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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0401400 |
| Transcript ID | LotjaGi3g1v0401400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix loop helix (BHLH) family transcription factor; TAIR: AT4G17880.1 Basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|O49687|MYC4_ARATH Transcription factor MYC4; TrEMBL-Plants: tr|A0A0L9VR06|A0A0L9VR06_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0401400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80392961..80395734) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATGCACCCCACACCGAGCACATGCTTGCCCTCAAGCGGGTTCTCCGCTATGTTTGTGGCACATTGACTTATGGGCT ACATTTGTATCCCTCCCCGGTTGAAAAGCTTGTTTCTTACACTGATGCTGACTGGGGGGGCTGTCCTGACACCAGACGCT CCACTTCTGGTTACTGTGTTTTCCTCGGTGACAACCTCATATCTTAGTCCTCCAAGCGGCAACCCACTCTCTCTCGCTCT AGTGCTGAAGCTGAATATCGCGGTGTTGCTAATGTTGTCTCCGAGTCCTGCTGGATCCGCAATTTACTTCTGGAGCTTCA TTTTCCTCTCTCTCAGGCAACATTGGTCCACTGTGACAATGTTAGTGCCATCTACCTCTCTGGGAATCCAGTGCACCATC AGCGTACCAAACATATTGAGATGGATATCCACTTTGTTCGGGAAAAGGTCGCGCGTGGCCAGGCTCGCGTCCTTCATGTT CCTTCCCGTCATCAGATTGCGGACATTTTTACCAAGGGCCTACCTCGGCTTCTTTTTGATGATTTTCGTTCCAGTCTCAG CGTCGGTGAACCTCCCGCTTCGACTGCGGGGGTGTGATAGAATAGGATATTATTTATTCTCTTTGTAAATTAGGGTTTAA TATTTATTGTTAGTCAACTAGGTAAGTTGTATATATAGGGTATTTCATTATCAATAATAGTCACGGAATTGATTTCCTTC AAAATATATATATATATATCCTTAATATGTAGTGTCGGGTCCACACCAATTGAGCTCTCTCCAAAGTCCAAAAGATCCAT TTTTTCCATAGTGCTTTATTTTTTGACCTTTCTCCAACCAACACTAGCTAATTGTCACGTGCTATATTAAAAGCACTGTT CGTCCGTACAACGTTAGAACCACCTATGTTATTCTATTAATTAATGCCCAATCTTTCTCAGCCTCTTTATCCACTTCCAA TCCATACTTCCCAACTCTCCTCATCCCTACTTGTTCCCTTACTTCTTTGCCTACTCCATGGAAGATTTCATCATGTCTCC TTCCTCTTCCTCTTCTCTTGTCTCTCAACCCCAAGACAACACACCACCAACACCACCCCTCGAGCAAAAGCTTCAATTTC TACTCCAAAGCCAACCCGACTGGTGGGTCTACGCCATTTTCTGGCAAACCACAACCAACACAAATGGCAACCTCTCCTTA TCTTGGGGAGAAGGCCATTTCCAAGGCAGCAAAGAAACTTCCCCAACAAGTACTACCCAAAAGAAATTCAGCATAGATGA CAGTGACAAGAGCGCAAACGGTGGCGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCACGTTCTCTGTTGGCAGCG CCTCCTCCTCCTCCCTCCCCGGCAAGGCTTTCGCTTTAGGCTCAGTCCTCTGGCTCAACAGCAAGCATGAGCTTCAGTTC