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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0425900 |
| Transcript ID | LotjaGi3g1v0425900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcineurin B, putative; TAIR: AT4G33000.1 calcineurin B-like protein 10; Swiss-Prot: sp|Q3HRN8|CNBL9_ORYSJ Calcineurin B-like protein 9; TrEMBL-Plants: tr|A0A151SHN3|A0A151SHN3_CAJCA Calcineurin B-like protein 10; Found in the gene: LotjaGi3g1v0425900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83556485..83560343) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAGCAAAAGGGGTCTCAAACAAAGAATATTTTTTCTTCATTCTTATTTCACTAACTTTTCTTTTATTATCATGTCAC CTATCATACCTCTTATTTCTTTCTCGTTTGTTCTTTAATATGTTAATAGAGGTGTGATTATTTATAGGGGTTCTCTCCCA ACATGTTTCTTTCACGTCAAATCACCTTGTGGCCTTTCAGCTCAAAACTTATCATTATCCTTTCTAATAATAAAACAAAA AATATTCCTAAATGGGTCATTACTCATTAGATTAGAGGTGATGTCTTTTCCTCTTAACCAAAAAAAGATTAGTTGTCATG TTAAAATAAACCTCAGAAAGTTTAGGTTTGCATGTCTGTCCTATAATGATAATGATATGGACTTGCCTGATGACTCGTTG TCTCTGGTAATTCAATTCTTGTCTTTTTTTCTCGATCTCCATTTTTGTTTCTCTAACAATGACTTTGAATCTGGTTTGAC TCAGACATCGAGCTTAACTATCGGCGAGGCGCTCTGCGCGGTCTGCATACCGTTAATCGGAATCGTCGAAGCTTTGTTTT TCGGGTTAGCTGGTTGCTTCGATTTCCATCGTGGAACCAACAAGGTCAACAACAACAACAACAACAAAATCTCTTGTTCC TTCCACGATTTTCTTACCCTCGCCAAAAACTCTCCATGTTCGTCTCTCAATTTCTTCTTCCTTTTTCAATTTTCGCATCT TTCGTTTCGGAATTGAGTGAATTCATGGCATTGTGGTTTGGTTTGGTTTTGTTTTGTTGCAGTTACGGTTAATGAAATTG AGGCGTTGTATGAGTTGTTCAAGAAATTGAGTAGTTCAGTCATTGATGATGGTCTCATTCATAAGGTAATTTCACTGCTC CAATTTCTGATTCTTTGACTTTTCAATTCAATGAAGTCATTTGGGAATAATTGCTTAGATTACGATCTTGAAATGTTTTT TTGCATTTTGAGTTTGTGCATTTTTTAGGAAACAAAATTTTGTGTTGGTTGGTTGTTGTTGACTCTATTAGTTTAATCAT TTCTTGCATCTTGAGTTTGTGCATTTTTAACTCTACTTTGTTTATGTTATGAAGGAAGAGCTCACACTGGCATTGTTGAA GACCTCAACTGGCAAGAATCTTTTCCTTGATAGGGTATATAAGCATTTTTCAGTTTTTATTTTTTCTTGGTTTAGTTTTA GAAACTTTGTTACATTATGGAAAAATATTTGATTTGTAAGGAAAATTTTTAAGGGACTAAATTGGTCACGCCAGTGGCAC CTCTCATACTTCCTCTTTAAACTAAAACTCCGAAGCTTATTCGTTCTGCCCCCTCAAGATCTTTGATCGAGTTCCACCAC TGCTGCCTGCTATTTGATATCTCCTGTTTAATTGAATTCTATTATTGAACTTAAAATATGGTTTCTGTGTTATGTAAGGT TTAAAACTCTAAAGCTGTATTTGTTTTAGCTTTTAAGTTACACATGATGCTTGTAAGTTTTGTTTCTATGTTCGGAAATA TGAGGCTGGTCCCAGAAGGCAAATTTCTGCTCATAACTTAAAAGTGAATATTCAAGGCTCCAATTATGCATCTTTCCGCT CTGCCTTTTCCTTCTAAATTCCCGGTGGAACATTACCGGCTGTCCTACAACCATGAATGCTTTTACTAGTTACTAGTCCA ATGTTATGTGAACAACGATTGTTGTCACACAAAACTCTGGTCTTGAATTGTTATGATGGATTGAATATTTTCCATAGCTT TGTTTGCCATCTGAGTGAACTCTTTGAAAGATCAAATTTGTATATTATCTTTTTTTTGTACAGATATTGAAAGGTGTATC