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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0414100 |
| Transcript ID | LotjaGi3g1v0414100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RELA/SPOT; TAIR: AT1G54130.1 RELA/SPOT homolog 3; Swiss-Prot: sp|Q9M5P5|RSH3L_ARATH Probable GTP diphosphokinase RSH3, chloroplastic; TrEMBL-Plants: tr|A0A151S6W9|A0A151S6W9_CAJCA Putative guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Found in the gene: LotjaGi3g1v0414100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81942313..81944539) extracted from Lotus japonicus Gifu genome v1.2.
CTGATCATTATGGCATTGTAGGTTTCTAAATTGAGTCACTTAAGCAAGCTGGCTCGTGAAAATAACACAGCTAGCAAGTC AGTTGAAGCAGATCGCCTGCATACAATGTTCCTTGCCATGGCAGATGCAAGAGCCGTCCTCATTAAATTGGCAGATCGAC TACATAATATGATGACACTAGATGCGTTGCCGGTGGCCAAACAACAAAGGTTTGCAAAGGAGACTTTGGAGATTTTCGCA CCTTTAGCCAACCGCTTAGGAATATCTAGTTGGAAGGAACAATTAGAAAATTTGTGTTTTAAGCATCTATATCCAATCCA ATATGAGGAGCTTTCATCAAAGCTTGTTGATTCCTATGATGATGTAATGATTGCTTCTGCAATAGAGAGATTGGAGCAAG CTCTTAAAGATGAAGGCATTTCTTACCATGTCATTTCTGGGCGACACAAAAGCTTGTACAGCGTCTATTGCAAAATGCTA AAGTATGTTACACTTTTCCCTCTTTTATTTAGCTTCTCCAATATTTTCACTCATGTTTATCTTTCATTTGGAAAATAAAA AAATGCAAACATGTTACTAGGAATTACCTTCATTGGTAAGGGAGGGAAGATTGTTTGAAGTATTGACCAAATTCAGTTTC AGATTAAAGAGTTTTTGTTGAAGTGTTAATGAGTAACTTCATATAAATTTCAGAGTTGTTGTTTTAGTTGTTTTAGATTA GAGTAAAGGTCAATTGCATGGCTTTTGTGGTGGTATTGTTTTGAAACAACTAATAAATAAATTAGTTTAAAGCGTGAGTC ATTTTTACCTGACATGACATGCTGGATGGTATTTTTTGTACATTACAAATCCTTAGTTCTTTCATTTGTTTATGTATTTG TAGGAAGAAACTATCTATAGATGATATCCATGATATTTATGGGCTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTATA AAGCCTTAACAGTTGTTCACAAGTTATGGTATGAGATACCTGGAAAGCTGAAAGATTACATATCTTGCCCCAAGTTCAAT GGGTATGTTGTAGCTCATAATCATATGTGAACTTGCAAGTGGCCATCTCAATATCATATCTGATTTTGACTTGTAATTCA CAGGTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTAGAGGTGCAAATTCGGACAAAAGACATGC ATTTACAAGCAGAATTCGGGTTCGCTGCTCATTGGAGATACAAGGAAGATGACTGTCAACATTCTTCGTTCGTGCTCCAG ATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAGGCAATGAGTAAAGATTGTTCGTCTGTGGGATATGCTGA TTCAATCAAGTCACCATGCAAATTCCCTTCTCATGCCGCTGATTGCCCATATTCTTATAAGCCTGATAATGGTGAGGAGG GACCTGTTTTCATTATCATGATTGAGAATGACAAGGTTTGTACAAGAAATTCGTTAATATTTAGTTTCTCATTTTCTATT TCTTCAGTCCATGGTTTGATAGTTATCATGTTGATAGTGTTGAAATTGGTGAGATAAAGTAAAAATTGTCATTTCATGCA AAATCACACTTTAGAAACATTGTGATCTTGTCATATTGAATCTTATGTATTAAGGCCCCGTTTATCTGATGACATAAGTG CTTATGCTAGTATTTGGGAGAGCTTTTGTAAATAGCTTATGACCTACCTATAAGTTGTTTTGAGTTTATTTCCATAGGCT GTTCATGAATATGAGCTTGTTCTTACCTATAACCTATTTTCAACTTATATCAATATGTTTCTCAACTTAGCTTATGACTA AATGCTTATGTGACAAGTGCCATGAGCGCTTAAATATGCTGTGTACACAAACACACCCTAATTATGTTTGTGCCTGAATG GATATATATGCAGATGTCGGTCCAAGAACTTCGTGCAAACTCGACAGTAATGGATTTGTTGGAGAGAGCGGGGCGGTCGA GCTCTCGGGTGATGACATACAGGTTCCCACTGAAGGAAGAATTGAGGCCAAGGCTGAACCACAAGCCTGTAAGTGATCCC TCTTGCAAGTTGAAGATGGGAGATGTGGTGGAGCTTACACCTGCCATACCTGACAAGTATCTCACAGAATATAGGGAAGA AATCCAACGCATGTATGATCGAGGCCTAACTGTATCAGGCACGGGCATGGTTGGTTCAAGAAGCTGA
