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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0402200 |
| Transcript ID | LotjaGi3g1v0402200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein iq-domain 1; TAIR: AT1G01110.2 IQ-domain 18; Swiss-Prot: sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1; TrEMBL-Plants: tr|V7ARS0|V7ARS0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0402200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80469254..80473457) extracted from Lotus japonicus Gifu genome v1.2.
AACTTGCTTTATATCCTCAGCTGGTTCACCCCCTCACTCTCACATTCCTATATTCAATTATTATTCATTAACATTAAAAG CTGCTTAAGGTAGCTTCTGACACTCCACTCATGTCCACCCCACCCATGCCACAAAAATCCATAACCTTTACCCATTTAGA TTAATCTCCCTACAAATTATTATTCTATTCTACTCACAGGCTGTCTCTGACTGCCACATTTTAATACTATATCAATTTTC GTGTACTTCAAACCATGTCCTCCTCTCCTCAACCAACACCATCTCGAACCTTGTTGTTAAATGACTACTTTATGCCATGT TGGTCAAAATAATCTCATGATCATCATTCTTTATCCACACCCTAATTGATCTTAATCAAGAGTATCTAGTATTAATTTAT GTAGAGTATCTTATAGTGAAAATTTCAAAAGGCTTTGACACATGGGGTGGCCCAGATATATCAGTGGCAGATGAAGAAAG ATTCATTTATTTGCATCATTGAGGGCAGGGGTGCATTCACGACAGAGCCATAGCAGAACAACGTGTAGTACTAGATAAAA ATAACAAACATTGAATTGGAGATCCACAAGTGTATGCTTTGGTTCTCCTTGTTATTCTTCTTTCTCTCAATTTTCTTTTT CCCCCAAACACGGTTAAACAACTTGGTTGGGTGCATTTCCACCCAACCCACGTTGTCTTCTTCTTCTTCTCTGTCTTTGT ATATCAATTTTGCTGTAAATGCTTCTCTATGGGGAAGAAAGGAAGTAGTACCTCATGGTTAACTGCTGTCAAAAGAGCTT TCAGATCTCCCACCAAAGACACTGACAAAAAGAGTAGTAGAACAAGGGAAGATTATGATCATGAAGAAGATGAAGAGAAG GTAAACTCAATTATTTTCTATCCCTCCATTTTCCATCCTTTCACTTTCTCTTTCTCATCCCACATTTTTCTGTTTGCAGA AGAGAGAAAAACGAAGATGGATTTTCAGAAAACCTGCGAATCATGAAACAACAACAGTGAACAACACTCAACAACAACAA CAACAGCAGACACCAACGAAATTGAAGCATGATGTTGTGGCGGTTGCTGCTAGTGGAGGTTCAAGGACAGAGCAAGGTCA GAACCACGCGCTTGCGGTGGCGGTGGCAACTGCAGAGGCGGCTATGGCCACCGCTCAAGCTGCGGTGGAGGCGGCGAGGT TGACCAAGCCAAATACGAAGAATCATGCTCGGGAGCATCATGCTGCTGTTCTGATTCAAACTGCTTTCAGAGGCTATCTG GTGAGTCGGTGCATCCATTAGATCTGAGATTTCTAGCGTTGATTTTGTGATTTGTGTGAATTTGAATGGGAATTTGTATG ATTTTGAAGGCGAGAAGAGCGCTTCGTGCGTTGAAGGGGTTGGTGAAGTTGCAGGCTCTGGTGAGGGGGCATAACGTGAG GAAGCAGGCGAAGATGACGCTTCGGTGCATGCAGGCTTTGGTGAGGGTGCAAGCGAGGGTTCTTGATCAGCGTATAAGGT