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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0398500 |
| Transcript ID | LotjaGi3g1v0398500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G61850.4 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7; TrEMBL-Plants: tr|I3SV35|I3SV35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0398500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80045511..80048908) extracted from Lotus japonicus Gifu genome v1.2.
GTGATAGTAACAATATAGAGATATATATAAAAAGAAAAATGAAATACAAATGAATTGTAAGATAATATGAAAATTGAAGT GTAAATCATAACTCTTTAACAAAACAAATAGTGCTTGTGTAGTCAAAACGCTTCTCACTTCCCCTTTTCCTTTGCAGCGT TCATAAAGTAGGCCAACACATAAAGCCAGTCCACAAACGAACCAAAACATTCTTTCTTGCACAAAGCACTAACAGCAGCT GCAGACAAGCAAGGTCATCTCTCTCTCTCTCTCAAAATTGTCACCCGTTGCTTTTCTCTTTCTTTTCTTTGAATTCATGC AGTGACCAAAGGTGGCTATGGATTTTTATCAAGTCTTTCTTTGATTCATAGTCCTGAGTTATTTATTCTGGTTTTAGGGT AGGTTAAAAGCTGACACAAATATCAACTTTTACAACATCAAAGAGTTGCTTTTATCTTTGATTTGATTTTTCAGCTACGT ATATCTTGGAGATGATGCACATGGTAATATAAGCAAGGCCATCATCTAGTTACATATGTTACCATCACCTTCTCTCTTTT TCTACCAAAGAAAGCTTTTGATCAAGTCCTGAATACAAAGCACTGCTTTTTCTTTTCATTTCTCCTTTCCCTTGTTCTTT AAAGAAGATACTACTTGTTTATTATTGATTTCTTCAAGTTAGATATTTTGTTAATTTGAGTAGAAAGCCTTTCTACCTTG TTTTGATATTTTCTTGTCAATTATCTACAAAATTTTGTTGGTAAACTTGAAATCAACAATTCTTGAAATCTTGTGTACTT TATGGATTCATGTCACACATGAACACTCTAATTTCTTTGCTCTCGAAAAATAAAAATTAAGGTGCTCTTCTTTTGGGGTT TCTCAGGACCTGTGAGAGTGATGGAGGGGATAGATCCCAATTCATGTGTAAATAGGACAGTTATGGAGAAGAAAACAAGG CCACAAGAGCAAATTAACTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACA ACCTAGATACTTCTGCAAGACATGTAGAAGGTACTGGACAGAAGGTGGGTCTCTCAGAAATGTCCCAGTAGGAGGTGGTT CCAGAAAGAACAAGAAGGTTCTCACCTCATCTGCGGCGGCAGCGGCAGCAGCAGCAGCTTCATCAAAGGCTATTCCAGAC CTAAACCCACAACCAACAACCCTCTCATCATCAGTTTCTAATTCCCAAAACCCTAAAATGCATGGAGGCCAAGATCTTAA CCTTGCTTTCCCACCTATGGAAAACTATCATCATCATCATGGTATGGTTCCATATGTTGAGATGCACAATGGTGGTGATC ACTCTTCTTCTTCTGCTCCAACTAATTCTCTTTCAGCTTTGGAGCTACTAAGGTATAGCATGGCATCAAGGGGCATGAAC CCTTATGCTCCTAATAACTCTTTAATGCCAAACACAAATTCCCTATACCCTTCTGGATTTCCCATGCAAGAAGTTAAGCC AAGCCTAGGCTTTTCAGTTGATGGGATTGGGAACAGGTCATATGAACATCAGGTCCAAGAGAGTGGTGGTGGTGGCAGGC TTTTGTTCCCTTTTGGAGATCATGTGAAGCAGCTTTCTGCTGAACAAGTGGAACAGAATAAAGAACAAGGGAATTCAACT GGATATTGGACTGGAATGATGGGTGAAGGCTCATGGTAAGAAGAGAAGAAAAAAGGAGAAGGAAAGTGAGAAAATGGATT CATCTTCTTTATATTTTTTTTTTCTTTTTTACATGGATCATTTATCTCAAGTTGTTCAGTACTAACAATAGGATACACAT TGTAAGGCCCAAGTTTTAAAGCTTTGGATAAGTGAATAAAATAAAAGAGTTATTTGATTAAGATAAATTTGGGAAGGAAA GAGGTTCAGGAAAAGTCCAAGAATGTATCGAAAAACCGAAAGAGTTATAGCACGACTAACATACGCTTAATCCTAGGTCG AAGGTATTAGTGAATAGTTAATTTACGCTTTAGGACACGATGGAAACTAATTCCAAAAATCCTCAGAGAAATGTTAGAAC TTCTCTTTTCCGTCCTTAAACAACCATTTCGATGCGAAATCCTGGAAAGTACGAACGTCAAATTCCAATTCTCGGAAGTT TGCCGAAACGGAATCCCTGATAGTTCGAAAAACCTAAGATCGACAGACGATGAAGACTTTTTCTATCCGGAAACTCAAAT GAAGATTCCACCCGCGTTCACCTACTTCTCTCATCATTCCTAATCTTTCTTCAGAAGGAAGTTTTCTCGTCCGACGATCA