAAAACCCGGTGTGAACCTCTCCGTAATCGCAGACGT TTCGGTGAAAAACCCAAACGCGGCGTCGTTCAGGTACAGCAACACCACCACGTCGCTGTACTACCGCGGCGTGATGGTGG GGGAGGCGAGAGGGCCGCCGGGAAGGGCCAAGGCTGGCCGGACGATCAGGATGAATCTGACGGTGGATGTGATCACGGAT CGGATCAATTTGTCGAGTTCAGATTTGAGGAACGATTTGAGTTCTGGGGTGTTGACTATGAACAGCTTCTCGAGGGTACC TGGGCAGGTGAAGATATTGAACTTGTTTAAGAAACATGTTGTTGTGAAAATGAACTGTTCCACCACTTTCAATGTTACTA CTAGGGAAATTCAAGAACAGAATTGTAAGAGGAAGGTTAAAATTTAG 

Protein sequence (LotjaGi3g1v0388400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEKKEQATPLASAIENPNPRTNGEEDTTQLSQHHHQKLSRRHFIKRFACPLVFLLLLAVVIIVLIFTVFRIKNPVIKMN SIQITNLNLTNIVAAKPGVNLSVIADVSVKNPNAASFRYSNTTTSLYYRGVMVGEARGPPGRAKAGRTIRMNLTVDVITD RINLSSSDLRNDLSSGVLTMNSFSRVPGQVKILNLFKKHVVVKMNCSTTFNVTTREIQEQNCKRKVKI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 34 34 -
Phobius 1 47 47 -
PANTHER 4 225 222 1.0E-76
PANTHER 4 225 222 1.0E-76
MobiDBLite 12 27 16 -
Phobius 48 70 23 -
TMHMM 48 70 23 -
SUPERFAMILY 56 161 106 4.71E-7
Phobius 71 228 158 -
Pfam 107 207 101 9.7E-14

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0388400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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