CTTCTGTTGATGGAAGTAGAAAATCCACCTTCAGTGACACTGGTAGTGTTTGGGAATCACGGTATCTTCAGGATATTTCT GATAGGAAATCACTTGTAAGTTGATTTTATTCAACTAGCTTCAATGATTTAACTTTGTGTACTTTTTCATTGCTTTCAGA ATCAGTAATCATGTTAGTAAGAAAAGTACTTTTTTGCTTACAAAAGTAAAGGAAACTGTTAATTATGACTTTGAATTTGG GGGTTTTGTTTAGATGTATATGAGTTGTTTGTGAAATGGTTTATGTGGTTGATTTGATTAGTCAAGAGAGGGAAGTAGCA TTGCAAGTGATTGGGATGAAAGACCACACACAGTTGAAGAAGTGAAGGCCATGTTGCAGCAGAGGAAGGAAGCAGCTATG AAGAGGGAGAGAACCTTGTCACAAGCTTTTTCCCAACAGGTTTCAGTTTCATTTTCATCCTCTAGAGTGTGTTTTGTTGA GTTTCTGAAATTGAGAATTTTCTAGGCTGATTGGTTGTGTGTGACATTTGTCTAGATTTGGAGGAATTGTAGGACATCAT CAATTGGAAATGAAGAGGAGATGGAAGAGAGACCGAAATGGCTTGACCGGTGGATGGCGCCGAAGCCGTGGGAGAATAGG GGAAGAGCTTCCACTGATCAAAGAGATCCCATTAAGACAGTGGAAATTGACACAGCTCAGCCTTATTCATATCTAGGAGC TAATTACAGAAGATCACATCCTAATTATCAGTATAACCCAAACAACCACCAACACCACCACCACAACCATCACCACCAAC AACAACAACCACAGAGACATTCCATTGCTTCCCCAATCCACAGAACCCACCAAAATGGATCCCTTCACCAATCCCCTGCA ACCCCTTCTCCAGCAAAATCAAGACCCATCCAAGTCAGGTCAGCGAGCCCCCGCTGCGTTAGAGAGGATAGAACCTACCC CACCTCTCAAACACCAAGCCTGAGGTCTAATTACCATTACACAGGGAACTTGTATCAAAATGCCAGGGTTGGAACAAGTA ATGGTGCTGCTAGTGCTACAATCCCTAATTACATGGCAGCAACTGAGTCTGCAAAGGCGCGAATTCGGTCGCAGAGCGCG CCTAGGCAGAGGCCTTCGACACCGGAGAGGGACAGGGCTGGATCAGCTGCAAAGAAAAGGCTTTCATTCCCTGCTCCAGA TCCTTATAATGTAGGAGTGGGTTATGGAAATTATGGGCATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGGCTGCATCAC ATATTGGGTTGGAGCATCAATCCAATTACTCCTCTTGCTGCACTGAGAGTCTTGGTGGTGAGGTTTCTCCTTCTTCAACT GGTGACCTTAGAAGGTGGTTGAGATGATTTGTTGCTTACTTTGATTTATGAGGAAGTGTCAGAACTATGACCCATTAGGA TATCAGTATCACCATTCACTGCTTATTTTAATTAGGCTTTTGTCATGTTAGAGTTAATTTAGCTAAGAAGGGGAATCTTG GCGCAAGAGTAAAAAGTTGTTGTCATGTGACTAAAGTCACAAGTTCAAGTCGTGAGAACAGTTTCTTGTGTGAAAAACAG GGTAAGACTGTCTATAATAGACCAAGTGGTTGGACTATTCCCCGGACCCTTAGAGTTATTTTAACTAACCCTTTCACCCC AAAAGAAAGGAAGTTACCCAGGGTGACCTGAACCTGATCTTAGGAGCAGAGAAGAAAGTACCTTCTTGCAAGTAACCATT CAAGTGTACGTTTATCATTCATTTTCCACACTTTTGTAAGGATGCCAAGATAAAAGTGAGCCGTATGTGGTGGCCTACCT CACTTGGGATGTTGTATTGATGTTGAAGGAATTGCCTAGACCCATTTGAATAGCCTTTAATGGACTGTGCTGTCACAATA ACTTGAAATATTTTGTATTTTAGTTATTGCCTTTACAGTTAGTAATGCACACCATCCCTGCCTCTTTCAATTAAATAGAT ATATTACAAGCTACTATCAAGAGAAGATCATATAATTATGGACATACTTCATTGTTCACAATTAGCAGCATTGAAGTTTT