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LotjaGi3g1v0409200.1

Overview

Field Value
Gene ID LotjaGi3g1v0409200
Transcript ID LotjaGi3g1v0409200.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT3G14230.2 related to AP2 2; Swiss-Prot: sp|Q6K7E6|ERF1_ORYSJ Ethylene-responsive transcription factor 1; TrEMBL-Plants: tr|A0A0U1UPM5|A0A0U1UPM5_LOTCO AP2/ERF; Found in the gene: LotjaGi3g1v0409200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:81293002..81296890) extracted from Lotus japonicus Gifu genome v1.2.

TCCTCTTTATCAATTAAATCACATATCACGTCTTTACTTTCTCTCTCCTTTCTTCCTATTTCTTTCTTCTTCCACTTCTT CACACCTCAAAAGTGAGGTGTGAAGATATAATTATCCGGCTTCTAGTACCTAGTACCAGTAAACAAAAGGTTACCCCTCT AATTTCCTTCCCAAGTCAAAAAGCAAGGGCAAAACAGTAAAACCACCCCTCAACCATTTCCACTTATATACACCTCTCAC ATTCTTACCTCACAGTCACCAACCTCAAAAATCATTCAAAACCCTGTTAAAAAAAAAGCCATAGAAACCAAACCTGTTCC TTTTTCTTCGATTAGGTACAAGAATAATCCATCATCATCATCATTCATCATTCATCATCAACCTTAACTTCCCCAAACCA CAACGATCTGACAAGTTTTTGACACCATGTGTGGAGGAGCAATCATCTCCGACTTCATCCCGGCGGCGGCGGCGGGTTCC CGCCGTGTCACCGCCGACATCCTCTGGCCGAATTTGAAGAAACCCAATTCTAGGTCGATGTTGCTCGACGATGACTTCGA GGCTGGGTTTAGGGAGTTCAAGGATGACTCTGATTTCGAAGAGGAGGAGGAAGATGATGATGTTGCTCAGGATTTGCTTG CTGGTGCTAAGGGATTTGCGTTTTCTGCTACTGCTGCCGCTAAGACCAAGCGTTCCAATTCCTTCTCTAAGGGTAACTGT TTCTGATTATCCCCTTTTTTTATTGGTCGGAAATTTCGGTCTGGAATTTCACGTGCATTTAATCGTTTGCGTTTCATTGG GTGTTGTTGATTGATGGAAAAATCATTGAAAATCAATGATTTTGCCTTGTTTTTTTTTTAGTTTTTAATTTTTTTTAAAA ATAAAAACGGCTCTGTTTCCCTTTCCGATGATTGCTAATGATGTGTGATTTTCTGGGTCGTTAATTTTTTGTATGTGATT TCTGTTTATTGAGTTGGCATAGGAAATTTTATTCAGTTTTTTTTAGATCTTGGGTCTTGTTGATCTGTTGAAAATGGATT ATTGCTTTGCTTTGATTCATATATTATGTTTTATTGCTTTGGGTGGTTGTTTAGGGACTTCAGCAATTTACTTTGGAGTG GTTTAAGAACTGGGTTGGTTTTGTAGATCTATTTTGAGTCGGTTAGGGTTCTTGATGTCAACTTGTTGTTTTTTCCAGTG GAAGTTGAATTTTCCCCTTCTACTGAATGAGATTGATGGTTTTTCTTAAATTTTTTGGGTAGTGTTAATTAACTTTTAGG GCACTGTTCTCCTGTTTGATAAAAAATGAGGGAAACAATTCCCTTGGCTTTCACTGGGTGTTTTAGACATGGTTCATCAT CATTCACTACATGATTTGCAGCAGTAATTCATTTGGGTGTGTTTTTTGGGATTAATTTCGCGTTATTTGAAAATTGTGCT GTTTACTTCAATATTCCCTACTTGTGGGCAACAACAAGTAGGCATGTATGATGTATTAGACCTAGTGGGTGTTGTAAATT TGTGAGAGATGGGAAAAATCGTGTTCTATGGAGATAGTCTCTGTATTTTATTGATCTGAAACTTCATAATTTGAGGAATT TAATATAACTTCTACAATCTGTTCCATTAATTGGTCATTACTTGTTCCCGATTTGATGTTACATTGAATTTTGCTAGTTC GTTGGCTTCTGTTTTGGTTATTAACCTGGCATGTTGTGGGATAAATGATTTTGGCCAGCTTCAGATCGCTCATTAATTAA