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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0397000 |
| Transcript ID | LotjaGi3g1v0397000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT3G61830.1 auxin response factor 18; Swiss-Prot: sp|Q9C5W9|ARFR_ARATH Auxin response factor 18; TrEMBL-Plants: tr|I1MKH9|I1MKH9_SOYBN Auxin response factor; Found in the gene: LotjaGi3g1v0397000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79833186..79838855) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTTTAAATAGTGTCCAATGGAGAATAAGTAGCAGTAGTAGGCTAAGCTGAATCTATAGACTAGAGGACCACAACTCT ATATAGACTCTAGGGAGAAAGAGAAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAAATGAAACAAACAAGTTCCC AATTTCTCAAACAAAAATAGAGACAGAGAGTGAGAGCAAGAGAGAGAGCATTGCATTATATGAGGCAGCAGCTGATAAAG GCAACAACCTTGGCAAGTTGGTAACGTGGATTCAGTTCTTTTGGGGGAAACAATCAACGACAACGACAGCAGCAAAAGGA GAAGACCCAGAAGAGCTTTCACCTTTCAAACCTCACAAGGCTTTCAAAAAGTGATCTTGGAGCTTCAAAGTGAAGGAAAA AAGTGATCTTTGATTCTTCAGAGACCAACATCTTCAAGACCAAGACAAAGATAACAAAAGCTGAGGTAGCAGCAGGAACC ACCACTGTAACCGAAACTTGAGGCAGCACCCTCCATTTATTACAGAGAAGAAGAAGCTCAAAGGATAGAGAAACCACTCA GTTAATTATCATTACTAGCATTTAACTGTTGTTATGTGTGGTTGGTGCTTTCTCTCTCATGGGTACTTGATGGGGTAATA ATCCTATTGTGCTTCTGAGTGAAGGAGCTGAAAAAGTTGTTGGCTTTGGCTTTGGTTTGCTGTTGGGTGTTTTTGTTTTC TTGTTGGTATTTTTGTGGCAGGAAGTGGTTTTCTGTGACTGTTGAATGGCACATCTGGAGTGTAGCCTCAGGGGTCAGGG GAGTTCTCAGCCAGGAAAAGGTCAATGGGTTGTGTGTGGAATTTCATTTTGGATTTCTCTTTGTTTGGTTTCTGAGAAAG TGTAGCAACAAAAGGGAAATGCTTGTGTTTTTTTAGCAATTGCTGATTTTGTTGTTAAATGAAATTGGGAATTGAATGAA TGCCCCTTTTTCCTTGTGAACATGGAGGTAACTGGGGATGAGCTTAGAAGAAAAATGGAAGTGAAAAGTTGTTAACTTTC TCAGAAACCATTCAAGGGGCATCAAGCTTCAGTTCTTATTCTTATTTGTTTTCATCTTGTGTTTTGCAGGTTTGAAAGAT GATGATCTGTATAGAGAGCTATGGAGGTTGTGTGCAGGACCATTGGTGGATGTTCCTCAAACTGGAGACAGAGTTTTCTA CTTCCCTCAGGGTCACATGGAACAAGTATGCATCTTTTTCCTTGGCCTTTTTTGGTTGCCATTTTTGGGTTGGAGTTGCC TTCAAAATTTTCATCCAAAAATGAACACTTTCCTTATTGTACTTGCATGCTGGACTTTTTGGTCTTCTGGGTAATTTTTA TTTTTTTGTTGCTGCAGCTGCAAGCATCTACGAATCAGGAATTGAACCAGGAAATTCCCCATTTCAATTTACCGTCTAAG ATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGGTACTGTTGTTTGATTCCTTTTGTTGTTGTCACTTGTCTTGTTCTTT