CTGGTCCTGTCATATTCTTAGACCCTTATAACCCAACATGAGTAATTGAGTTGATGTCCTCTCAATTCTCTTACGTACTG TTCACCCTCCAGATCTCGTGCACTGCTACAGTACCACATGTTAATAATGGTATGTGAGTGTCACTGCAATCTAACCCCTT TTTATCGTACATTATAAACATTTATTGTTAATCCATTATATGAAAGTGCGATTGAAATAGGATAATGTGCATAATTAGAG CAATTCTAAGGAATAAACTAAGAGGTCGTTTGGTACGTCATATTAGGCATGATAGTATAAGCTTATACAAGACATTATAG ACTTATCCATTGTTTGGTGCTCACATTGTATTGTATAAACTTATACATCAATCTCCTCTTATACATCAAAATGATGGATT ATTTAATCCACCATGTAGATGATGGATAAGGCATGATAAAAGTGCAATGTATAAACTACTTAATATATTTAATCAACCGC TACCACAATCACCCTCCACCACCACCACTGTCATTATCGCCACCTCCACCACCACCGTCGCCAACACCACCACCACCACC ACCGTCGCCGTTTCCGCCACCACAATCACTCTCCACCACCACCG
CDS sequence (LotjaGi3g1v0402200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGAAAGGAAGTAGTACCTCATGGTTAACTGCTGTCAAAAGAGCTTTCAGATCTCCCACCAAAGACACTGACAA AAAGAGTAGTAGAACAAGGGAAGATTATGATCATGAAGAAGATGAAGAGAAGAAGAGAGAAAAACGAAGATGGATTTTCA GAAAACCTGCGAATCATGAAACAACAACAGTGAACAACACTCAACAACAACAACAACAGCAGACACCAACGAAATTGAAG CATGATGTTGTGGCGGTTGCTGCTAGTGGAGGTTCAAGGACAGAGCAAGGTCAGAACCACGCGCTTGCGGTGGCGGTGGC AACTGCAGAGGCGGCTATGGCCACCGCTCAAGCTGCGGTGGAGGCGGCGAGGTTGACCAAGCCAAATACGAAGAATCATG CTCGGGAGCATCATGCTGCTGTTCTGATTCAAACTGCTTTCAGAGGCTATCTGGCGAGAAGAGCGCTTCGTGCGTTGAAG GGGTTGGTGAAGTTGCAGGCTCTGGTGAGGGGGCATAACGTGAGGAAGCAGGCGAAGATGACGCTTCGGTGCATGCAGGC TTTGGTGAGGGTGCAAGCGAGGGTTCTTGATCAGCGTATAAGGTCTTCTGTTGATGGAAGTAGAAAATCCACCTTCAGTG ACACTGGTAGTGTTTGGGAATCACGGTATCTTCAGGATATTTCTGATAGGAAATCACTTTCAAGAGAGGGAAGTAGCATT GCAAGTGATTGGGATGAAAGACCACACACAGTTGAAGAAGTGAAGGCCATGTTGCAGCAGAGGAAGGAAGCAGCTATGAA GAGGGAGAGAACCTTGTCACAAGCTTTTTCCCAACAGATTTGGAGGAATTGTAGGACATCATCAATTGGAAATGAAGAGG AGATGGAAGAGAGACCGAAATGGCTTGACCGGTGGATGGCGCCGAAGCCGTGGGAGAATAGGGGAAGAGCTTCCACTGAT CAAAGAGATCCCATTAAGACAGTGGAAATTGACACAGCTCAGCCTTATTCATATCTAGGAGCTAATTACAGAAGATCACA TCCTAATTATCAGTATAACCCAAACAACCACCAACACCACCACCACAACCATCACCACCAACAACAACAACCACAGAGAC ATTCCATTGCTTCCCCAATCCACAGAACCCACCAAAATGGATCCCTTCACCAATCCCCTGCAACCCCTTCTCCAGCAAAA TCAAGACCCATCCAAGTCAGGTCAGCGAGCCCCCGCTGCGTTAGAGAGGATAGAACCTACCCCACCTCTCAAACACCAAG CCTGAGGTCTAATTACCATTACACAGGGAACTTGTATCAAAATGCCAGGGTTGGAACAAGTAATGGTGCTGCTAGTGCTA