CAATCCATAAAATTGAAATTGAAATAGTTGATGTTAAATTTCCTCATGTTGTTATTACAAGCTGTGCTTGTTTTTCTTAT TAACATGTAACTATAACTGCCCTTTTGAATCTTTGATGTTTAATTTGATGGTAATTGTGTAAACTAAACGAAATAATACA TGATTTTTGTTAACCGATGTCCATACTAGTCGTTTTACATGCAATCCGTGCTGATTTTCCTTGCTGATCTTTTTGTATGT GTGTTTTTGGCATGTGATTTATTTTTATTGATGATACTGCATGTCTATTGTCCTTTGTGCACTAATTATATTTGTTTCCA ATTATATTGAAGGATCAACTGCTGCAAAATCTGTGGAATCAAATGAGCAAGCTGAGAAGTATGCTAGCAAAAAGAGGAAG AATCAGTATAGGGGGATCCGCCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCTAGAAAGGGGGTTCGTGT TTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATACGCGGCAATAAAG CCAAGGTGAATTTCCCTGTTGAGCCTCAATTGTCTTCAAAACGTCTCAAGGCAAATCCAGAGAAGCAGCTGTTGAAGGGA AATCCCAACTCTGTTCAGCCCAAAGCGAACAAGATGTTCGATTTCAATGACAATCTGGAGAGCTACTTCTCTTCTATGGA TCAGGTGGAACAGAAACCACTGGTTAACCAGTATGCTAACATGAGCCCCTTCCCCGGAAATGGAGCTCAGCTATCACCCT TCACTGCATCTGCTGATGTCAATGCTTATTTCAGCTCTGAGCACTCGAGCAATTCGTTTGATTACTCTGATCTTGGCTGG GGCGAACAGGGTCCCAAGACTCCTGAAATCTCATCCATGCTTTCTGCTCCTCTGGAAGGTGAATCCCAATTTGTGCAGAA TAACCTGCAGTCTGACTCTCAGGAGATGCTTCCAATGCAAGATGATTCTGCAAAGACACTAACTGAGGAGCTCGCAGATA TCGAATCCCAGCTGAGATTCTTTGAGAATCTTGATGGCACATGGGATGATGCTTCATTTGACTCCTTGCTGAGTGGAGAT GCAAGTCAGGATGGTGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTGCCTGCTGTCTCAGGCGGCGGTTTCTGAGT AACTTCTCCATGTTTATGTAAATAAAGCTACAAGTCAGTAACTTTCATTCTGCTTCTTTTTTCTTTAATCTTGTGTTTCT GTAACCCTCTCAGTGAAACCTCCATTTATAATTATTTAACCATTGTGTATTATTATTGCTTTCAGGAAGGGTGGTGCTGG TGTTGGTAGGAATGGTGGTACTAGTGCTGGTGATTGAGCTGAACAAGTAGCCTGCTTATTAAGTATGTGTGGAGTATTAT TTTCTTGTGGCTAATGGAAAACATAAACTGCGTAGTTTTCAGATGTTCTTTGTCTTGTTGAAGACTAAGCTTTTGGGGGA TTTTCTGTTTGATGTTCATAAGGATTGTTATGTTATGTTTGATCCGTGAGACTAACTTGGTTGCGGATATAATTTGAACT GCGGTGTTTTTTATTGCGACAATTTTACATGACTGAGACTATAAGTTTTCTCCCGTGTTTGGTTGGATGATTTCATATCT CGCAGGAGTGATTTTGCTTTCTGATTTGATTGTGTGATGAACTATCGCAGTATCACTTGAGTTTATCTTATCATGAAAAA CACACAAATGATTTTTATATTGTGAATGAATAATTTATATTTCAATGAAATTTAACTTTTATTAAAATACAATACAATCA TATAGTTGGTGTGTTTGAATCAAGGTTGAAAGCCCATTTACACATCCATTTCCGAAATTTTAAGAGTTACTCTAAAAACA TTGGATTTGTCATTTGAGGTTAAAAGTACTTTTTAGTTTTTACACAAACTAGTTTCCGGATTTTTTTTTTGAATGTAGTG AAAACTAGTTTTTGGAATGAAAAAAAAATACATTTTGGAGATTAATTTTTTATTGTACTTTTTTTTTCTATTTGGAAATA GAATTATGCCCATTTGAAAAAATCTTGATTTTTTAGTAGTGATGCTTCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0409200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTGGAGGAGCAATCATCTCCGACTTCATCCCGGCGGCGGCGGCGGGTTCCCGCCGTGTCACCGCCGACATCCTCTG