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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027988
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.511s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0228699.1
n.a. PREDICTED: protein BREVIS RADIX-like [Glycine max] gi|356559081|ref|XP_003547830.1| chr0 118307982 118315035 +
2 domain predictions
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Lj3g3v2645610.1
n.a. PREDICTED: protein Brevis radix-like 2-like [Glycine max] gi|356519574|ref|XP_003528447.1| chr3 32294618 32298517 -
2 domain predictions
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Lj4g3v2179280.1
n.a. PREDICTED: protein Brevis radix-like 4-like [Glycine max] gi|356547921|ref|XP_003542353.1| chr4 30154384 30160448 +
2 domain predictions
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Lj5g3v1959100.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr5 27717103 27724815 -
2 domain predictions
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Lj6g3v0028840.1
n.a. Serine/threonine protein kinase Nek9 [Medicago truncatula] gi|357439465|ref|XP_003590009.1| chr6 476798 483158 +
2 domain predictions
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LotjaGi1g1v0049200.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1M739|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6825463 6835374 -
2 domain predictions
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LotjaGi1g1v0049200.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833767 -
2 domain predictions
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LotjaGi1g1v0049200.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833780 -
2 domain predictions
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LotjaGi1g1v0049200.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7K368|G7K368_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833926 -
2 domain predictions
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LotjaGi1g1v0049200.5
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|A0A0B2PRJ1|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200 LjG1.1_chr1 6826247 6833987 -
2 domain predictions
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LotjaGi1g1v0452300.1
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7KX16|G7KX16_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0452300 LjG1.1_chr1 95218471 95226158 -
2 domain predictions
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LotjaGi2g1v0134600.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A0S3TAW6|A0A0S3TAW6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48800529 48812331 -
2 domain predictions
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LotjaGi2g1v0134600.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48801389 48810020 -
2 domain predictions
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LotjaGi2g1v0134600.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1JDG4|I1JDG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802245 48810028 -
2 domain predictions
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LotjaGi2g1v0134600.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7K743|K7K743_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0134600 LjG1.1_chr2 48802439 48810020 -
2 domain predictions
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LotjaGi3g1v0416900.1
n.a. Brevis radix-like protein; TAIR: AT3G14000.1 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein; Swiss-Prot: sp|Q8GYL9|BRXL2_ARATH Protein Brevis radix-like 2; TrEMBL-Plants: tr|A0A072TLT2|A0A072TLT2_MEDTR Brevis radix-like protein; Found in the gene: LotjaGi3g1v0416900 LjG1.1_chr3 82342157 82347029 -
2 domain predictions
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LotjaGi3g1v0416900.2
n.a. Brevis radix-like protein; TAIR: AT3G14000.1 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein; Swiss-Prot: sp|Q8GYL9|BRXL2_ARATH Protein Brevis radix-like 2; TrEMBL-Plants: tr|A0A072TLT2|A0A072TLT2_MEDTR Brevis radix-like protein; Found in the gene: LotjaGi3g1v0416900 LjG1.1_chr3 82342280 82346997 -
2 domain predictions
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LotjaGi4g1v0145500.1
n.a. Protein BREVIS RADIX; TAIR: AT1G31880.2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein; Swiss-Prot: sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX; TrEMBL-Plants: tr|K7MGD2|K7MGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0145500 LjG1.1_chr4 23502357 23509692 -
2 domain predictions
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LotjaGi4g1v0145500.2
n.a. Protein BREVIS RADIX; TAIR: AT1G31880.1 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein; Swiss-Prot: sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX; TrEMBL-Plants: tr|K7MGD2|K7MGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0145500 LjG1.1_chr4 23502839 23505068 -
2 domain predictions
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LotjaGi4g1v0145500.3
n.a. Protein BREVIS RADIX; TAIR: AT1G31880.2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein; Swiss-Prot: sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX; TrEMBL-Plants: tr|K7MGD2|K7MGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0145500 LjG1.1_chr4 23502839 23505071 -
2 domain predictions
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LotjaGi4g1v0145500.5
n.a. Protein BREVIS RADIX; TAIR: AT1G31880.2 DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein; Swiss-Prot: sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX; TrEMBL-Plants: tr|K7MGD2|K7MGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0145500 LjG1.1_chr4 23502839 23507832 -
2 domain predictions
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LotjaGi4g1v0185000.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7L9S7|K7L9S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0185000 LjG1.1_chr4 40595021 40625396 -
2 domain predictions
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LotjaGi4g1v0327400.1
n.a. Brevis radix-like protein; TAIR: AT5G20540.1 BREVIS RADIX-like 4; Swiss-Prot: sp|Q8GZ92|BRXL4_ARATH Protein Brevis radix-like 4; TrEMBL-Plants: tr|K7LYZ0|K7LYZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0327400 LjG1.1_chr4 70543931 70550296 -
2 domain predictions
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LotjaGi4g1v0327400.2
n.a. Brevis radix-like protein; TAIR: AT5G20540.1 BREVIS RADIX-like 4; Swiss-Prot: sp|Q8GZ92|BRXL4_ARATH Protein Brevis radix-like 4; TrEMBL-Plants: tr|K7LYZ0|K7LYZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0327400 LjG1.1_chr4 70544122 70550249 -
2 domain predictions
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LotjaGi5g1v0293400.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400 LjG1.1_chr5 61088752 61096822 -
2 domain predictions
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LotjaGi5g1v0293400.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q17TI5|BRX_ARATH Protein BREVIS RADIX; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400 LjG1.1_chr5 61089537 61092420 -
2 domain predictions
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LotjaGi5g1v0293400.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; TAIR: AT5G42140.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|V7BF38|V7BF38_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0293400 LjG1.1_chr5 61089537 61095152 -
2 domain predictions
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LotjaGi6g1v0005200.5
n.a. Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.2 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|G7I4N4|G7I4N4_MEDTR Chromosome condensation regulator RCC1 repeat protein; Found in the gene: LotjaGi6g1v0005200 LjG1.1_chr6 1030511 1037347 +
2 domain predictions
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LotjaGi6g1v0181100.1
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1N146|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100 LjG1.1_chr6 47304519 47316040 +
2 domain predictions
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LotjaGi6g1v0181100.2
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1KXU8|I1KXU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100 LjG1.1_chr6 47307427 47315531 +
2 domain predictions
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LotjaGi6g1v0181100.3
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1N146|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100 LjG1.1_chr6 47307429 47315531 +
2 domain predictions
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LotjaGi6g1v0181100.4
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1N146|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100 LjG1.1_chr6 47307430 47315531 +
2 domain predictions
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LotjaGi6g1v0181100.5
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|K7MRH4|K7MRH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100 LjG1.1_chr6 47307473 47315531 +
2 domain predictions
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LotjaGi6g1v0181100.6
n.a. Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|I1N146|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100 LjG1.1_chr6 47307658 47315531 +
2 domain predictions
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LotjaGi6g1v0227200.1
n.a. Brevis radix-like protein; TAIR: AT5G20540.1 BREVIS RADIX-like 4; Swiss-Prot: sp|Q8GZ92|BRXL4_ARATH Protein Brevis radix-like 4; TrEMBL-Plants: tr|K7LYZ0|K7LYZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227200 LjG1.1_chr6 53305721 53314218 -
2 domain predictions
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