TTGTTGTTAAAATGATGAGATGGGTGTGTTTATAATAGAATCTTGTTAATTTTTGTAGGCGGAGCAAGACACTGATGAGG TTTACGCTTGTGTCGCTTTGCTTCCAGAATCAGATGTGAGAATATGTGTTTCCTTTTTCCTTTTATGGTTTTGTCTTGTC GACGATCTGTTTGGTTACTAAGAGAATGAGATACATTCTGCTTTATCATTTTCTCAGCTACTGAAAGAGAGAGAGAAATA AATTGCAATTTAATTTAATCTTGGGGTGTTTTCTTTTGTGGCTTACAGCAAACTGAGCCTGAAAATCTTGATCTAACTCC TTCCGAAGCTCCGAAAGATAAATTTCACTCATTTTGCAAAATATTAACAGCATCTGATACTAGCACACATGGAGGATTTT CCGTTCTGCGGAAGCATGCTACTGAGTGCCTTCCTCCATTGGTATTTAGCTCTCTGGGTTTTCTTTTTAGCTGTGGCTGA ATCTATATATTAAACTAAGAAGAAATCAAAATTCCTGAATTCAAAGACTTTCTGTTTATATATTGCAGGACATGAGCCAG GCAACTCCAACTCAGGAGTTGGCAGCGAATGATCTTCATGGATTTGAATGGAAGTTTAAGCATATATATAGAGGTAAATT AGTTTCTATAGCGGGGGCAAACCCAGCTCCGCCTATGTTTTTTCATAGCTGGTCCTAAGCCCGGATAAAGGAGGAAGGTT GTCTTTGGCTTTCGGCAGCCAACTTAAAACTTGCCGCTATCTTTAATATGGATATGTGATCCACATGCAAATCCATAAAG CCGACCTCACCTAGAGGGATAAGGCTTTATTTTTGCATTGAATGAGGATACTGTGTTTATAATTCTCATATCTGTTTTGT TGCTGAGAATCTTGCTTGTCCCTTTCATTTATGTGGTGGTCAGGTCAACCAAGGAGGCATTTGCTTACAACTGGCTGGAG TACATTTGTCGCATCCAAAAGATTGGTTGCTGGAGATGCTTTTGTTTTCTTAAGGTATTTAATTTTGATGCTTTGTATGA TTTCCTTCTTTCAAGGTTAGGCCTTCCACTGAAGTTCTCTTCACTTTGGTCTTGATTTGATTGTTGCAGAGGAGAGCATG GGCAACTGAGAGTCGGCGTGAGGCGTTTAGCTCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATG CATCTTGGAGTGCTTGCCACTGCTTCCCACGCTGTTATGACTCGTACCATGTTCTTGGTTTATTACAAACCAAGGTTTGC AATTTTTTTGAATTGTATTATAGATGGTGTCATTAGCTTATAATCCAACAGTGTGTGTAGCTTTAAACTTTTCCTTAAAC ATACCTATTGATCAATTCAGGACTAGCCAGTTTATTGTTGGTTTGAACAAGTATCTGGAGGCACTCAAGAACAACTTTTC AGTTGGCATGCGTTTCAAGATGAGATTTGAAGGAGAGGACTCACCTGAGAGAAGGTATCCATGTAGATAGTTATTGTGCT CAGATAGTGTCCCCTTCTCTGCAAATTTGTATTCATTGCTGTGTAATTATTTTGTCAGATTTTCTGGTACTATTGTGGGG GTTGGGGATGTGTCTCAAGGATGGTTGAATTCTCAGTGGCGGTCATTGAAGGTTGAACTTTACTCTAATTAGCCATCTGA ACTCTTTTTTCTGTTAATTTTGGACTCTAAATTTGGGCATTTACAATTTTTGCCCCTTAGGTTCAATGGGATGAACCGGC AACGATCCAAAGGCCGGACAGAGTTTCTTTTTGGGAGGTAGAGCCTTTCATGCCTTCTCCGGCTCTGAATGTCGCTCAAC CAACAGTGAAGGGCAAGAGGTTTAGACCTGTTGATATTTCATCTTCTGGTAGGAGACTATTGTCCTTAAGTTTTCATAAT GAAATGTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTTAACGGGTGTAAACTCATTCGGGAAACTGTAACAATCCGACTT