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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0428400 |
| Transcript ID | LotjaGi3g1v0428400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT4G03220.1 Protein with RNI-like/FBD-like domain; Swiss-Prot: sp|Q9ZR09|FDL25_ARATH Putative F-box/FBD/LRR-repeat protein At4g03220; TrEMBL-Plants: tr|A0A0B2PPL9|A0A0B2PPL9_GLYSO F-box/LRR-repeat protein 13; Found in the gene: LotjaGi3g1v0428400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:83965966..83968932) extracted from Lotus japonicus Gifu genome v1.2.
CTCTAAATTTCTCAATTCTCATGATGAAGAAAGCTTCCAAAACTGATATGGATCGTATCTCGAATTTGCCTGAAGATATC GTCCATGATATTTTACGTCGACTCACCATGTTAGATATTGCTCGAACCAGTTGTCTATCCAAGGCATGGAAAACCCTTGG TGTTTCTCTTCCCTACTTGAATATCGACCCGCAAGAGTTTGGACATTACCGTGATCTTCCTCACGGGTGGTTCAAGGATT TCATGGAAAACAAAATGAGGAGCATGAGAATTTGTATGAGGATTTCATTTGAATTTGTTTTCAAATTCAAGCTATGCTTA GATCTTGCACTAGTAAAGAAATATGTACAGGAGATTGAAAGGTACATAAAGCTAGTATTCGAAACTGGTACTATCAAAGA GTTCGAGTTCCAAATCACCACGGACTATTATTATAGGTACGCGTTTCCTCGTCACAAGTACACATTTTCTCATCACATCT ATAATGTTGAGACCTTAAATGTGCTAAGGTTAAGTGGTATGACACTAGCACAACCCTTTGGCGATATGAAGCTCTCAAAC CTTCAGATTCTAAGTTTAGAAGAGGTGAATGTACGAGGACAGACTGGCATTGGTTGGCTTTTTACTAGTTGCCCTATGAT AAGGGAATTAAGGCTTGTAAATATTAATTTGTCACTAGCAGAACCCTCTGAGGATATGAAGCTCTCAAGCCTTCAGATAC TAAGGTTAGAAAAGGTGAAGGTAGACCTGCAACATGGCATTGATTGGTTCTTTACTAGTTGCCCTATGCTAAGGGAAATA AGGCTTGTAAATATTGGTAATTTGAAGAATTTGAAGGTGTATGGTCTTAGTCACCTCAAACATCTAGAGATTGATTCTTG TCACGAGCTCAGGAGTGTTGAAATCCAAGCGCCAGACCTTCAGAATCTAGTCTTGTCTGATGAGATCATGAGTTATGGAT TTATTTTGGATTTGAAAATAGACTCACAAACTTGTAAAAACTTAAGGAAACTAACGTTGTGCAATTCCACCATACAAGGT TCTACCTTCAGCCTTGTGTTTTCTGAATGCATAAACGTTGTGTCCTTGGTGCTGGACGGGTGTATGAATTTTTTTGAGAT AAGAATTTCTAGTCAGAAGCTGAGGAAACTTGTTGTGACAAGATGCTTCAATCTTTGTGTGACTGATGTTAGTGCTCCAA ATTTGACTTCCTTCAGTTTCTGCAATTTCCTAACCACCAAATTTTGTGATGGCTCCCGTATTTCTGTCCAACTCCTTGAG AAAATTCGCCGCCGGCAAGAATGCATGCTTGACTTTGGACAAACGCTCTGCACCAAAAGTATATGGATATCTCTTTGGTT TCATAAATTTAAGGACATGCAAGGCCAAAAGATGGTTATGTTCCCCAAGGTAATTAAATAACCTCTACCAGTCCTTTTCT TTGTTCTTTATTTCAATTTCAATTTCTTTATTATGATTTTGTCTCCCCTGGACCAAGAAAAACATTGTTCACAAGTTAAA AGGGTTTTTGTTTTTCCACCCTTGATTTAGAGCGGGAAGTATGATGTCGTCGTATTAGAAGATTGGAGCTCTATGGCAGA ACTTCAGCTTATGTCTAAGATGTGTGAAGCAGCTGCAAAAACAATTATTACAACTATGAGTTTCCTTGATCTAGCTGATT