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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0416900 |
| Transcript ID | LotjaGi3g1v0416900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Brevis radix-like protein; TAIR: AT3G14000.1 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein; Swiss-Prot: sp|Q8GYL9|BRXL2_ARATH Protein Brevis radix-like 2; TrEMBL-Plants: tr|A0A072TLT2|A0A072TLT2_MEDTR Brevis radix-like protein; Found in the gene: LotjaGi3g1v0416900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:82342280..82346997) extracted from Lotus japonicus Gifu genome v1.2.
GTAACAAAGACACCAGTAATCAGCCACAAATAGTGCAATCAAGTACTATGTAGCAAAAATTCAGGATCATTTATGAAAAA TGAAAACGAAATTGAGGCAACTTTTGTGGAGAATAACATCAACATATGTGTGGGGGCAAAGTGAAGTGGATAAAAAATCA CAGAACTGAAGAGATGCTTCTTTTTTCAAAGCACATAACTTCACGCCGCTACACTCCCATTTTCACCTTTTCCCCTGTCT CTCATCTCTCTCTGTGTGTCATCTGAGTTAAACCATAGGGTGGCGCATGCATCATCTCTCTCTCACACCCTTTCTCTCAC TATATATAACACTTCACATTCACACTGTCACAAGCTCCACGCTGCACAATAGACACATAGTGGACCAGGTCATCACGCCA AACCTCACACGTTGTAGAGTTATCAGCTACATACATTCATAGAACCCGAATCTCAATGACCCTTCTTCACAAACACTGAA AAGGGTACTCGTTTCTAACTTGCACTCTATGTATTTGTTGTTATGCGTGTGTTGTGTGTCTTATGTTAAGTCTCCTCTGA CTCTTAGAGAGAGGCAGAGTCTAGTTTACTCCAACTCTGCTATATAAATAAATCATAAAGATTACATTTTTAATGCATTT TGATCTCATTGTCATAGATCTTTCACATCTCAGCCTACCCTTTTACCTTCTCCTTCTTTTTCTCCATCTCTTCCCTGAAG GGGTGTTTGAAATGTTGTGATTTTGGTCCTCATTGTTCATTGGATCACTGTTTGAATTTGACTGGGTTTGTGCACTGCAT CACATTCAATGGAGGATTTGGTTTTTGTGTTTTTGGGGTGGATTGAGTTGACTGCAGATCTTCTGTTTGTTTAATTGCTG CAAAGTGTCAACCTTTTTCTAATAACAGCATTGGTTTGATTTGGGGTGTAACTTGGTGATCTTTTGCCGTTTAGAGTGTG AATCAGGTGAAGGGTATCAGAAATGTTGACTTGCATAGCTTGTTCCAAGCAGCTTAATAATGGATCTCTTCAACCAGAAG AAGAGGAAGAAGCTGTGCAAACACCCAGCACCAAGCAAGCCATCAAGGCTCTCACTGCTCAGGTTAATTCACAAAGCCAT TTAGAACTGTTTTAGTAATCAATTGTGTAATTCTCTTCATATTTGAATGCTAATAGTTAGACAAGAGATTCAGAAACTCA TTATTTTGCTAACATGAATTTGTCAGTTTTATAAAAGTCCATGTTCTTGTTCCTGCCCTGGCATGTAGGATTTCATTTTT GTGATTCCTTGAAGTTTGAGGAACAAATCATGGAATAGAAGATACCCAATTGTGTTGTCTTTCAATGTTTTCTTATTTTG TTTTTCTCTGTGGTGACAAAGAGCTAGTTTTTGTTTACCAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCCTATAAG AATTGCAAGCCTTGTTCAAGATCTTCCAATAATAACAAGAATCGAAAGTATGCTGACTCTGATGTGGGCTCAGATTCAGC AAGGTTCCACATGGCCTACCACCGAACTGGTAGCTCCAATTCAACCCCAAGGATGTGGGGTAAGGAAATGGAAGCAAGAC TGAAAGGGCTTTCCAGTGGGGAAGGAACACCAGCATCAGTGAGTGGACGTACTGAGTCAGTGATGTTAACGGAGGAGGAT GAGCCCAGGGAATGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGTGGGAATGATCT GAAGAGGATACGGTTCAGGTACTACCCTTCTCTCTTGTATGTTTTGGAAATTGCACGAGCTCTTAGTGTAATTGATTCTA AATTCAAAATTAATTATGGGGAGAAGCTTATGCGAGTAGCTTCAGGATGTCAGAATTGTCATTTGGCAGAGGCAACTAGC