TCCTGGGATTCAAACTTGTTTATTGAAATGTTTATTGGCTGCACATTAACTGGTTTTAGATACTATTTCCTACACTGGTG CTTCAGGTTTCTGGTATCAAGGATCTTCCCAGGCTCATGAGCTTACCCAATTTGGTGGTGGTGGTGCTGAAGTCCAAAGC AAGGAAAATCAGATTGTGAGCTCTCTTAGGCAGAATGACATTAGTAGCAACCCTATCAAGACTAGCTCCAGAATATGGCC TTGTTCACCACATTTGAATGTCACTTCCAACTTTTTTTCTGATCCCAAAATCAAAGGGGTTAAATTACAATCATCAACCA TCTCTAGTTATGCTTATGTTTCATCTAGACCAATTGATGGCCCCACATGTGTGGAAGATGATGGGAAGAAGAGTGAGAAT CCCCTAGATTGTTGGTTATTTGGTGTTAATTTGAGTAACAACTCTAGCAATGGCATCGCTTGTTTGGAGAAAGAACTGGG ATGTTCATGTCCAACTACTGTTCCTAGTGGTCCCAACGAATCTAATCCTGCTGGTGCATGTGAAACTGAGAGGGTCCAGA GTCCTGACTTTTCACTGTCCAACAAGGGGCAGAGCCAAATAATTTCTGAGGCATCACCAATTGAGTGGCAGAAGAAGCAG GCCTCTGTGACTGTACCAGCCATGAGGACTAGGACTAAGGTACATTTTCAGCTTTCAATGCAATAATTTAAGATTCCTTT CATAGGAGGAAGGTCAATTAATGTAGAAGAGAAGGAAATTTGTTATACTTAAAAAAAAAACGTGGCCAATGGTATGTAAG TAACATTCTACAAACTTTTCCATCCTACTCTTAATATTTAATACAACCTTAGAATTTGGGTTAGACCCTCAAAATGTAGT CTTAATAGGTCTTAGAATTTGGGTTAGGTCTAACTCTAACCCAAAAGCTAGCTTAGAGATAAGAATTGCTCTACCCTTTA TGAAAGTTTATTTGACTATATCTCTAGCCAATGTGAGACTTCTAAACAACATTCCCTCACATCCAGAGCTGAACATTAGG AGCAGAAATTTACAGTTTTGGCATAATTTTTTTGGGGGGAAATTTCCATGATACGTTTAGGGATGCTAACTTCATTTTGT TGTTGTTTGAGAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGCGCAATTGACTTGGCCACATTGAGTGGCTATGATAAT CTCATAGATGAGGTTGAGAAGTTGTTTGATATTAAAGGAGAGCTGCGTTTGCAAAACAAATGGGCTGTAACTTTCACTGA TGATGAAAATGACATGATGCTCGTCGGTGATGATCCATGGCCGTGAGTAACATGAATCTCGGTTACACACACTTTTTTCA GTTTTCTGTTTCTTTTAACTGTGTTTAATCTTGTTGGTTACATGTAGGGAGTTCTGCTCCATGGTGAGGAGGATTTACAT TTGCACAAGGGAGGAGTTGAAGAAGATGAAATGCAAGCTACCTGCTACTTCATCAGAGGTTGTTGAAGAGACTCTGTTGA GCCCAGATTCACAAATTAGGGATGAGGCTCAGCAATCTCACATGCCTTGATGACAACTTAACTTGTTACCTTTTTTTAGT TTTGAGAGGGTTGGGTAGCTGATGGTATGGGTTATGGAACTCTCAACAACTTCTGAGTAGTGGACTAGTAGTTAAAAAAA TGGAAGTTGAGTTGGATTTTAGGTACTCTATATTTGTGAATACCTCTGTTTTTCTTTTTCTGACAGTACCATCAGCTTGT AAACAAGTACTATGTTTTTCCCCATCTAGTAGATTGCTGGTCTGTGATGTGTGGAATGCGCTTAATATATTAGTGTGTTT GGTTAGCAAAAGGAAAATGTTGTGTTGATGCTCTTTTCACCTACACTTTTAGAAAGATATAGAAGTGAGAAATAAGAGAT ATGATGAGTGATGTGATAAGAATAGAAGAGAGATACAAAGAAAAATGGACTGAAAATAAATTGTATGAGAAGCTTAAGTG TGAATATATCAAGATTGAAAATGTTAACAAAATAATGTTTGATTCATCCTTATCATACATAGTCATCCAAAATCTAAACA ATACACCTCTCATATACCTAAATTTTCTTAGTCTCTTTTTGTTACATCATATATTCCTTCACACTCTTAT