CTGCAAAAAGTAGTTTTTCGGGATAAACCGACTTACACCGACTTATGCCGATTTTGGATCTTTTGGTTTAATTCCAAGAA TTCTATTTTGAGTTCTGGAATTCTGTCGCCAGAACCTATCTTAGAATGCGCAGAGGAACGCACAGGAAAAATCGGAATCG CAAAAAAATCATTTTTCCGTTTTTTTCCAAAACCTATAAATAGCTTGAAAAATTAGATTTTTTCACAAAAACCCATTTTC CCCACCCCCCAAAACCGCGAGTTCCTAGAGAGAGAGAGAGATCCGGATCTTCGTCGTTTCTTGCCCGTTTGCTTCACCGT TCGTCACTAATCGAAGACCCCGAGGTAGGTAATCTATACTCTCCTTCGAATCGTCGTTTCTGTCCATTTCTCCTGCGACT TTCTGAGTTCAAAATTTTGAGGTTTTTGAAAAACTGTTCAAATCAGTTGATTTCAGCGTCTAAACTTCTTCCCTGCATGC TCCTGAGCGTGTTCTGCGGATTAGATTTTGTCAAATGTCGACGAAATGCCGCCGGGATCAATTTCTACCCTAAATACCCA TTTTTCGGCAAAGTCGCAACCTTTACGCTCTAATCTATCGACTTGGCTTAGTGCTAGTAGGATTTGTCGTCATAAACGTC GTTGTGGACGTCCCCATCCAATTTGTTTTTCAAAAATCCAATTTTGAAATTCTGAGCTAAAAATAATGACCAAACTGCCC CTATATCAGTTTTCGATCCGAAAATTTTTCCGAGCCTAGAACCGTCTTAGTTACGGCTTATGTTAACCTAGGAACCAAGT TTGATCGAAGAAAAATCGACCCTCCCAATTAAGGAAAGTGGCCGAGAGCTATATCAAGGGGGGAGGAGAATCCGATTTTT CGAAAACTTGTCTTAACGCGTTAGATTGTCGTACCACGAAGGTAGTAGTGTACTGTGTAACCCTAGGACTCTTTGATTGT TGAGTTTCTGACTCTTGGTGTTGATTTCTGTGATTTTTGCTTAAGGTTCGTTTGAGGGGATTCCCAGGAATCAAGGAGAA GAGCTTGAAGAACATTTTGAGGAGGAAGCTGGAAGACC
CDS sequence (LotjaGi3g1v0398500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGGATAGATCCCAATTCATGTGTAAATAGGACAGTTATGGAGAAGAAAACAAGGCCACAAGAGCAAATTAACTG TCCAAGGTGCAATTCAACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAACCTAGATACTTCTGCAAGA CATGTAGAAGGTACTGGACAGAAGGTGGGTCTCTCAGAAATGTCCCAGTAGGAGGTGGTTCCAGAAAGAACAAGAAGGTT CTCACCTCATCTGCGGCGGCAGCGGCAGCAGCAGCAGCTTCATCAAAGGCTATTCCAGACCTAAACCCACAACCAACAAC CCTCTCATCATCAGTTTCTAATTCCCAAAACCCTAAAATGCATGGAGGCCAAGATCTTAACCTTGCTTTCCCACCTATGG AAAACTATCATCATCATCATGGTATGGTTCCATATGTTGAGATGCACAATGGTGGTGATCACTCTTCTTCTTCTGCTCCA ACTAATTCTCTTTCAGCTTTGGAGCTACTAAGGTATAGCATGGCATCAAGGGGCATGAACCCTTATGCTCCTAATAACTC TTTAATGCCAAACACAAATTCCCTATACCCTTCTGGATTTCCCATGCAAGAAGTTAAGCCAAGCCTAGGCTTTTCAGTTG ATGGGATTGGGAACAGGTCATATGAACATCAGGTCCAAGAGAGTGGTGGTGGTGGCAGGCTTTTGTTCCCTTTTGGAGAT CATGTGAAGCAGCTTTCTGCTGAACAAGTGGAACAGAATAAAGAACAAGGGAATTCAACTGGATATTGGACTGGAATGAT GGGTGAAGGCTCATGGTTCGTTTGA
Protein sequence (LotjaGi3g1v0398500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGIDPNSCVNRTVMEKKTRPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKV LTSSAAAAAAAAASSKAIPDLNPQPTTLSSSVSNSQNPKMHGGQDLNLAFPPMENYHHHHGMVPYVEMHNGGDHSSSSAP TNSLSALELLRYSMASRGMNPYAPNNSLMPNTNSLYPSGFPMQEVKPSLGFSVDGIGNRSYEHQVQESGGGGRLLFPFGD HVKQLSAEQVEQNKEQGNSTGYWTGMMGEGSWFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 272 | 266 | 6.3E-92 | – | |
| PANTHER | 7 | 272 | 266 | 6.3E-92 | – | |
| Pfam | 23 | 79 | 57 | 2.8E-33 | ||
| ProSiteProfiles | 25 | 79 | 55 | 28.966 | ||
| ProSitePatterns | 27 | 63 | 37 | - | ||
| MobiDBLite | 95 | 123 | 29 | - | – | |
| MobiDBLite | 99 | 122 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0398500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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