TTTTTAACCAGTGTAACTTTGTCCTTTGGTTGTTTAAACTTTCACTTCTTTGATCTGGCATTAAGTACATGTTTGTTTGA GAGTGATCACATACTTTTCAAAGGCTGTCCAGATTCTAGATTGGCAGCATCTATCTTGTTTGTATTGCCTCTAGCTTTGT TCCACTGTCAGTAACTCATGCTTCACTGGTTGTTATAGAACGGGGCAAAAGCAAAAAGGGTTTTTATCTCCTAGCCTGAT CATTCAAATGCCCTCCCTCCTCTCATCCCCCAAAAAGAAAAAGGGAAAAGAACAAAGAACAGAGGGGGTGTAAAAGGGGG AAATAAAGTAAAGGAAGCTATGCAATTAAATAGGCCAGCCTCACTTTTGTGCCATAGCAATTTTCATTTTATGAAAGACA ACCAAATTTGTCAAGAACACTCCCCTCTGTTCTGAATTATAAAGGAAATTTTAATACACGAATTAAACTAGAAGGGTCCA TTCAATAAATAGTTTATGAACATAAATTCTACTTTATTGTTATTGAATATTTTCATTAACTTACACGATTTAACTATAAC TGGTACAAGTTATAACTTAAGGCACTTCTATCTTTCATAAAAGTTTAGGTTTCTATTAAGTCACTCTCACAACAATTTGG AAACAACGTATGGAGGTTGTAGTAGCATAAAATTTAACTGCTTTTTTTGCTCAACGCAACCATGTTGGGGGATCCAATTA TCCAAATCTCATTTGGACTTATAGTTCTGGGTAGGTAAAACTTCCAGGGGTGCATCAATTGGTAAATAATTTGTGTACCC TGAGCACAAACAGTTTCCCCAGAACCCAGGGGATGGAGCTGTTTATAAACTTTTTGAAATGTTTGGGTCTATACTACTAT ACCAGTGCTGTCTCCCAAAATGAGCTGACCATTTTAGTCCTATACAGGCTGAAAGTTTTTTGATGAAGGAAAATGTGCTT GTGTTAGATGTCAGGTTTCTTCTTTTATCTAATTATTTTATGTGTGTGATCAGCCGTGAAATGTTCAATAAATGGCAAGC ACAGAGGTGGTGGGCAGAGAATTACGACAAGGTCATGGAGTTGTACAATGTTCAAAGGTTCGATCAAAATGCAGTTCCTC TTCCAACCCCACCTAGATCTGAGGATGAGGTGAGGATTCACCTTTGTGTTATTTGTTGTTGAGAATTTCATGATTAAATG TGTATTCCAAACCAATGCATGAGTTTGAGTGGTAAACCTGGCTTTGAATTGCATGGAGTTGTGCAAGGATTGTCTTCCTA CTTAATCTGTGACCTATAAATTAACTAAGGCAGTGGATTGTTACCTTTTATATTCACATGAGCAATTCATTTAGAATATT CAGTTTTGAATCGACTTCTCTTTTTCTTTTTCAGAGCTCAAGGATTGAATCTGCGAGGGACAGCCCTGCCACTCCTCCTC TCAGTAAAGAGCGCCTGCCCCGTCATCTTCACCAACCAATGGGAATGGGTTACTCCTCATCAGATTCACTGGATCACCAC CAAAGGCAACCTCAACCTCGTTATGAAACAAGCGGTTTAGGATCAACACCTAATCTTTCCACCATTAGTGTGCCAAAGAC TGAGAGATCATCCATTGAAGGTTCTGTAAGGACAAGTTCCTCGGGAGAGGAAGATCGCTCAGGTGAGCTTTCAATCAGCA ATGCCAGTGAAATGGAAACCGAATGGGTCGAACAGGATGAACCAGGAGTATACATCACCATCAGAGCGCTGCCAGGTGGA GCTAGAGAACTTAGGCGTGTCCGGTTCAGGTATGCAGAAATCATAAGAATGGAAAATAAACTATTTTAATGCAAAAGTTT TTAATTCTTTGTAGCTAACTATCTTAACTGGTGCATGATACCTCCCAAGTCCTAACCAAGTTGTGTTGCTCCTGGATTTT TGAAAATTGTCTTTCCTTAATTTTGGTATCTTGTTTATGCTTAGTAATTTGATTCTCTGATTTTTTTAAGCTTCTAGGTT TTATAAATTAAATTGGAGGTATACACCAAATCATTAAGACGGATTTGGAATTTAAAAGTCTGTCATGAAACATGATTTAT AACAGGACATTATGGCATTGTTTGACCAAAGCTTTTGCTGTATATTCAAAAGCTGAATTTTTATGACCAATCACATTCAT TTAAATTAAAATTTTCTTTTGCACAGCCGCGAAAAATTTGGAGAAGTGCACGCCAGATTGTGGTGGGAAGAGAACCGTGC TAGGATACAAGAACAATACTTGTGATTGTGACTGTAGAAAAGAGCCCCTTACACAGACAACTGCTTCAGCAGGCTAACAG AGTACAACTTGAGAGCTTTACAGTATTGTGCATTCTAGATTCAGTTTCCTCTTTTCCAGTGGATAATTTGCAAGTAACTG CAACTTTCAACTTTGGAGTTCACTTTAGCTGTGGAGAAACGCAGGTGTTGGGAAATAATTAAATTATGATAGTGAGATTT TAGTTACAGTTAAACTTGTTAGGGAGATAGCATCAGTGTCTTCTTGCATTGGGAATTGTCTAGTGTTTTCCATCTTGTAT GAATTTTGAACTATTCCATGTGATGTAATATGTTTGGTCAATTGGTTCTATCAAAATGGTTAAACTGGAAATTTTGCAGA AAGCCAATCACTAGAAACTTTGATAACCAAGTACCTGTTTTCTTTCAATGCATCAGAAAACGTCTAGCAGTTTCTATAAC TGATCAAGAATTAGTGGCAGTCTATAAATAGAAGATAGGACAAAGATGGAGAGAATTTAATAGCTGTCATGATGGCAA
