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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0413100 |
| Transcript ID | LotjaGi3g1v0413100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heterotrimeric G protein gamma subunit; TAIR: AT5G20635.1 guanine nucleotide-binding protein subunit gamma; Swiss-Prot: sp|Q6AWT8|GG3_ARATH Guanine nucleotide-binding protein subunit gamma 3; TrEMBL-Plants: tr|A0A0B2P152|A0A0B2P152_GLYSO Cation/calcium exchanger 4; Found in the gene: LotjaGi3g1v0413100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81743036..81745051) extracted from Lotus japonicus Gifu genome v1.2.
CATTTTGAGACACAATCTATGACGGCCTTCTGCGCAAGTAATAGTGTTCCCACCCAAAACTGCTATCCTGCGCAGAACAA GGAAGACAGCCATTTTCATGCCTCGAAAGCACTTGTCACGTTACTTCTTTCAGCACCCTCGATACTGCAGAATGCAGAGA ATCTCTGTCAATTTCATCTTGAAATAACACTTTTACCCTTTAATAATTCATCACTTGACGACTTGTCTCGTTATTCATAG ATTTTCCAAGCCTGTTTTTGCATAAATCAATGTTCACTCTTTCCTTTTCAGTTTCCACTTCCCTGCGTGACAGTCACGTG TGCCCTGCCATTTGCATTTCTCGTTCGTACTTTGCTCTCTTTCTCTCTGTCTCTTTCTCTTCCCATGTAACTTTGCGTGC TGCCAGCAAGGTTTTCAACTTCAACCAATCCAAGCCCTTATACACAAGTACAAGCAAAACCCACGTTTCAAGTTTTTAAC TTGCAACTAGGTAACCAACCTTTCAAGTTATAAACTCTGCAGCTTCTTCATCTTCATATGTTCTTTCTGTGGTAGAAATT GAAAATGGATGGTGGTGGGTACAATTTCTATTCAGGGTTAAAAACTTCTATGGAGCAGCAACGAATGAGTCCCAAGTCAC CATTGCCAGGGTTTGTGGATTTTCATGGGAAGCGGAAGCAGATGGTTAAGATTCAGGTTTTGGAGAGAGAAATTGGTGTG CTTCAGGTTTGTTCAAGATTCTTTGCTTATGTAAATTGTCTCCAAAATGTAATAAACCAACTTTTCTCTTGTTTGAGTAA GAATGGGCTAGTTTTTTTTTTTATTTTTTAAATGCTTCATTTTGGGAACATGAGCTTGTTTGGATAAACGGTGAAGAATC ACATTGAATCCAAAATCGTGGACAATCATAAAAGTTAAGATAAATTGTTTTTGCCGATCATAATTTTTGTTCATAGTGGT TTCCATCGTGTATCCAAATATGTACCGTCACATATTTGTTGTGTTGGTTACTTTAACAAAGATTAGTTGAATGGTTGGTT GTGTTCATCAATAGCGTGAGTGATCTTTTGAGCTCCTCGTGTTAATAATAATTATTTCATGAGAAACCAATTTTCTCTGT TTCATATATATTATTGCTTCTAGGAGGAGTTAAAATCACTTGAAGGCCTTCACCCTGCTTCTAGATGCTGCAAAGAGTAA GTATCATGTGTATAGAATTATATTGAAAAATACACACATATTGTATTAAAGTAGTCAAGTATTGTATGTATATGCTAATT TGAAGGTGTGCATTTTCCTGAACAGGCTTGATGCATTTGTAGGCTCTATTTCAGATCCCTTCACACCAATGTATGAATCT CCAACTTAAATTTTACTTTCCTTTATATATTCATTAAATTATTCATTTATGTTACAAATCTCGAATAAATAATTCATAAT CATTATAACTGACACAGAAGAAAGGAGTCAGACACTGAATCTCATCACTTCAGGAAGCAGATCTGCAGGTACTACTTATC AGTTTTTGTCTTTTTTACCTTTTGCCCTTTTCATTTTCTCACTTGTTTCCATTTCTAAATTCATCATGTTTCCAATTCCT ATCAAATTCATCATGTATAAGTATAATACAATGAAGAGGATATTTTATTTTGCATTGTTATCAATAATAAGGACGTTAAT ACATTTGCTTTGTTATCAGTGTTCCATGGATTTGCTGCTCCAGCAGTTGCTTGCTGCAAAAGAAAATGGCAAAACTTTGT TGCTGTTCCTGCTGTTCATCATCAAACTCAAAATGTACAGGCAGCAATTGCTTGAAGACGGCCTCAAAATGTGCCCAAAA TTGTTGCTAACTAATGAAATTCTTCCACACACCTTGTGCTTGCTGCCTTGTGTGTTTTTCCTGCAAATGTGATGTGGGTC CATGCGTGTTTGATTTCTATTTTTTGGGGTCAATGTGTCGTTTTACATTGGAATTGCAGTTAGTTTGATTTCATTGGCGG AAGTTCACTACTGCAG
CDS sequence (LotjaGi3g1v0413100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTGGTGGGTACAATTTCTATTCAGGGTTAAAAACTTCTATGGAGCAGCAACGAATGAGTCCCAAGTCACCATT GCCAGGGTTTGTGGATTTTCATGGGAAGCGGAAGCAGATGGTTAAGATTCAGGTTTTGGAGAGAGAAATTGGTGTGCTTC AGGAGGAGTTAAAATCACTTGAAGGCCTTCACCCTGCTTCTAGATGCTGCAAAGAGCTTGATGCATTTGTAGGCTCTATT TCAGATCCCTTCACACCAATAAGAAAGGAGTCAGACACTGAATCTCATCACTTCAGGAAGCAGATCTGCAGTGTTCCATG GATTTGCTGCTCCAGCAGTTGCTTGCTGCAAAAGAAAATGGCAAAACTTTGTTGCTGTTCCTGCTGTTCATCATCAAACT CAAAATGTACAGGCAGCAATTGCTTGAAGACGGCCTCAAAATGTGCCCAAAATTGTTGCTAA
Protein sequence (LotjaGi3g1v0413100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGGGYNFYSGLKTSMEQQRMSPKSPLPGFVDFHGKRKQMVKIQVLEREIGVLQEELKSLEGLHPASRCCKELDAFVGSI SDPFTPIRKESDTESHHFRKQICSVPWICCSSSCLLQKKMAKLCCCSCCSSSNSKCTGSNCLKTASKCAQNCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 153 | 140 | 4.8E-63 | – | |
| PANTHER | 14 | 153 | 140 | 4.8E-63 | – | |
| Coils | 36 | 63 | 28 | - | – | |
| SMART | 39 | 108 | 70 | 0.0014 | – | |
| Pfam | 46 | 111 | 66 | 1.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | G protein-coupled receptor signaling pathway | A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576). |
Expression pattern of LotjaGi3g1v0413100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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