ACATGCTTGAGGGCTTTTATGCTGGTAACAAGTTGGAAAAAGTTTTAACAATCTCATCCAATGATGAAAGCAAATTTTAT GAGGTATCAGCAACATTGTTTCCCTGCCTTTGGTTAAAAATCACTCTAGTTATAATTTCATATATACACATATGCTTTGT ATTTTTTTTCAGAAAAAGAAATTGAGGTACTTAAGTCAAGTTATTTAATTAATGTCTGCAGGCTCTAAAGAAGAAATTGC CAGAAACATTATATGCAGGTTACTCTTCTGTGGGTATTGCAGAAACTAAAGTTGCTGCATTCTTATCAGATGAAAATATT GGCAGTGACATTGATGACATTGACGGTTATCCTGTCCAAGTTCTCCTGAAGAAAGGGATAACTAGATCTTTGAAAGCAAT TCGATTCACAATCCTTTCTTGTAAGAGTTTGTGTTATAGGTTTATTGGAGTCTTTAGATATCGATTTTTCATCATGTAAT GCAATGTGTTGAATAATGCAGATGGAAAGTTCACTTTATGGCAAGGCATGTTCTCTGGAGGAATAAACGAGGAAGCGATT GAGGAGCTCACAGGGCATTTTCTGCAGGGACATTTCTATAGAGGAAGCGATTGAAGAGCTTGCAGGGCATTATGAGCATT GTTGAGTAAATTGCCCTCTCTAAAATTTTCAATTCTTAGCAAATCTTAATATAGAGGTTACTTATATTTAAGTGTTATTT TCATTGATACTCAATTTTTTTTATCTACTAGATGCTAATTGTTTACACTTTCCATTGTTATTTGATTCAGTAATAACCTG AATTTTATCCCCCAGGGTATTGGGGTGTATGAAAAAAGGTACTGCAAAATGTGGTGTTTCTTTGTTCGTAGATGTTATGT TGGCCTAAAATTAGTTTCATGAACTGTATATTTAAACTCAGATTGGTGGTGTTTGGATCGATGTGCTGTCGAGTGGTCTT TTTCGTTATGACCTGTTGATGGAGAGAACCAATCTTGCTAAGATGGAGAATGTCTCTGAGTTTGCTTTTGATTTCAAGAG ATGCTTTATTGAATAAATGATATTTCCAAGGCTTGCGGCTTGGGATTTGGAAAAATATGTTGGGTCAGTTTCCTTTTGTG GTCTAATTAATATGATGGTGGATTTCTTATAGGATCTTTTGTTTCTAGTTTCTGGAAATTATTACCAGCATCTAGACCAT TACAGTTATAAGTTGGTGGTTGTTTGAATTAAATTTGTATTGGTTGTGTTATGAGTAGTGCTATTCCTTACAGAGAGGCA ATGCAAG
CDS sequence (LotjaGi3g1v0428400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGAAAGCTTCCAAAACTGATATGGATCGTATCTCGAATTTGCCTGAAGATATCGTCCATGATATTTTACGTCG ACTCACCATGTTAGATATTGCTCGAACCAGTTGTCTATCCAAGGCATGGAAAACCCTTGGTGTTTCTCTTCCCTACTTGA ATATCGACCCGCAAGAGTTTGGACATTACCGTGATCTTCCTCACGGGTGGTTCAAGGATTTCATGGAAAACAAAATGAGG AGCATGAGAATTTGTATGAGGATTTCATTTGAATTTGTTTTCAAATTCAAGCTATGCTTAGATCTTGCACTAGTAAAGAA ATATGTACAGGAGATTGAAAGGTACATAAAGCTAGTATTCGAAACTGGTACTATCAAAGAGTTCGAGTTCCAAATCACCA CGGACTATTATTATAGGTACGCGTTTCCTCGTCACAAGTACACATTTTCTCATCACATCTATAATGTTGAGACCTTAAAT GTGCTAAGGTTAAGTGGTATGACACTAGCACAACCCTTTGGCGATATGAAGCTCTCAAACCTTCAGATTCTAAGTTTAGA AGAGGTGAATGTACGAGGACAGACTGGCATTGGTTGGCTTTTTACTAGTTGCCCTATGATAAGGGAATTAAGGCTTGTAA ATATTAATTTGTCACTAGCAGAACCCTCTGAGGATATGAAGCTCTCAAGCCTTCAGATACTAAGGTTAGAAAAGGTGAAG GTAGACCTGCAACATGGCATTGATTGGTTCTTTACTAGTTGCCCTATGCTAAGGGAAATAAGGCTTGTAAATATTGGTAA TTTGAAGAATTTGAAGGTGTATGGTCTTAGTCACCTCAAACATCTAGAGATTGATTCTTGTCACGAGCTCAGGAGTGTTG AAATCCAAGCGCCAGACCTTCAGAATCTAGTCTTGTCTGATGAGATCATGAGTTATGGATTTATTTTGGATTTGAAAATA