TACAACTGTGAGAGGTCACATGAGGCGCACGTGCACGGCATCCAAACCCTCATCTGCATCCCAACCACCAACGGCGTCAT CGAAATGGGTTCCTACGACAACATCAAACAAAATTGGAGCCTCGTCAACCACGTCAAATCCATGTTCGGAGTATCATCAT CACATTCGACACATTCGAATATGATGATGTCGAATGTGACAATGATACCCGAAGACAACAACATTAACAAAGTTCAGATC TTCAATGATGGCTGCAACCACAACAACATCTCCTTCGTGGACACCGGCATTTCTACCGGCGTCCGCGAAGGGAAACAAGA TGATAGCGCAGTTAAAGGTGATAGCGCAATTAAAGGATTCACACAAGAAGCCAGCAACAAAACCTTGGAACCCAAAGTTG CTTGTTATGCAGAATCATCAGATCAGTCTGACTCTGATTGTGCAATTTTGGCACCAGAGAAGAAAGAAACAAAGAAGAGA GGGAGGAAACCGTTGGCGGGGCGCGAAACGCCGATTAACCACGTGGAGGCAGAGAGGCAGAGGAGGGAGAAGCTGAACCA CCGGTTTTACGCGTTGAGAGCGGTGGTTCCGAATGTTTCAAGGATGGACAAGGCTTCTCTGCTCTCCGACGCGGTGGCTT ACATCAGCGAGCTGAAAGGGAAGATTGAAGAGCTAGAGAAGAAGGGGAGGAGTAATTTCAAGAAGGTGAAGATGGAAATG GCGGACACAATGGACAACCAGAGTAGTACTACAGTGATGACTACTTCCACTGTGGTGGACCAAATGGGGTCGACTCAGGG TTCTGCGGTTGATGTTGATGTGAGGTTAATAGGGCCTGATGCCATGGTGAGGGTACAATCGGAGAATGTGAACCACCCAG GTGCGAGGCTAATGGGTGCTTTAAGGGATTTGGAGTTTCAGGTCCACCATGCTAGCATGTCGAGTGTTAATGATCTTATG GTTCAAGATGTTGTTGTTAAGGTTCCTAATGGGGTCATGAGAAATGAAGAGGGTCTTAAATCTGCGATTCTCATGAGATT GGGTCAGTAGTGACAGTGGCAACATTAATTAGCCAAAACTTCATAAGCTAGCTGTTTTTTGTTCATATACTAGTTGTTTA CCTAAGTCCTAAGCTACGTCCTATGATAATTAATTGCTTACATTAGTTTTTTATATTATCTTTGTTTTTAGTTCTTTATT TTCGCAGTGCTTGATGACAGCACAAGTGGTTCCAACCTGCAATCATGTAATTACATTATTGGTCTGAGGAATCTAAATCA GCTTTTGTACTGAGGAATTTAAGAATATCTACATATATCATACTTAAAATATTT
CDS sequence (LotjaGi3g1v0401400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATTTCATCATGTCTCCTTCCTCTTCCTCTTCTCTTGTCTCTCAACCCCAAGACAACACACCACCAACACCACC CCTCGAGCAAAAGCTTCAATTTCTACTCCAAAGCCAACCCGACTGGTGGGTCTACGCCATTTTCTGGCAAACCACAACCA ACACAAATGGCAACCTCTCCTTATCTTGGGGAGAAGGCCATTTCCAAGGCAGCAAAGAAACTTCCCCAACAAGTACTACC CAAAAGAAATTCAGCATAGATGACAGTGACAAGAGCGCAAACGGTGGCGACGCCGAGTGGTTCTACGTCATGTCGTTGAC TCGCACGTTCTCTGTTGGCAGCGCCTCCTCCTCCTCCCTCCCCGGCAAGGCTTTCGCTTTAGGCTCAGTCCTCTGGCTCA ACAGCAAGCATGAGCTTCAGTTCTACAACTGTGAGAGGTCACATGAGGCGCACGTGCACGGCATCCAAACCCTCATCTGC ATCCCAACCACCAACGGCGTCATCGAAATGGGTTCCTACGACAACATCAAACAAAATTGGAGCCTCGTCAACCACGTCAA ATCCATGTTCGGAGTATCATCATCACATTCGACACATTCGAATATGATGATGTCGAATGTGACAATGATACCCGAAGACA ACAACATTAACAAAGTTCAGATCTTCAATGATGGCTGCAACCACAACAACATCTCCTTCGTGGACACCGGCATTTCTACC