Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0413000 |
| Transcript ID | LotjaGi3g1v0413000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation calcium exchanger; TAIR: AT1G54115.1 cation calcium exchanger 4; Swiss-Prot: sp|Q9SYG9|CCX4_ARATH Cation/calcium exchanger 4; TrEMBL-Plants: tr|A0A0B2S5Q2|A0A0B2S5Q2_GLYSO Cation/calcium exchanger 4; Found in the gene: LotjaGi3g1v0413000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81738211..81741558) extracted from Lotus japonicus Gifu genome v1.2.
CATTGACCGAGGGAGCTGATGTGTCAAACAACTTAAATTAGCAATGCAATGATAGTGTAAGTGTAAATTGCTTCAACTAA AACTATGTTTAACTCCATTTTTAATTTAATAATCATACTCCATAATGATAGAATACTTAAATTAATATGCACCAATACCA TTCGTGTATGTTAATTAATTATTTTTTTCCTTTTCTACATATAATAATATATATTTCTTTTCCTCTTCATTTGAAAAGAT TGATGATCTTCTACAATTCTACCATGAGAATGTAGACAAGTTCAACGCGTGAGAGTGTGCAGAATCCAAACCAACCACTC CTCGTGGTTCTCAACAGCGATAAACTCATCATCTCCGTGTAAATTCAACAACTGAAACCCCAGAATCAAACGAAGCTTGA AGGTATCTCACAGCAAAATCGAAAACCCCAAAATCGGTACCTATCTGAAACCCTACTTCTCATCTTGTTCAAATCATCGA GTAGGTACCAATATTTCTTAATCCTTACTGCAATTTACTTCGAATGCAATTTCCCCCATCAAATTCTGCTTCCAATTGTC TCAATTTCTAACTCTCGCTCTCAAGAATTCGAAACCCTAGCTGGGTTTTCAATTAATTGGGAGCTGAAACATCATCATGA AGCCGCTAAATGGGTTATTCGGTGCAAGACGTAGAAAGTTTCATAGAATTTTCAATGGCTTGTGTGCTATGGTTGTGTTT TTCTTCTTTTACAATAGGGATGACATCCTTCGCAATCCGCTTCTTAGGCATAATACATATTTTGGGTTTCAGAATTTGTC TCAAAATGCTTTTTTTAGAGATGGGGGTTATGTGATTCACCGCCGGTTGGCTCAGATTAGCTCAAACGCTTCGAGTGTAG CCGGTGAGCTGCGCAGTGACGAAGATTTAGCTGTAAGTAAGCCTGGATTCTGTACTGGATTGCTCCGCCATGATGGTTTT GATAGTTCATGTGAATTCTTAAAGGCTAATCCTCAGTGCTCTTCTGAGGGGTATCTTGATTACTTGGGGTTTTTCTATTG TAAATGTGGGAATTTTAGTGTGCTTGGTTATCTAGTGTTAGGGGTGTGGCTTGCTGCTTTGTTTTATCTCTTGGGGAATA CTGCAGCGGATTATTTCTGCCCTTCGCTCGAGCATCTCTCGAGGCTCTTGAAGTTGCCTCCGACTGTGGCAGGGGTTGTG CTGCTCCCGCTTGGGAATGGGGCGCCTGATGTGTTTTCCAGTATAGCTTCGTTTGTGGGTACGGAAGCGGGTGAGGTTGG GCTTAACAGCGTGTTAGGCGGTGCTTTGTTTGTTACTACTGTTGTTGTTGGAACTGTTTCTCTATGTGTTGCTGAGAGGG AGATTCAAATTGATCGAAGATGCTTTATCAGGGATGTGTGTTTCTTCCTGCTCACTCTTGCTTCACTGCTTCTGATTTTG GTTATCGGCAAGGTGGGCGTTGGGGGAGCCATTGCTTTTGTGTCGATTTATGTTTTTTATGCATCCATTGTAGCTGCCAA TGAGATATTACGGAAACATGCGCGGAGGTTGAAGTTGGATTCTGTCACACCACTGCTTCCTGTCCAGGGAAGTATGTTCT