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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0388700 |
Transcript ID | LotjaGi3g1v0388700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|I3SP67|I3SP67_LOTJA Reticulon-like protein; Found in the gene: LotjaGi3g1v0388700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78544658..78547141) extracted from Lotus japonicus Gifu genome v1.2.
CCTCGACCACATCAAAACCCAAACGCCGTTCTCTGCTACCAGATTCAAATTTCTCCCGAACCTCAGCTTCGGAATCCAAA CCTCGAAATCACAACACTATAAATTCCCACACCGAGATTCTCGCCCAAACCTCCCAGCATCACTCACATACACACACACT CTTCTCGCTACTCGCCCCCGATCCGAAAGGGCAAACGAAAATCTCTCATCTCCGTACTCGCATTAGGGTTTGAAAATGGC GGAGGAATCGGCGGAGAGCACGGTCACGACGGCGGCGACCGGTGAATCGCTTCTTGACAAGATCAGCGACAAGCTTCACG GTCACGATTCTTCCTCCGATTCCGATTCCGAGAAACCCTCCCTTTCTTCCGTTAAGCAGAAGATTTTCCGCCTTTTCGGT AGGGAGAAGCCCCTCCATTCCGTCCTCGGCGGCGGAAAGCGTATGAATCTCTCTCTCTACTCTGTTTGCTTGTGATTCTC GTAGATCTATGATCGGTGAAATGTAGATTTTGAATACTGCATTTTGTTAAATCACAATTTTAGGTCCGGTTTGGAAAAAC AGCTTAATTAAGCGCGTGCTTATTCATAAGCTATTTTAAAAAGTTTATGGAAATAAATTGAAAATAAGTTCTATGTTCAT AAGCTATTATGAAAATAAGCTCAAAACAGCTTATGCTATCAGATAAGCTCAAATAAGCTCTTCCAAACGGGACCTTAATC AGTTAAGATCTTCTATTTGGAATTCATTTTACTGTGATGATCTGATTCTTATTTTCACTGCTAAAACTGTTGATTTGAAT CTTACTTTATTGGTTCATGATTCACAGATTGAGAAAGAGAGTTTCAATTTTTTCAATTGGTTTTAATTGCAGCTGCTGAT GTTCTGTTGTGGAAGAACAAGAAGGTATCTGCTGGTGCACTTGGAGTAGCTACTGCTGTTTGGCTCTTTTTTGAGCTGCT TGAATACCATCTTCTTACTCTAGTGTGTCACATTTTGATTCTTTCGATTACGCTTTTGTTTTTGTGGTCCAATGCTCATA CCTTACTTCACAAGTGAGATTCTGTAACTTTTTAATCTGTTGTAGTTGTTTGTGTGCTTTGTGTTTTTGTCTAAACATTT TGCATGTAATGTTGAATGATGTTGTAGGGCTCCGCCTCGCATTCCTGTGTTTCATCTTCCTGAAGAGCCGTTTCTGGAAA TTGCGTCTGCATTGAGAATTGAGATCAATCACGGGTTTGCTGCATTGCGTGATATTGGTACTGGAAAAGATGTGAAGAAA TTCCTCATTGTATGTAACTTGCAAACATCTAGTTCATTACTTCATTGCATGTCAGATTTTTGTTTTGCTTACTTAAGATA TTAGGTGTGCTAAGTGCTAATTACCTTTAATCTTCCTAAGACATTGCTTGTGATTTTAAAACCACTATGACTACAATTTG ATGTGCCCATGATTCCTAATTTATTGTTAGTGTAGCTTTCATGAGGAACTGAACTATTGCTATCATGTTATTGTCTTTTG CTGAGGATTTTGTTGTTGATGTTGTGTTAGGCTATTGTTGGCTTGTGGATTCTATCCATTGTGGGGAGTTGGTGCAATTT CTTGACTCTGTTCTACATAAGTAAGAATAATTTATACTCATTTCTTACATATATTTTAGAAGTTATGAACTATGAAACTT TATTGATTGTCAATGGTTTTCTTTTGCAGATTTTGTTCTGTTGCTCACAATTCCTTTCTTGTATGACAAGTATGAGGATA AGATAGACCCTCTGGCTGAGAAGGCAGCCCATGAGATTAAGAAGCAGTATGTGGTGTTTGATGCAAAGGTCTTGAGTAAG GTCTTGAGTAAGATTCCAAAAGGTCTATTGAAGGGGAAGTTAGCTTAGTGTTCAAGGATTTGTGTACTTTTGTGAAAGAG AAAGAACAAAAAAAAGCTCCACTTGAGTATTTTTAAATACAGGAGCCTCTTTCTGTTACCACCATATACCAAGTGTTGTT