CDS sequence (LotjaGi3g1v0414100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTTGCCATGGCAGATGCAAGAGCCGTCCTCATTAAATTGGCAGATCGACTACATAATATGATGACACTAGATGC GTTGCCGGTGGCCAAACAACAAAGGTTTGCAAAGGAGACTTTGGAGATTTTCGCACCTTTAGCCAACCGCTTAGGAATAT CTAGTTGGAAGGAACAATTAGAAAATTTGTGTTTTAAGCATCTATATCCAATCCAATATGAGGAGCTTTCATCAAAGCTT GTTGATTCCTATGATGATGTAATGATTGCTTCTGCAATAGAGAGATTGGAGCAAGCTCTTAAAGATGAAGGCATTTCTTA CCATGTCATTTCTGGGCGACACAAAAGCTTGTACAGCGTCTATTGCAAAATGCTAAAGAAGAAACTATCTATAGATGATA TCCATGATATTTATGGGCTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTATAAAGCCTTAACAGTTGTTCACAAGTTA TGGTATGAGATACCTGGAAAGCTGAAAGATTACATATCTTGCCCCAAGTTCAATGGGTATCAATCTCTGCACACTGTGGT GATGGGTGAAGGCAAGGTTCCCCTAGAGGTGCAAATTCGGACAAAAGACATGCATTTACAAGCAGAATTCGGGTTCGCTG CTCATTGGAGATACAAGGAAGATGACTGTCAACATTCTTCGTTCGTGCTCCAGATGGTTGAGTGGGCTCGATGGGTTGTC ACCTGGCAGTGCGAGGCAATGAGTAAAGATTGTTCGTCTGTGGGATATGCTGATTCAATCAAGTCACCATGCAAATTCCC TTCTCATGCCGCTGATTGCCCATATTCTTATAAGCCTGATAATGGTGAGGAGGGACCTGTTTTCATTATCATGATTGAGA ATGACAAGATGTCGGTCCAAGAACTTCGTGCAAACTCGACAGTAATGGATTTGTTGGAGAGAGCGGGGCGGTCGAGCTCT CGGGTGATGACATACAGGTTCCCACTGAAGGAAGAATTGAGGCCAAGGCTGAACCACAAGCCTGTAAGTGATCCCTCTTG CAAGTTGAAGATGGGAGATGTGGTGGAGCTTACACCTGCCATACCTGACAAGTATCTCACAGAATATAGGGAAGAAATCC AACGCATGTATGATCGAGGCCTAACTGTATCAGGCACGGGCATGGTTGGTTCAAGAAGCTGA
Protein sequence (LotjaGi3g1v0414100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLYPIQYEELSSKL VDSYDDVMIASAIERLEQALKDEGISYHVISGRHKSLYSVYCKMLKKKLSIDDIHDIYGLRLIVDKEEDCYKALTVVHKL WYEIPGKLKDYISCPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVV TWQCEAMSKDCSSVGYADSIKSPCKFPSHAADCPYSYKPDNGEEGPVFIIMIENDKMSVQELRANSTVMDLLERAGRSSS RVMTYRFPLKEELRPRLNHKPVSDPSCKLKMGDVVELTPAIPDKYLTEYREEIQRMYDRGLTVSGTGMVGSRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 390 | 390 | 1.3E-226 | – | |
| Gene3D | 1 | 68 | 68 | 8.7E-28 | – | |
| PANTHER | 1 | 390 | 390 | 1.3E-226 | – | |
| SUPERFAMILY | 1 | 69 | 69 | 1.95E-24 | – | |
| Pfam | 1 | 53 | 53 | 5.5E-17 | – | |
| SUPERFAMILY | 59 | 248 | 190 | 8.83E-56 | ||
| Gene3D | 72 | 202 | 131 | 4.2E-45 | ||
| CDD | 92 | 210 | 119 | 4.73741E-41 | ||
| Pfam | 112 | 221 | 110 | 2.7E-35 | ||
| SMART | 112 | 222 | 111 | 2.1E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Guanosine tetraphosphate metabolic process | The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates. |
Expression pattern of LotjaGi3g1v0414100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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