GACTCACAAACTTGTAAAAACTTAAGGAAACTAACGTTGTGCAATTCCACCATACAAGGTTCTACCTTCAGCCTTGTGTT TTCTGAATGCATAAACGTTGTGTCCTTGGTGCTGGACGGGTGTATGAATTTTTTTGAGATAAGAATTTCTAGTCAGAAGC TGAGGAAACTTGTTGTGACAAGATGCTTCAATCTTTGTGTGACTGATGTTAGTGCTCCAAATTTGACTTCCTTCAGTTTC TGCAATTTCCTAACCACCAAATTTTGTGATGGCTCCCGTATTTCTGTCCAACTCCTTGAGAAAATTCGCCGCCGGCAAGA ATGCATGCTTGACTTTGGACAAACGCTCTGCACCAAAAGTATATGGATATCTCTTTGGTTTCATAAATTTAAGGACATGC AAGGCCAAAAGATGGTTATGTTCCCCAAGAGCGGGAAGTATGATGTCGTCGTATTAGAAGATTGGAGCTCTATGGCAGAA CTTCAGCTTATGTCTAAGATGTGTGAAGCAGCTGCAAAAACAATTATTACAACTATGAGTTTCCTTGATCTAGCTGATTA CATGCTTGAGGGCTTTTATGCTGGTAACAAGTTGGAAAAAGTTTTAACAATCTCATCCAATGATGAAAGCAAATTTTATG AGGCTCTAAAGAAGAAATTGCCAGAAACATTATATGCAGGTTACTCTTCTGTGGGTATTGCAGAAACTAAAGTTGCTGCA TTCTTATCAGATGAAAATATTGGCAGTGACATTGATGACATTGACGGTTATCCTGTCCAAGTTCTCCTGAAGAAAGGGAT AACTAGATCTTTGAAAGCAATTCGATTCACAATCCTTTCTTATGGAAAGTTCACTTTATGGCAAGGCATGTTCTCTGGAG GAATAAACGAGGAAGCGATTGAGGAGCTCACAGGGCATTTTCTGCAGGGACATTTCTATAGAGGAAGCGATTGA
Protein sequence (LotjaGi3g1v0428400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKKASKTDMDRISNLPEDIVHDILRRLTMLDIARTSCLSKAWKTLGVSLPYLNIDPQEFGHYRDLPHGWFKDFMENKMR SMRICMRISFEFVFKFKLCLDLALVKKYVQEIERYIKLVFETGTIKEFEFQITTDYYYRYAFPRHKYTFSHHIYNVETLN VLRLSGMTLAQPFGDMKLSNLQILSLEEVNVRGQTGIGWLFTSCPMIRELRLVNINLSLAEPSEDMKLSSLQILRLEKVK VDLQHGIDWFFTSCPMLREIRLVNIGNLKNLKVYGLSHLKHLEIDSCHELRSVEIQAPDLQNLVLSDEIMSYGFILDLKI DSQTCKNLRKLTLCNSTIQGSTFSLVFSECINVVSLVLDGCMNFFEIRISSQKLRKLVVTRCFNLCVTDVSAPNLTSFSF CNFLTTKFCDGSRISVQLLEKIRRRQECMLDFGQTLCTKSIWISLWFHKFKDMQGQKMVMFPKSGKYDVVVLEDWSSMAE LQLMSKMCEAAAKTIITTMSFLDLADYMLEGFYAGNKLEKVLTISSNDESKFYEALKKKLPETLYAGYSSVGIAETKVAA FLSDENIGSDIDDIDGYPVQVLLKKGITRSLKAIRFTILSYGKFTLWQGMFSGGINEEAIEELTGHFLQGHFYRGSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 50 | 49 | 3.3E-5 | – | |
| ProSiteProfiles | 10 | 46 | 37 | 9.577 | ||
| SUPERFAMILY | 10 | 75 | 66 | 4.06E-11 | ||
| PANTHER | 11 | 450 | 440 | 5.0E-33 | – | |
| PANTHER | 11 | 450 | 440 | 5.0E-33 | – | |
| Pfam | 12 | 45 | 34 | 3.7E-6 | ||
| SMART | 16 | 56 | 41 | 0.0017 | ||
| Gene3D | 116 | 437 | 322 | 1.5E-18 | ||
| SUPERFAMILY | 151 | 404 | 254 | 2.11E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0428400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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