CDS sequence (LotjaGi3g1v0416900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGACTTGCATAGCTTGTTCCAAGCAGCTTAATAATGGATCTCTTCAACCAGAAGAAGAGGAAGAAGCTGTGCAAAC ACCCAGCACCAAGCAAGCCATCAAGGCTCTCACTGCTCAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCCTATAAGA ATTGCAAGCCTTGTTCAAGATCTTCCAATAATAACAAGAATCGAAAGTATGCTGACTCTGATGTGGGCTCAGATTCAGCA AGGTTCCACATGGCCTACCACCGAACTGGTAGCTCCAATTCAACCCCAAGGATGTGGGGTAAGGAAATGGAAGCAAGACT GAAAGGGCTTTCCAGTGGGGAAGGAACACCAGCATCAGTGAGTGGACGTACTGAGTCAGTGATGTTAACGGAGGAGGATG AGCCCAGGGAATGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGTGGGAATGATCTG AAGAGGATACGGTTCAGCCGTGAAATGTTCAATAAATGGCAAGCACAGAGGTGGTGGGCAGAGAATTACGACAAGGTCAT GGAGTTGTACAATGTTCAAAGGTTCGATCAAAATGCAGTTCCTCTTCCAACCCCACCTAGATCTGAGGATGAGAGCTCAA GGATTGAATCTGCGAGGGACAGCCCTGCCACTCCTCCTCTCAGTAAAGAGCGCCTGCCCCGTCATCTTCACCAACCAATG GGAATGGGTTACTCCTCATCAGATTCACTGGATCACCACCAAAGGCAACCTCAACCTCGTTATGAAACAAGCGGTTTAGG ATCAACACCTAATCTTTCCACCATTAGTGTGCCAAAGACTGAGAGATCATCCATTGAAGGTTCTGTAAGGACAAGTTCCT CGGGAGAGGAAGATCGCTCAGGTGAGCTTTCAATCAGCAATGCCAGTGAAATGGAAACCGAATGGGTCGAACAGGATGAA CCAGGAGTATACATCACCATCAGAGCGCTGCCAGGTGGAGCTAGAGAACTTAGGCGTGTCCGGTTCAGCCGCGAAAAATT TGGAGAAGTGCACGCCAGATTGTGGTGGGAAGAGAACCGTGCTAGGATACAAGAACAATACTTGTGA
Protein sequence (LotjaGi3g1v0416900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTCIACSKQLNNGSLQPEEEEEAVQTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCSRSSNNNKNRKYADSDVGSDSA RFHMAYHRTGSSNSTPRMWGKEMEARLKGLSSGEGTPASVSGRTESVMLTEEDEPREWIAQVEPGVLITFVSLPQGGNDL KRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFDQNAVPLPTPPRSEDESSRIESARDSPATPPLSKERLPRHLHQPM GMGYSSSDSLDHHQRQPQPRYETSGLGSTPNLSTISVPKTERSSIEGSVRTSSSGEEDRSGELSISNASEMETEWVEQDE PGVYITIRALPGGARELRRVRFSREKFGEVHARLWWEENRARIQEQYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 368 | 368 | 2.2E-215 | – | |
| PANTHER | 1 | 368 | 368 | 2.2E-215 | – | |
| Pfam | 22 | 58 | 37 | 3.7E-17 | ||
| ProSiteProfiles | 136 | 191 | 56 | 31.244 | ||
| Pfam | 136 | 190 | 55 | 7.1E-28 | ||
| MobiDBLite | 198 | 315 | 118 | - | – | |
| MobiDBLite | 259 | 291 | 33 | - | – | |
| MobiDBLite | 298 | 312 | 15 | - | – | |
| Pfam | 312 | 367 | 56 | 1.8E-27 | ||
| ProSiteProfiles | 313 | 368 | 56 | 32.673 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0416900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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