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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0424400 |
| Transcript ID | LotjaGi3g1v0424400.8 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0424400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83372905..83376429) extracted from Lotus japonicus Gifu genome v1.2.
CTCACACACTCATCACGTGATCTCTCTCACGCCTTTCACTCTCATTCTCTGATTTCACGATACAGCCATACAGGACGCAT TCTCACCGGCCACCACCACGCCGTCCGCCGCACCACCACGCCGTCCGCCACACCACCACTGTCCAGCCGTGCCTCTGGCT CTGCGGTTCTACTTCTACAGGTATGGCTGATTTGAGTGATTTCCCTAACCCTAATTTCCTCAAATGTCATAATTTCTCAA GCATGAATCATGATACATGAAATCAAAGTAGAAGAAAGAAACCTCTAATCACAGATTCACGGTATTGTAAACTGAAATTC TTTGTTCCTTGTGATTGGGTAATTTGGTACTGCAATTCCTTTCCCAAGGTGTCATGGCTCTTGTCTGCTACTTGTTTCTG CTTCAGGTCCCTGTTTTGCAGTTTTGCTCCAAGTTGAATTCGTGGAAGTTGGCTTTGTGTTTTGATAATTGGGTATGCGT TGGAATTTTAGATTGAGGATATATTGATAATTGATCCAATTGTGTTAAGGTTGTCATGTTGTGTGGATTGAGAACCTTTG CTGTTTTTTTTTTGGGTCCTTTTGTCTGTTGCATAAATAGCAGTTTAGGCACTTTTTTCCTATTCTCTCATGGTTTTATC TATAATATTTTTCTTTTAGCCTATGATTGCTTTTATGTTTAGCCTCACTGATATTCAAGGTCTGGATCCGCCCCTGTGCT GAGCCCTAGTCTCCCTCTCCCTAAGGAATTGGTAGAGGCAATTCTGCTGAAATTGCCGGTGAAAACTCTTATGCGCTTGA AATGTGTTTGTAAGTCATGGCTCTCTTTTATTTCTGATCCCAAATTTGCTAAATCCCATTACTATCTTGCTGCTGAACCC ACCCATCGATTTCTCTTCATATCATCATCTGGTTCACAACTGCAATCCATAGACATAGAAGCATCACTTGATCACTTTGA TCATTCTTCACTATCAAATCACATTCTTCCACACCCATTATCCGGACACCAATTTGATAATTCGTTATATAATAGCATTC TAATTTATGGTTCTTGCCGTGGATTTTTACTTTTAGACCACGGACATCGTAATCTCATTGTGTGGAATCCATCAACGGGT GTTCGCAAACCAATATCGTACCCAAATGTTAAGTTCATGTATGAATCCTTATCAGGATTTGGGTATGATGCATCAACTGA TGATTATCTGGTTCTTCTTATGTCAAAGCCCAAGATTCGATCACATTCTTCTGATTGGAAAACAGATATTGCGATTTTCT CTTTGAAAACCAATTCATGGGACCAGATTAAGCGTGTCAAATTCCCATATCGGAGTTGCCATCCTATAACTGATGCTGGG TTACTTTTAAATGGAGCTCTTCATTGGTTGGTTTATTCTCGTGATGTGCATGGGGTTGTAATCATTGCCTTTGACATGAT TGAAAAGAGTCTACTAGAGATTCCTTTACCTTCTGGTATAGACAAGGGATTAGCATTTCAATTTAGAGGAGGACTTTATT TGAGGGTAATGGGAGATTGTCTTTGTCTGTGTTATACTGGTTGTAGTTATCGCGTAATGGCTGAGATATGGATGATGAAA GAGTATAAAGTGCACTCGTCTTGGACTAAGTCATATGTTCTGCCCACCGATAACATCCCTCATAACTTCTTTCTTCCAAT GAGCTTCACCAAATCTGAAGGATTATTTGGATCAAATTGCAGTGGAAGTTTAGTGAAGTTTAATAGCGAAGGAGTTTTAA CTGAACAAGCCGCATGCAGAATTAAGTCGTTCAAATCAGATCTATTAGAGTTTGCGGTGTATAAAGAAAGCCTACTCTCC CTCCCTGGTGACTCTGGGGAATTAAGTGAAAATGGCCAACAATAATAGACTAGAAGAATTACGGTACGCAATGCTCTGCT ATCCTTTTCACCATTCTGTTACTTTACATGTTTGCATTGTGAAAAATTAAAAGCTACATTAGTACATACTATTTTGCAGT TGCGCCTCTATCCCTTTTGCCCCTCTCAATTAATGTTATGATTTTGACAGGCAATTAGATCGATATATAATGGTTGCCAG CCTTATAAGTTATATCTATATTTCTTCCTTATATGTCTTTCTTTCTTGATTCGTGATCTTCATCAGAAGTTTTATAACAT TAGATATATGGTGGTTTGGTTTTAGTCCTTGTTAGGGCCTAGCTTTACCTTAAATTTTATCCCCTATATAGTGTATTGTG TAGTAACTAGTATTTATTACGAGCTGAAATCTCAGCTAAAGTGATCAAAACAAAGATATAACATAAAAAACACAAAAACA AGAGTGTATGAGTTGGTTATGGTTAGTTGGTTACTTTGGAGTTGAAAGCATATAATTGTTTAAGGGAGGATACAATTCTT