CDS sequence (LotjaGi3g1v0397000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACATCTGGAGTGTAGCCTCAGGGGTCAGGGGAGTTCTCAGCCAGGAAAAGGTTTGAAAGATGATGATCTGTATAG AGAGCTATGGAGGTTGTGTGCAGGACCATTGGTGGATGTTCCTCAAACTGGAGACAGAGTTTTCTACTTCCCTCAGGGTC ACATGGAACAACTGCAAGCATCTACGAATCAGGAATTGAACCAGGAAATTCCCCATTTCAATTTACCGTCTAAGATTTTT TGCCGTGTTGTGAACATTCAGTTGTTGGCGGAGCAAGACACTGATGAGGTTTACGCTTGTGTCGCTTTGCTTCCAGAATC AGATCAAACTGAGCCTGAAAATCTTGATCTAACTCCTTCCGAAGCTCCGAAAGATAAATTTCACTCATTTTGCAAAATAT TAACAGCATCTGATACTAGCACACATGGAGGATTTTCCGTTCTGCGGAAGCATGCTACTGAGTGCCTTCCTCCATTGGAC ATGAGCCAGGCAACTCCAACTCAGGAGTTGGCAGCGAATGATCTTCATGGATTTGAATGGAAGTTTAAGCATATATATAG AGGTCAACCAAGGAGGCATTTGCTTACAACTGGCTGGAGTACATTTGTCGCATCCAAAAGATTGGTTGCTGGAGATGCTT TTGTTTTCTTAAGAGGAGAGCATGGGCAACTGAGAGTCGGCGTGAGGCGTTTAGCTCGGCAGCAGAGTCCTATGCCTTCA TCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCACGCTGTTATGACTCGTACCATGTTCTT GGTTTATTACAAACCAAGGACTAGCCAGTTTATTGTTGGTTTGAACAAGTATCTGGAGGCACTCAAGAACAACTTTTCAG TTGGCATGCGTTTCAAGATGAGATTTGAAGGAGAGGACTCACCTGAGAGAAGATTTTCTGGTACTATTGTGGGGGTTGGG GATGTGTCTCAAGGATGGTTGAATTCTCAGTGGCGGTCATTGAAGGTTCAATGGGATGAACCGGCAACGATCCAAAGGCC GGACAGAGTTTCTTTTTGGGAGGTAGAGCCTTTCATGCCTTCTCCGGCTCTGAATGTCGCTCAACCAACAGTGAAGGGCA AGAGGTTTAGACCTGTTGATATTTCATCTTCTGGTTTCTGGTATCAAGGATCTTCCCAGGCTCATGAGCTTACCCAATTT GGTGGTGGTGGTGCTGAAGTCCAAAGCAAGGAAAATCAGATTGTGAGCTCTCTTAGGCAGAATGACATTAGTAGCAACCC TATCAAGACTAGCTCCAGAATATGGCCTTGTTCACCACATTTGAATGTCACTTCCAACTTTTTTTCTGATCCCAAAATCA AAGGGGTTAAATTACAATCATCAACCATCTCTAGTTATGCTTATGTTTCATCTAGACCAATTGATGGCCCCACATGTGTG GAAGATGATGGGAAGAAGAGTGAGAATCCCCTAGATTGTTGGTTATTTGGTGTTAATTTGAGTAACAACTCTAGCAATGG CATCGCTTGTTTGGAGAAAGAACTGGGATGTTCATGTCCAACTACTGTTCCTAGTGGTCCCAACGAATCTAATCCTGCTG GTGCATGTGAAACTGAGAGGGTCCAGAGTCCTGACTTTTCACTGTCCAACAAGGGGCAGAGCCAAATAATTTCTGAGGCA TCACCAATTGAGTGGCAGAAGAAGCAGGCCTCTGTGACTGTACCAGCCATGAGGACTAGGACTAAGGTGCAAATGCAAGG