CAATCCCTAATTACATGGCAGCAACTGAGTCTGCAAAGGCGCGAATTCGGTCGCAGAGCGCGCCTAGGCAGAGGCCTTCG ACACCGGAGAGGGACAGGGCTGGATCAGCTGCAAAGAAAAGGCTTTCATTCCCTGCTCCAGATCCTTATAATGTAGGAGT GGGTTATGGAAATTATGGGCATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGGCTGCATCACATATTGGGTTGGAGCATC AATCCAATTACTCCTCTTGCTGCACTGAGAGTCTTGGTGGTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGAAGGTGG TTGAGATGA
Protein sequence (LotjaGi3g1v0402200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKGSSTSWLTAVKRAFRSPTKDTDKKSSRTREDYDHEEDEEKKREKRRWIFRKPANHETTTVNNTQQQQQQQTPTKLK HDVVAVAASGGSRTEQGQNHALAVAVATAEAAMATAQAAVEAARLTKPNTKNHAREHHAAVLIQTAFRGYLARRALRALK GLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSVDGSRKSTFSDTGSVWESRYLQDISDRKSLSREGSSI ASDWDERPHTVEEVKAMLQQRKEAAMKRERTLSQAFSQQIWRNCRTSSIGNEEEMEERPKWLDRWMAPKPWENRGRASTD QRDPIKTVEIDTAQPYSYLGANYRRSHPNYQYNPNNHQHHHHNHHHQQQQPQRHSIASPIHRTHQNGSLHQSPATPSPAK SRPIQVRSASPRCVREDRTYPTSQTPSLRSNYHYTGNLYQNARVGTSNGAASATIPNYMAATESAKARIRSQSAPRQRPS TPERDRAGSAAKKRLSFPAPDPYNVGVGYGNYGHSLRSPSFKSVAASHIGLEHQSNYSSCCTESLGGEVSPSSTGDLRRW LR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 79 | 79 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 5 | 557 | 553 | 2.4E-183 | – | |
| PANTHER | 5 | 557 | 553 | 2.4E-183 | – | |
| MobiDBLite | 19 | 56 | 38 | - | – | |
| MobiDBLite | 58 | 79 | 22 | - | – | |
| SUPERFAMILY | 131 | 181 | 51 | 4.25E-5 | ||
| Gene3D | 134 | 189 | 56 | 3.6E-7 | – | |
| SMART | 135 | 157 | 23 | 5.6E-6 | ||
| ProSiteProfiles | 136 | 164 | 29 | 10.255 | ||
| Pfam | 137 | 157 | 21 | 1.7E-5 | ||
| SMART | 158 | 179 | 22 | 110.0 | ||
| ProSiteProfiles | 160 | 187 | 28 | 8.846 | ||
| Pfam | 163 | 179 | 17 | 0.05 | ||
| MobiDBLite | 310 | 327 | 18 | - | – | |
| MobiDBLite | 310 | 331 | 22 | - | – | |
| MobiDBLite | 343 | 432 | 90 | - | – | |
| MobiDBLite | 370 | 404 | 35 | - | – | |
| Pfam | 410 | 512 | 103 | 2.2E-24 | ||
| MobiDBLite | 417 | 432 | 16 | - | – | |
| MobiDBLite | 463 | 497 | 35 | - | – | |
| MobiDBLite | 542 | 562 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0402200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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