TTACTAATTGACAAATGCATTTCTGATACTTCAATAAATAGCTGTGCATTGTTAATCCTATATGGCATAAGCAATGGTGT CAGGAGATGGTGTTATGTGCATATCCTCCACATTTCCCTTCCCTTTCGAGAATATAGTGTTGTGTTTCTGCAGATATATA CTTGACTTGAAGAAAGATCTGTTATTTACTGCTATTCTTCCTCTCTGACCTGTATAATTGATTCCCTTTTATTGCTCTCA AACTTTTATAGGTGTTTGATCTATTTGATGAGAAAAGAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGT GTCTTTCATCCTCATACGCCTTTGGAGAAGAAAATTGATTGTAAGACTTCAGTTAGCATTTTGCAGTTGGATTTTTATAT TATCCATTTTAATGCTAGAAGTATTAAATTTTGAATAAAATCTTTTTTTTTCTTGGTTTGTTCACAGTTGCTTTCAGATT GTATGACTTGAGACAAACCGGATACATTGAACGAGAAGAAGTGAGTACCTTGGCATATCCAGTTTATGAAGATGCCATTG AATTAAACATATTTTTGCTATCCTGTTCCTAGTATAATATTGCACTAGAATTCTCTTAGTGCAATATCAACTTGATTTGA CAAGTCCCCGAGGGTTAGCTCAAGTGGTAAGAGCTAGGGGACATAAGGGTGGGGAGGGGAAGGTCCAGGGTTCGAACCCT GGAAGGGAACTTTGAAGGGATTTTCTAACTTACTAACAACTAACCACTAACATTTGCTTATAAAAAAAAAAACTTGATTT GACAAGTTTCATGAAGAAAAGTGGTAACTTGCCCCCCCCCCCTCCCATGGTTTTCTGTTTACCATATCTGGATTGTTTTG CTAACCTGCAACGCATTCCAGGTTAGACAAATGGTGGTTGCCATTTTGTCAGAATGTGGCATGGATCTAGAAGATGAAGT CCTTGAAAGCATTATTGATAAGGTAATTGTTTGCAGGAACATTTCTTGTCCCTCTATGTTGATTTAAGTTTGGATCATTT TAAGTAACCTTTTATTTTTTTAAAAAAAATTCAGACATTTCAAGATGCTGACACCGATGGGGATGATAAGATATGTAAAG AAGAATGGAAGGAATTTGTCCTGCGGCATCCAACACTCTTGAAGCACCTGACTCTTCCTGATCTGAAGTAATTTACTCTC GTGCCTTATCTTTTTCCATCATAGTTGAATTTCTGTCATGTCATTATTATCTATGAATCAGCAAACAGTATATTGAGAAG TAGACAAAGCAAGAAAGGGATGTGGTTTTTCTTATTGCTAATGTAAAATTTCTTCATACTATCCCATTTAAACATTAGTC AAATTTTAACTCATTTTAATAACCATCACAGCAAACTTATGTTTAAATTTGATGATTTGCATTGCATTATTTGGAACTGA GTTCAAGCTTTCCATTTCTTTGTTCACTGGTCAGGGACATCACCACAGTATTTACCAGTTTCATTTTCAACACTGAAGTT GATGATTCCCACTGGCAACTCAACAACAATCATAAACACTAAGGAGGAGGAGGAGGAGCTTCTTCTGTTGCATTAGTGGT TGCTATTCTGAGAGTTATATTCTGGCGGTACCACTCCATCAATGTTCATTCCGAGCAGAGATAATTCATGGAAGTGGACA AACCCACCAACCCTTAAGCAAAGGGGTGTTCTTGAATCTGATCCAAACCGAGCAGTCCAGTTAAATTAGATCAAATATTG CACTAACAGTGTAAAAGTTTTGCATAGTCATTCAATTAGATACCATTAATTTGCCGTGTCACTATTAAATTTGAATTAAA AATATTTAAAGTGGAATATGAAGAGATGTGATTGGAAGCATGTGTAGAACTTTTCCACTGAGGGTCAATGCATATGTTTA TTAATTATTGTACACCTTAAGTGTAAAAATTTTCTTGTAAATATCAGAAAATCATTTGAAAAACTGAAAATAAATATGAT GTGTTTATGGAAATATTAT