CTCTTGGTTCCGAAGAGGATACTTCTGTGTATAGCTCTTTGCTTGACTTAGACACTGAGAGTGATCCTCCTCGTCTCCCT CCTGCCTTGCCACAGTGGATGTGGTCCTCAAATGTGGCCATATATTCAAACCAGGCCAATAAAATCAATTCTTCAGATCA TGAAAGGCCTCCTTGGGGTTGGAGTGATGGGTCCACGGAAAATACCAGCTCATCGTTCTCTGTTTCGAAACTTTTTTTGC TGATGGAGATGCCACTGGAAATTCCTAGACGGCTAACAATTCCAATGGTCAATGAAGAAGTATGGTCGAAGCCGTATGCT GTGGCCAGTGCTTCATTGGCTCCCATTTTCCTAGCCTTTTTGTTTAGCACCCAAGATGATGTGAGTTCTAAGAGTATTAT ACTTGCTTATTTTTTTGGTGTTGCTGTTGGATGCACGCTTGGTATTCTCGCATATAAAAACACAGTGCCTGATCATCCAC CACCTCAGTTTTTACTTCCCTGGGTTCTTGGAGGATTCCTCATGAGCATAGTGTGGTTCTACATAATAGCAAATGAGCTT GTGGCTCTATTAGTAGCATTTGGTTTAATTTTCGGAATTAATCCATCCATCCTGGGATTAACTGTATTAGCATGGGGAAA CTCAATGGGAGATTTGATGTCAAATGTTGCACTGGCAATGAATGGAGAAGATGGAGTTCAGATTGCTTTATCTGGATGCT ATGCAGGTCCTATGTTCAACACGCTTGTTGGTTTGGGGATCTCGTTGCTGCTTGGGGCCTGGTCAAAGAAACCTTCATTG TACTCGGTGCCGAAAGATAGTAGCTTATTTTACACCCTGGGGTTTCTGATCACGGGATTGATGTGGGCACTTGTTGTTTT ACCACGCAACAATATGCACCCTAACAGAATGCTAGGAATGGGTCTCATCGCCCTTTATTTGATATTTCTTTCTTTCAGAG TGTGCACTGGTATGGGGCTGATAACAGTTGCTGGTTTAAGTTGACTTTTGACAATTAATCTACTTTGTAATCAAAAAATG AGAACATGCTATGGTTCCTACATGTCTTTGGGCCATGGGTTGTCATTCTGTTATAACCTGCTCTCCAATCTCCATATAGC AGGAATGCTCCTGCTGAAGATACCATTGTTGTACGTACAAACATTTTGTACCAATCCATTGGATTACCAAGACGCAGTCT CTTTACATTTGTATTTCTATATTATTTCTTCTCCGATATAGTAACTATTTATACTCTCAAATTAGTTATTGAAAGGATAT GAAACGTAATTTTATTTCACAATAGGTTGTTATATTATGGATTAAACACAAGTACAGTAAAATAAATCCTATTACTGTTC TGTGAAAATATGATACATGAATTATTCTCAGTTTCTCACTCACTAACTCCAACTCCGTTAACATTTAACTATTATTTCCC AAAGTCTCCCATCCCTGTTTCAGTCATACAGAATGGAGACTTCCTACTAAGAATCTCCTAATTAAGGTAATACCACAAAG AATAACATTTATACACTAAAAAAACACATAATTATCGATATTATTTTACCTACAGTTTAAAAACTATCGCAAAATATCAT CGTAACATTTTTTCTAAAGAAAAAAAGAAGTGTTACTGATGACCTGTGTCGCTGGTATTTTGGCGACAATTGTTATTTTT GATGTGATTAGTTAACGCTAACTTATTGACAAATTTGACTATCTGTATTGACTAATTACTAATGCGGC
CDS sequence (LotjaGi3g1v0413000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCCGCTAAATGGGTTATTCGGTGCAAGACGTAGAAAGTTTCATAGAATTTTCAATGGCTTGTGTGCTATGGTTGT GTTTTTCTTCTTTTACAATAGGGATGACATCCTTCGCAATCCGCTTCTTAGGCATAATACATATTTTGGGTTTCAGAATT TGTCTCAAAATGCTTTTTTTAGAGATGGGGGTTATGTGATTCACCGCCGGTTGGCTCAGATTAGCTCAAACGCTTCGAGT