TGTAATTTGGTTCCATTCTATCCATTCCAAAAGCTATATTTGAATGCTGTTAGGAAAAACAGTGTGTACAATCTAGCATT GAAAGGTTGTAAAGAACATAATGTCTAATATTCCCTTCCAAAACCAACAATGTCTATGGTTGCTTCATTTTGAACAACAA AAGGAAATTGTAGCAGGTGTAGCCATGTTACTTTAGTAGTTTTGGTGTGGGTGTGGCTAATGGCTTTGGTCAATTGGTCT CAGTTATGTTGCTGCTCTGAAACAAAATGGGGCAGTTGAGCTGTCTCTCACTCCTTGGCATGATCAAAATGAAACAGATG ATTAATTAGTCCATTTTTTTTATTTCATAGATTTTAATTACTATAAAATATTTTTTATTACAGTAGTCTATTGAAACTAT ATGATGGAAGGAATGGGAGAGAGTATATAGGGGCAGTTGGAGGCCGGAGGGTGAGTAGACAGTAGTGGTGAGCTGAGTAG TTTAATACAGGATGAAGGCTTGGTTCCCAATTTTACAATGATGTTAAAAGAGAAGTTTAGAATGTGATTTAATTGTTAGT ATAATAGAGTCTTGATGCAGATAGAGATCATGAAAATACTGATAATATTGATGTACAATGCCATGCCTAATCAAATTTCT TTTTGTTTTACCAGGGGTTGGGGAAAGAGTGGTTCGACCATGACTTATTTCTCAAGGATATCACTCAGCTCTTTTACCAC TTGAGCTATCTATAGAGGGGGGACTAATCAAATTTCATTATCTCAACAGAAGAACTGATGCTCAATGGGCTTGAAAGTGG CTTTAGTTATGCATCTCATTAATTGCTGGAATTCTAGAACTAGCAGTAGCATGGTTTCAGTTTAGTTTTCTTTTCATACT TGAAACAATCATTGTTGTTGCATATTTCGTTCTTTAATGATCAAAATTACAATGCAACTCACTGGTAGGTGAGTGTTGAT TTTATCCGTAGTTCCTGGAAGTCTATTGTCAGGATATTTTATCAAACCCAAATGATATTTTTTCCGATGAAATACATTTA AATGTACTGCTACAGTTTACATTTATATTGACCAAGATTATTCAGGTCTATATACTCTACAATTTATACCATATTTATAC CGAGA
CDS sequence (LotjaGi3g1v0424400.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTTGAAATGTGTTTACCACGGACATCGTAATCTCATTGTGTGGAATCCATCAACGGGTGTTCGCAAACCAATATC GTACCCAAATGTTAAGTTCATGTATGAATCCTTATCAGGATTTGGGTATGATGCATCAACTGATGATTATCTGGTTCTTC TTATGTCAAAGCCCAAGATTCGATCACATTCTTCTGATTGGAAAACAGATATTGCGATTTTCTCTTTGAAAACCAATTCA TGGGACCAGATTAAGCGTGTCAAATTCCCATATCGGAGTTGCCATCCTATAACTGATGCTGGGTTACTTTTAAATGGAGC TCTTCATTGGTTGGTTTATTCTCGTGATGTGCATGGGGTTGTAATCATTGCCTTTGACATGATTGAAAAGAGTCTACTAG AGATTCCTTTACCTTCTGGTATAGACAAGGGATTAGCATTTCAATTTAGAGGAGGACTTTATTTGAGGGTAATGGGAGAT TGTCTTTGTCTGTGTTATACTGGTTGTAGTTATCGCGTAATGGCTGAGATATGGATGATGAAAGAGTATAAAGTGCACTC GTCTTGGACTAAGTCATATGTTCTGCCCACCGATAACATCCCTCATAACTTCTTTCTTCCAATGAGCTTCACCAAATCTG AAGGATTATTTGGATCAAATTGCAGTGGAAGTTTAGTGAAGTTTAATAGCGAAGGAGTTTTAACTGAACAAGCCGCATGC AGAATTAAGTCGTTCAAATCAGATCTATTAGAGTTTGCGGTGTATAAAGAAAGCCTACTCTCCCTCCCTGGTGACTCTGG GGAATTAAGTGAAAATGGCCAACAATAA
Protein sequence (LotjaGi3g1v0424400.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLKCVYHGHRNLIVWNPSTGVRKPISYPNVKFMYESLSGFGYDASTDDYLVLLMSKPKIRSHSSDWKTDIAIFSLKTNS WDQIKRVKFPYRSCHPITDAGLLLNGALHWLVYSRDVHGVVIIAFDMIEKSLLEIPLPSGIDKGLAFQFRGGLYLRVMGD CLCLCYTGCSYRVMAEIWMMKEYKVHSSWTKSYVLPTDNIPHNFFLPMSFTKSEGLFGSNCSGSLVKFNSEGVLTEQAAC RIKSFKSDLLEFAVYKESLLSLPGDSGELSENGQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 5 | 209 | 205 | 1.8E-26 | ||
| PANTHER | 7 | 257 | 251 | 1.5E-58 | – | |
| PANTHER | 7 | 257 | 251 | 1.5E-58 | – | |
| Pfam | 102 | 210 | 109 | 2.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0424400.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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