GCCGAATTTGAAGAAACCCAATTCTAGGTCGATGTTGCTCGACGATGACTTCGAGGCTGGGTTTAGGGAGTTCAAGGATG ACTCTGATTTCGAAGAGGAGGAGGAAGATGATGATGTTGCTCAGGATTTGCTTGCTGGTGCTAAGGGATTTGCGTTTTCT GCTACTGCTGCCGCTAAGACCAAGCGTTCCAATTCCTTCTCTAAGGGATCAACTGCTGCAAAATCTGTGGAATCAAATGA GCAAGCTGAGAAGTATGCTAGCAAAAAGAGGAAGAATCAGTATAGGGGGATCCGCCAGCGTCCATGGGGAAAATGGGCAG CTGAGATCCGTGACCCTAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTAT GATGCTGAAGCTAGGAGGATACGCGGCAATAAAGCCAAGGTGAATTTCCCTGTTGAGCCTCAATTGTCTTCAAAACGTCT CAAGGCAAATCCAGAGAAGCAGCTGTTGAAGGGAAATCCCAACTCTGTTCAGCCCAAAGCGAACAAGATGTTCGATTTCA ATGACAATCTGGAGAGCTACTTCTCTTCTATGGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGCTAACATGAGC CCCTTCCCCGGAAATGGAGCTCAGCTATCACCCTTCACTGCATCTGCTGATGTCAATGCTTATTTCAGCTCTGAGCACTC GAGCAATTCGTTTGATTACTCTGATCTTGGCTGGGGCGAACAGGGTCCCAAGACTCCTGAAATCTCATCCATGCTTTCTG CTCCTCTGGAAGGTGAATCCCAATTTGTGCAGAATAACCTGCAGTCTGACTCTCAGGAGATGCTTCCAATGCAAGATGAT TCTGCAAAGACACTAACTGAGGAGCTCGCAGATATCGAATCCCAGCTGAGATTCTTTGAGAATCTTGATGGCACATGGGA TGATGCTTCATTTGACTCCTTGCTGAGTGGAGATGCAAGTCAGGATGGTGGAAACCCAATGAACCTTTGGAGCTTTGATG ACCTGCCTGCTGTCTCAGGCGGCGGTTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0409200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCGGAIISDFIPAAAAGSRRVTADILWPNLKKPNSRSMLLDDDFEAGFREFKDDSDFEEEEEDDDVAQDLLAGAKGFAFS ATAAAKTKRSNSFSKGSTAAKSVESNEQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAY DAEARRIRGNKAKVNFPVEPQLSSKRLKANPEKQLLKGNPNSVQPKANKMFDFNDNLESYFSSMDQVEQKPLVNQYANMS PFPGNGAQLSPFTASADVNAYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDD SAKTLTEELADIESQLRFFENLDGTWDDASFDSLLSGDASQDGGNPMNLWSFDDLPAVSGGGF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190:SF185
7 375 369 1.8E-85 –
PANTHER
PTHR31190
7 375 369 1.8E-85 –
MobiDBLite
mobidb-lite
90 107 18 - –
MobiDBLite
mobidb-lite
90 120 31 - –
Gene3D
G3DSA:3.30.730.10
119 179 61 1.9E-30
IPR036955
SUPERFAMILY
SSF54171
120 178 59 2.35E-22
IPR016177
SMART
SM00380
120 183 64 6.7E-38
IPR001471
CDD
cd00018
120 178 59 4.26038E-32
IPR001471
Pfam
PF00847
120 169 50 6.7E-12
IPR001471
ProSiteProfiles
PS51032
120 177 58 23.96
IPR001471
PRINTS
PR00367
121 132 12 1.1E-11
IPR001471
PRINTS
PR00367
143 159 17 1.1E-11
IPR001471
Coils
Coil
322 342 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0409200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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