GTAGCCGGTGAGCTGCGCAGTGACGAAGATTTAGCTGTAAGTAAGCCTGGATTCTGTACTGGATTGCTCCGCCATGATGG TTTTGATAGTTCATGTGAATTCTTAAAGGCTAATCCTCAGTGCTCTTCTGAGGGGTATCTTGATTACTTGGGGTTTTTCT ATTGTAAATGTGGGAATTTTAGTGTGCTTGGTTATCTAGTGTTAGGGGTGTGGCTTGCTGCTTTGTTTTATCTCTTGGGG AATACTGCAGCGGATTATTTCTGCCCTTCGCTCGAGCATCTCTCGAGGCTCTTGAAGTTGCCTCCGACTGTGGCAGGGGT TGTGCTGCTCCCGCTTGGGAATGGGGCGCCTGATGTGTTTTCCAGTATAGCTTCGTTTGTGGGTACGGAAGCGGGTGAGG TTGGGCTTAACAGCGTGTTAGGCGGTGCTTTGTTTGTTACTACTGTTGTTGTTGGAACTGTTTCTCTATGTGTTGCTGAG AGGGAGATTCAAATTGATCGAAGATGCTTTATCAGGGATGTGTGTTTCTTCCTGCTCACTCTTGCTTCACTGCTTCTGAT TTTGGTTATCGGCAAGGTGGGCGTTGGGGGAGCCATTGCTTTTGTGTCGATTTATGTTTTTTATGCATCCATTGTAGCTG CCAATGAGATATTACGGAAACATGCGCGGAGGTTGAAGTTGGATTCTGTCACACCACTGCTTCCTGTCCAGGGAAGTATG TTCTCTCTTGGTTCCGAAGAGGATACTTCTGTGTATAGCTCTTTGCTTGACTTAGACACTGAGAGTGATCCTCCTCGTCT CCCTCCTGCCTTGCCACAGTGGATGTGGTCCTCAAATGTGGCCATATATTCAAACCAGGCCAATAAAATCAATTCTTCAG ATCATGAAAGGCCTCCTTGGGGTTGGAGTGATGGGTCCACGGAAAATACCAGCTCATCGTTCTCTGTTTCGAAACTTTTT TTGCTGATGGAGATGCCACTGGAAATTCCTAGACGGCTAACAATTCCAATGGTCAATGAAGAAGTATGGTCGAAGCCGTA TGCTGTGGCCAGTGCTTCATTGGCTCCCATTTTCCTAGCCTTTTTGTTTAGCACCCAAGATGATGTGAGTTCTAAGAGTA TTATACTTGCTTATTTTTTTGGTGTTGCTGTTGGATGCACGCTTGGTATTCTCGCATATAAAAACACAGTGCCTGATCAT CCACCACCTCAGTTTTTACTTCCCTGGGTTCTTGGAGGATTCCTCATGAGCATAGTGTGGTTCTACATAATAGCAAATGA GCTTGTGGCTCTATTAGTAGCATTTGGTTTAATTTTCGGAATTAATCCATCCATCCTGGGATTAACTGTATTAGCATGGG GAAACTCAATGGGAGATTTGATGTCAAATGTTGCACTGGCAATGAATGGAGAAGATGGAGTTCAGATTGCTTTATCTGGA TGCTATGCAGGTCCTATGTTCAACACGCTTGTTGGTTTGGGGATCTCGTTGCTGCTTGGGGCCTGGTCAAAGAAACCTTC ATTGTACTCGGTGCCGAAAGATAGTAGCTTATTTTACACCCTGGGGTTTCTGATCACGGGATTGATGTGGGCACTTGTTG TTTTACCACGCAACAATATGCACCCTAACAGAATGCTAGGAATGGGTCTCATCGCCCTTTATTTGATATTTCTTTCTTTC AGAGTGTGCACTGGTATGGGGCTGATAACAGTTGCTGGTTTAAGTTGA
Protein sequence (LotjaGi3g1v0413000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPLNGLFGARRRKFHRIFNGLCAMVVFFFFYNRDDILRNPLLRHNTYFGFQNLSQNAFFRDGGYVIHRRLAQISSNASS VAGELRSDEDLAVSKPGFCTGLLRHDGFDSSCEFLKANPQCSSEGYLDYLGFFYCKCGNFSVLGYLVLGVWLAALFYLLG NTAADYFCPSLEHLSRLLKLPPTVAGVVLLPLGNGAPDVFSSIASFVGTEAGEVGLNSVLGGALFVTTVVVGTVSLCVAE REIQIDRRCFIRDVCFFLLTLASLLLILVIGKVGVGGAIAFVSIYVFYASIVAANEILRKHARRLKLDSVTPLLPVQGSM