CDS sequence (LotjaGi3g1v0425900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTTCCTCTTAACCAAAAAAAGATTAGTTGTCATGTTAAAATAAACCTCAGAAAGTTTAGGTTTGCATGTCTGTC CTATAATGATAATGATATGGACTTGCCTGATGACTCGTTGTCTCTGGTAATTCAATTCTTGTCTTTTTTTCTCGATCTCC ATTTTTGTTTCTCTAACAATGACTTTGAATCTGGTTTGACTCAGACATCGAGCTTAACTATCGGCGAGGCGCTCTGCGCG GTCTGCATACCGTTAATCGGAATCGTCGAAGCTTTGTTTTTCGGGTTAGCTGGTTGCTTCGATTTCCATCGTGGAACCAA CAAGGTCAACAACAACAACAACAACAAAATCTCTTGTTCCTTCCACGATTTTCTTACCCTCGCCAAAAACTCTCCATTTA CGGTTAATGAAATTGAGGCGTTGTATGAGTTGTTCAAGAAATTGAGTAGTTCAGTCATTGATGATGGTCTCATTCATAAG GAAGAGCTCACACTGGCATTGTTGAAGACCTCAACTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTATTTGATGA GAAAAGAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTCATACGCCTTTGGAGAAGA AAATTGATTTTGCTTTCAGATTGTATGACTTGAGACAAACCGGATACATTGAACGAGAAGAAGTTAGACAAATGGTGGTT GCCATTTTGTCAGAATGTGGCATGGATCTAGAAGATGAAGTCCTTGAAAGCATTATTGATAAGACATTTCAAGATGCTGA CACCGATGGGGATGATAAGATATGTAAAGAAGAATGGAAGGAATTTGTCCTGCGGCATCCAACACTCTTGAAGCACCTGA CTCTTCCTGATCTGAAGGACATCACCACAGTATTTACCAGTTTCATTTTCAACACTGAAGTTGATGATTCCCACTGGCAA CTCAACAACAATCATAAACACTAA
Protein sequence (LotjaGi3g1v0425900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFPLNQKKISCHVKINLRKFRFACLSYNDNDMDLPDDSLSLVIQFLSFFLDLHFCFSNNDFESGLTQTSSLTIGEALCA VCIPLIGIVEALFFGLAGCFDFHRGTNKVNNNNNNKISCSFHDFLTLAKNSPFTVNEIEALYELFKKLSSSVIDDGLIHK EELTLALLKTSTGKNLFLDRVFDLFDEKRNGVIEFEEFVHALSVFHPHTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVV AILSECGMDLEDEVLESIIDKTFQDADTDGDDKICKEEWKEFVLRHPTLLKHLTLPDLKDITTVFTSFIFNTEVDDSHWQ LNNNHKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 38 | 38 | - | – | |
| Phobius | 39 | 57 | 19 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| PANTHER | 66 | 321 | 256 | 2.2E-144 | – | |
| PANTHER | 66 | 321 | 256 | 2.2E-144 | – | |
| Phobius | 77 | 97 | 21 | - | – | |
| Phobius | 98 | 327 | 230 | - | – | |
| Gene3D | 123 | 317 | 195 | 2.6E-63 | – | |
| SUPERFAMILY | 127 | 308 | 182 | 6.05E-44 | ||
| ProSiteProfiles | 173 | 208 | 36 | 12.421 | ||
| SMART | 177 | 205 | 29 | 0.05 | ||
| CDD | 178 | 239 | 62 | 8.68789E-7 | ||
| Pfam | 179 | 198 | 20 | 0.044 | ||
| PRINTS | 181 | 202 | 22 | 3.0E-9 | – | |
| ProSiteProfiles | 210 | 245 | 36 | 11.919 | ||
| Pfam | 213 | 282 | 70 | 9.8E-9 | ||
| SMART | 214 | 242 | 29 | 1.2 | ||
| CDD | 214 | 283 | 70 | 5.67742E-10 | ||
| PRINTS | 228 | 246 | 19 | 3.0E-9 | – | |
| ProSiteProfiles | 254 | 289 | 36 | 11.166 | ||
| SMART | 258 | 286 | 29 | 0.031 | ||
| ProSitePatterns | 267 | 279 | 13 | - | ||
| PRINTS | 274 | 294 | 21 | 3.0E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi3g1v0425900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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