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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0409700 |
| Transcript ID | LotjaGi3g1v0409700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat-shock protein, putative; TAIR: AT1G54050.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|Q9SYG1|HS174_ARATH 17.4 kDa class III heat shock protein; TrEMBL-Plants: tr|A0A0R4J3N3|A0A0R4J3N3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0409700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81354670..81356674) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCACCATTTTTCTAAACCCCTGTTTAAGTATACCTTTCTCATCACAATTTCCCTTACTAACCCATTTTTAGACGGT GGCACAATAACAGGTAACAACATAATCATTGACACACCATGTTTTGTGAAGTACTATGGTTTTTACATACTGTTTTCTCT TGTTGATGATTTCAGGTTCTGAGTAATTGTTGTGTGAGACTGGTGAAAATGAACGGAACTGGTGACTTGTTCAATGCTGC AGTTAACAATCTGTTGAATTTTCCTGAAACCATGGAAAAGCTAATGTTTCCTTCTAGAGGACATGACAATCAAGAGAACA GAGGAGGAGTTTCTAGTATACCAGTGGATATTTTGGACACTCCCAAAGAGTATGTGTTCTTCATGGATGTTCCTGGTCTA TCCAAGTCTGAAATTCAGGTACTTATGAAGAAAGATCATATTCTTGTGTTTTGATTTCATTTTTGTTGTGTCTGGTACAT ATGAAATGTGCTTGTGTTTCAGGTTACTATTGAAGATGAAAATACTCTTGTGATAAGGAGCAATGGGAAGAGGAAACGTC AAGATAGTGAAGATGAAGGGTGCAAGTATCTTAGGCTGGAGAGGAGAGGGCCTCAGAATTTGCTGAGGAAGTTTCGTTTG CCTGAGAATGCAAATGTGTCAGCTATCACAGCAAAAAGTGAAAATGGGGTTCTCACTGTGGTTGTAGAGAAGCTGCCTCC ACCTCAAAAATCCAAAACAGTTGAAGTTGCAATAGCCTGAAGGATGATAGTTTGTATCGGGAGCTAGTTCCCCCTATTTT TTCTTGTTTTTAGTTTGTTTTAGCTACTTGCTTAGGAGTCTAGGGCTTCTAGGTTTGCCTTTTTGGTTTCTTCAGGTCAC AATGTAAAAGTGTTTAATCAGTGTTTCTTGTTTTTATGACCTTTTGTTCCTTCTAATGGAGTTTTGAAATGAATTTCTAG CTAGAAAGTACACAAAAACCAAGAACAAGACAATACCAAAACTATATTCCCATTCTCATTATCACCCACAATTAACATTT TGTAGAACTAATCCATAAGAATAAGAATCATTAAGTCTAAAAGGCATAAAAATAAGCACTACTACCCAAAATTGGTCCGT ATAAAAGAAAGCACTTGGTAAGAAATAAGAATGATGAGTACATGGTAACAACCATATGCAAAATTGGTACTAACAATACA AATTACATGGCGATTGGCTGAGTTGGGCATCTTGAAGCTGCTGACAGAACGGTTATAGCTCTGTAATGACAGAAAAATAA CCATGCATCTTGGGGGATAACCATGCATCTTGGGGAACGCAGCTAACTTGACCAGATTATTTTTTTGTTTTCTTGTTTCT GTTTCTGTTTCTTTTGGGTAGGTGCTTTCTCATTTTGGTCAACATTATCCATTAGATGCTCAAATTCCTCATAACTTGCA AATGGAGACGCAGCACTCTTGCCACCACTTTTACGTTTTCTTTTTCTTTTACTAACTTGATCCTCCTCTTCCTCATCAGA GGCATCATCAACATCCCCAATTTGAATATCATTGTCATCATCACTACCTTCAACTTCATCATCACTCCCTTCATCACCAC TTTGAAGAGCATCTATGTCTTCCTCTCCGATATCTGAGAGTATATCCTTATCCATCTCTGCATCACTAACATCACCAATC AAGTCCTCATCGTCCTCATTAGCTACTTGATCGAAATCATCATAATCATATTCACCGAATGGTTCCACAGATTGATCAGC AGAATCCAACAAATCATCAATCTCTTCATTGTCACTCTCGTCCCCACCTTCAACCTCGCCATCATCAACATCATACAGCT CCTCAGCGTCCTCCTCATCAGCTGACTTCTTTTTCTTTTTCTTTGATTTCGTAGATTTCATTTTGTTTGTATAAAATTTG TGGAATACAAGATCCTCTGGTGGCACATCTACTTCAGCAAGTGAAAGAATCTCTGGCCCGATCAAATGGTTGTTCATATC CATCT
CDS sequence (LotjaGi3g1v0409700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGGAACTGGTGACTTGTTCAATGCTGCAGTTAACAATCTGTTGAATTTTCCTGAAACCATGGAAAAGCTAATGTT TCCTTCTAGAGGACATGACAATCAAGAGAACAGAGGAGGAGTTTCTAGTATACCAGTGGATATTTTGGACACTCCCAAAG AGTATGTGTTCTTCATGGATGTTCCTGGTCTATCCAAGTCTGAAATTCAGGTTACTATTGAAGATGAAAATACTCTTGTG ATAAGGAGCAATGGGAAGAGGAAACGTCAAGATAGTGAAGATGAAGGGTGCAAGTATCTTAGGCTGGAGAGGAGAGGGCC TCAGAATTTGCTGAGGAAGTTTCGTTTGCCTGAGAATGCAAATGTGTCAGCTATCACAGCAAAAAGTGAAAATGGGGTTC TCACTGTGGTTGTAGAGAAGCTGCCTCCACCTCAAAAATCCAAAACAGTTGAAGTTGCAATAGCCTGA
Protein sequence (LotjaGi3g1v0409700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGTGDLFNAAVNNLLNFPETMEKLMFPSRGHDNQENRGGVSSIPVDILDTPKEYVFFMDVPGLSKSEIQVTIEDENTLV IRSNGKRKRQDSEDEGCKYLRLERRGPQNLLRKFRLPENANVSAITAKSENGVLTVVVEKLPPPQKSKTVEVAIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 154 | 148 | 6.6E-30 | ||
| PANTHER | 8 | 155 | 148 | 3.7E-62 | – | |
| PANTHER | 8 | 155 | 148 | 3.7E-62 | ||
| ProSiteProfiles | 37 | 155 | 119 | 23.57 | ||
| SUPERFAMILY | 38 | 147 | 110 | 1.05E-27 | ||
| CDD | 47 | 140 | 94 | 6.4041E-25 | – | |
| Pfam | 47 | 152 | 106 | 3.7E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0409700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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