TTGGGGTTGTTTCTAGGCCTGGTTTGATATTCATACTCATGGGTTTAGCTTCATGATGTAGTGTTAATTTTTTGCTACAG GCGCCTGGATTTTATTGGCTGCAGTGTTGGATTCCTTGTAGTCATTCAGTCAGTGGCTGTTGTAAGCTAAAAATATTAAT ATGTTAAGGTTGTTTTTATAAAATTGCTTAGTTTTTCTTTCTATGTTGCATGCCGGGAAGAATGTTTTGAAGTACACTCA TATTCATGTTTCATATCAAGGAAAAGGGCATCTAAATTTTGAGGAATGCTTGACACTATTATTTGTTGAAACTAATGTGA TTAAGAGTAGGGTGGATGTGATTTATGATGATTGATTGAATAGCTTTTTTTTTGTTACAAGAGAAAATGATTATGAGAAT AGCTTAATTTAGTTTTTATGCCCAAAAGTATTTATTACTTAAATGTTACTAATTTTTAAATTTATTTGGGAAGTGTAAGC CAAG
CDS sequence (LotjaGi3g1v0388700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGGAATCGGCGGAGAGCACGGTCACGACGGCGGCGACCGGTGAATCGCTTCTTGACAAGATCAGCGACAAGCT TCACGGTCACGATTCTTCCTCCGATTCCGATTCCGAGAAACCCTCCCTTTCTTCCGTTAAGCAGAAGATTTTCCGCCTTT TCGGTAGGGAGAAGCCCCTCCATTCCGTCCTCGGCGGCGGAAAGCCTGCTGATGTTCTGTTGTGGAAGAACAAGAAGGTA TCTGCTGGTGCACTTGGAGTAGCTACTGCTGTTTGGCTCTTTTTTGAGCTGCTTGAATACCATCTTCTTACTCTAGTGTG TCACATTTTGATTCTTTCGATTACGCTTTTGTTTTTGTGGTCCAATGCTCATACCTTACTTCACAAGGCTCCGCCTCGCA TTCCTGTGTTTCATCTTCCTGAAGAGCCGTTTCTGGAAATTGCGTCTGCATTGAGAATTGAGATCAATCACGGGTTTGCT GCATTGCGTGATATTGGTACTGGAAAAGATGTGAAGAAATTCCTCATTGCTATTGTTGGCTTGTGGATTCTATCCATTGT GGGGAGTTGGTGCAATTTCTTGACTCTGTTCTACATAAATTTTGTTCTGTTGCTCACAATTCCTTTCTTGTATGACAAGT ATGAGGATAAGATAGACCCTCTGGCTGAGAAGGCAGCCCATGAGATTAAGAAGCAGTATGTGGTGTTTGATGCAAAGGTC TTGAGTAAGGTCTTGAGTAAGATTCCAAAAGGTCTATTGAAGGGGAAGTTAGCTTAG
Protein sequence (LotjaGi3g1v0388700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEESAESTVTTAATGESLLDKISDKLHGHDSSSDSDSEKPSLSSVKQKIFRLFGREKPLHSVLGGGKPADVLLWKNKKV SAGALGVATAVWLFFELLEYHLLTLVCHILILSITLLFLWSNAHTLLHKAPPRIPVFHLPEEPFLEIASALRIEINHGFA ALRDIGTGKDVKKFLIAIVGLWILSIVGSWCNFLTLFYINFVLLLTIPFLYDKYEDKIDPLAEKAAHEIKKQYVVFDAKV LSKVLSKIPKGLLKGKLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 255 | 255 | 5.8E-124 | – | |
PANTHER | 1 | 255 | 255 | 5.8E-124 | – | |
Phobius | 1 | 79 | 79 | - | – | |
ProSiteProfiles | 69 | 258 | 190 | 43.43 | ||
Pfam | 70 | 225 | 156 | 1.2E-54 | ||
Phobius | 80 | 95 | 16 | - | – | |
Phobius | 96 | 100 | 5 | - | – | |
TMHMM | 98 | 120 | 23 | - | – | |
Phobius | 101 | 120 | 20 | - | – | |
Phobius | 121 | 170 | 50 | - | – | |
Phobius | 171 | 187 | 17 | - | – | |
TMHMM | 174 | 196 | 23 | - | – | |
Phobius | 188 | 192 | 5 | - | – | |
Phobius | 193 | 211 | 19 | - | – | |
Phobius | 212 | 258 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0388700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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