TGTTGCTGTTGGTCGCGCAATTGACTTGGCCACATTGAGTGGCTATGATAATCTCATAGATGAGGTTGAGAAGTTGTTTG ATATTAAAGGAGAGCTGCGTTTGCAAAACAAATGGGCTGTAACTTTCACTGATGATGAAAATGACATGATGCTCGTCGGT GATGATCCATGGCCGGAGTTCTGCTCCATGGTGAGGAGGATTTACATTTGCACAAGGGAGGAGTTGAAGAAGATGAAATG CAAGCTACCTGCTACTTCATCAGAGGTTGTTGAAGAGACTCTGTTGAGCCCAGATTCACAAATTAGGGATGAGGCTCAGC AATCTCACATGCCTTGA
Protein sequence (LotjaGi3g1v0397000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHLECSLRGQGSSQPGKGLKDDDLYRELWRLCAGPLVDVPQTGDRVFYFPQGHMEQLQASTNQELNQEIPHFNLPSKIF CRVVNIQLLAEQDTDEVYACVALLPESDQTEPENLDLTPSEAPKDKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLD MSQATPTQELAANDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRLARQQSPMPS SVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEALKNNFSVGMRFKMRFEGEDSPERRFSGTIVGVG DVSQGWLNSQWRSLKVQWDEPATIQRPDRVSFWEVEPFMPSPALNVAQPTVKGKRFRPVDISSSGFWYQGSSQAHELTQF GGGGAEVQSKENQIVSSLRQNDISSNPIKTSSRIWPCSPHLNVTSNFFSDPKIKGVKLQSSTISSYAYVSSRPIDGPTCV EDDGKKSENPLDCWLFGVNLSNNSSNGIACLEKELGCSCPTTVPSGPNESNPAGACETERVQSPDFSLSNKGQSQIISEA SPIEWQKKQASVTVPAMRTRTKVQMQGVAVGRAIDLATLSGYDNLIDEVEKLFDIKGELRLQNKWAVTFTDDENDMMLVG DDPWPEFCSMVRRIYICTREELKKMKCKLPATSSEVVEETLLSPDSQIRDEAQQSHMP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 20 | 668 | 649 | 1.1E-281 | – | |
| PANTHER | 20 | 668 | 649 | 1.1E-281 | – | |
| SUPERFAMILY | 121 | 259 | 139 | 2.88E-41 | ||
| Gene3D | 127 | 231 | 105 | 6.2E-43 | ||
| CDD | 128 | 230 | 103 | 1.83653E-18 | ||
| ProSiteProfiles | 130 | 232 | 103 | 11.491 | ||
| SMART | 130 | 232 | 103 | 2.0E-19 | ||
| Pfam | 130 | 230 | 101 | 2.8E-21 | ||
| Pfam | 256 | 335 | 80 | 1.6E-31 | ||
| Gene3D | 291 | 362 | 72 | 2.1E-31 | – | |
| Gene3D | 574 | 666 | 93 | 2.1E-33 | – | |
| Pfam | 575 | 614 | 40 | 4.2E-5 | ||
| ProSiteProfiles | 578 | 659 | 82 | 26.047 | ||
| SUPERFAMILY | 579 | 655 | 77 | 1.96E-12 | – | |
| Pfam | 624 | 662 | 39 | 1.1E-5 | ||
| MobiDBLite | 678 | 698 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0397000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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