FSLGSEEDTSVYSSLLDLDTESDPPRLPPALPQWMWSSNVAIYSNQANKINSSDHERPPWGWSDGSTENTSSSFSVSKLF LLMEMPLEIPRRLTIPMVNEEVWSKPYAVASASLAPIFLAFLFSTQDDVSSKSIILAYFFGVAVGCTLGILAYKNTVPDH PPPQFLLPWVLGGFLMSIVWFYIIANELVALLVAFGLIFGINPSILGLTVLAWGNSMGDLMSNVALAMNGEDGVQIALSG CYAGPMFNTLVGLGISLLLGAWSKKPSLYSVPKDSSLFYTLGFLITGLMWALVVLPRNNMHPNRMLGMGLIALYLIFLSF RVCTGMGLITVAGLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 15 | 32 | 18 | - | – | |
| TMHMM | 15 | 32 | 18 | - | – | |
| PANTHER | 20 | 653 | 634 | 0.0 | – | |
| PANTHER | 20 | 653 | 634 | 0.0 | – | |
| Phobius | 33 | 141 | 109 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 142 | 160 | 19 | - | – | |
| Pfam | 150 | 291 | 142 | 3.0E-26 | ||
| Phobius | 161 | 218 | 58 | - | – | |
| Gene3D | 180 | 304 | 125 | 2.6E-7 | – | |
| TMHMM | 214 | 236 | 23 | - | – | |
| Phobius | 219 | 238 | 20 | - | – | |
| Phobius | 239 | 249 | 11 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 250 | 271 | 22 | - | – | |
| Phobius | 272 | 276 | 5 | - | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| Phobius | 277 | 298 | 22 | - | – | |
| Phobius | 299 | 426 | 128 | - | – | |
| MobiDBLite | 370 | 389 | 20 | - | – | |
| TMHMM | 422 | 444 | 23 | - | – | |
| Phobius | 427 | 443 | 17 | - | – | |
| Gene3D | 438 | 645 | 208 | 7.1E-8 | – | |
| Phobius | 444 | 454 | 11 | - | – | |
| TMHMM | 454 | 473 | 20 | - | – | |
| Phobius | 455 | 473 | 19 | - | – | |
| Phobius | 474 | 484 | 11 | - | – | |
| TMHMM | 485 | 504 | 20 | - | – | |
| Phobius | 485 | 503 | 19 | - | – | |
| Pfam | 491 | 641 | 151 | 9.1E-26 | ||
| Phobius | 504 | 508 | 5 | - | – | |
| TMHMM | 509 | 531 | 23 | - | – | |
| Phobius | 509 | 533 | 25 | - | – | |
| Phobius | 534 | 553 | 20 | - | – | |
| Phobius | 554 | 577 | 24 | - | – | |
| TMHMM | 560 | 582 | 23 | - | – | |
| Phobius | 578 | 596 | 19 | - | – | |
| Phobius | 597 | 615 | 19 | - | – | |
| TMHMM | 597 | 616 | 20 | - | – | |
| Phobius | 616 | 626 | 11 | - | – | |
| Phobius | 627 | 654 | 28 | - | – | |
| TMHMM | 629 | 651 | 23 | - | – | |
| Phobius | 655 | 655 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0413000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…