GGCGTCCGCGAAGGGAAACAAGATGATAGCGCAGTTAAAGGTGATAGCGCAATTAAAGGATTCACACAAGAAGCCAGCAA CAAAACCTTGGAACCCAAAGTTGCTTGTTATGCAGAATCATCAGATCAGTCTGACTCTGATTGTGCAATTTTGGCACCAG AGAAGAAAGAAACAAAGAAGAGAGGGAGGAAACCGTTGGCGGGGCGCGAAACGCCGATTAACCACGTGGAGGCAGAGAGG CAGAGGAGGGAGAAGCTGAACCACCGGTTTTACGCGTTGAGAGCGGTGGTTCCGAATGTTTCAAGGATGGACAAGGCTTC TCTGCTCTCCGACGCGGTGGCTTACATCAGCGAGCTGAAAGGGAAGATTGAAGAGCTAGAGAAGAAGGGGAGGAGTAATT TCAAGAAGGTGAAGATGGAAATGGCGGACACAATGGACAACCAGAGTAGTACTACAGTGATGACTACTTCCACTGTGGTG GACCAAATGGGGTCGACTCAGGGTTCTGCGGTTGATGTTGATGTGAGGTTAATAGGGCCTGATGCCATGGTGAGGGTACA ATCGGAGAATGTGAACCACCCAGGTGCGAGGCTAATGGGTGCTTTAAGGGATTTGGAGTTTCAGGTCCACCATGCTAGCA TGTCGAGTGTTAATGATCTTATGGTTCAAGATGTTGTTGTTAAGGTTCCTAATGGGGTCATGAGAAATGAAGAGGGTCTT AAATCTGCGATTCTCATGAGATTGGGTCAGTAG
Protein sequence (LotjaGi3g1v0401400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDFIMSPSSSSSLVSQPQDNTPPTPPLEQKLQFLLQSQPDWWVYAIFWQTTTNTNGNLSLSWGEGHFQGSKETSPTSTT QKKFSIDDSDKSANGGDAEWFYVMSLTRTFSVGSASSSSLPGKAFALGSVLWLNSKHELQFYNCERSHEAHVHGIQTLIC IPTTNGVIEMGSYDNIKQNWSLVNHVKSMFGVSSSHSTHSNMMMSNVTMIPEDNNINKVQIFNDGCNHNNISFVDTGIST GVREGKQDDSAVKGDSAIKGFTQEASNKTLEPKVACYAESSDQSDSDCAILAPEKKETKKRGRKPLAGRETPINHVEAER QRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYISELKGKIEELEKKGRSNFKKVKMEMADTMDNQSSTTVMTTSTVV DQMGSTQGSAVDVDVRLIGPDAMVRVQSENVNHPGARLMGALRDLEFQVHHASMSSVNDLMVQDVVVKVPNGVMRNEEGL KSAILMRLGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 490 | 490 | 8.3E-150 | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 490 | 490 | 8.3E-150 | – | |
| Pfam | 28 | 190 | 163 | 7.3E-47 | ||
| MobiDBLite | 67 | 91 | 25 | - | – | |
| MobiDBLite | 67 | 83 | 17 | - | – | |
| Gene3D | 310 | 388 | 79 | 7.5E-15 | ||
| ProSiteProfiles | 310 | 359 | 50 | 16.514 | ||
| SUPERFAMILY | 311 | 371 | 61 | 1.57E-16 | ||
| CDD | 314 | 364 | 51 | 2.04639E-14 | ||
| Pfam | 314 | 360 | 47 | 1.6E-10 | ||
| SMART | 316 | 365 | 50 | 1.1E-15 | ||
| Coils | 349 | 369 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0401400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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