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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0430400 |
| Transcript ID | LotjaGi3g1v0430400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT3G49950.1 GRAS family transcription factor; Swiss-Prot: sp|Q9SN22|SCL32_ARATH Scarecrow-like protein 32; TrEMBL-Plants: tr|G7IRJ4|G7IRJ4_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi3g1v0430400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84161244..84162605) extracted from Lotus japonicus Gifu genome v1.2.
TCACACAGCTCCATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCACCACCCCTCTCTTCAA CACACCCCACAGTACTAGTACACCCCTCTCAGGAGCACTCAAAGGCTGTCTCGGAAGCCTCGACGGCGCCTGCATCGAGA AGCTCCTCCTCCACTGCGCCAGCGCCTTGGAGAGCAATGACATCACCTTGGCACAACAAGTCATGTGGGTCCTCAACAAC GTTGCTTCGCCCCACGGCGACACCAACCAGCGCCTCACCGCGTGGTTCCTCAGAGCACTAATCTCCAGAGCTTCAAGAAT TTGCCCCTCCGCAATGAGTTTCAAGGGAAGTAACAACATTCCAAGGAGGTTGATGACGGTGACCGAGCTAGCAGGGTATG TGGATCTTATTCCATGGCATAGGTTCGGGTTTTGTGCATCAAACAATGAAATTCTCAAAGCTGTTACAGGGTTTCAAAGG GTACATGTTCTTGATTTCAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAAAAGACCAGAAGG ATCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCACAAGTTCCTCCTTTAGTTAACATTTCAATACATGAGGTTG GGTTGCGTTTAGGTAATTTCGCCAAATTCAGAGATGTCCCTTTTGAATTTCATGTTATAGGAGATACAGAACAGTTGAGC AATGAATCAAACACCTTTCATTTTGAGTCCTTGTTGAGTCTATTGAATCCTAGTGTGCTAAACCTTAGGGAAGATGAAGC ATTGGTGATCAATTGCCAAAATTGGCTGCGTTACTTGTCTGATGATGATAGAAATTCAAATTCCCTTAGGGATGCTTTTC TGAGTTTAATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGATTGTGATCTCAGCGCATCGAGTCTCGCG TCGAGAATCACCGCATGTTTCAACCATCTGTGGATACCCTTTGATGCACTAGATACTTTTTTGCCTAAGGATAGTTCTCA AAGGACAGAGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGCTTTGAAGGGCATCAGAGAATAGAGAGAT TGGAGTCCGGGGTGATGATGTCACAGAGAATGAAGAATGCAGGGTACTTCAGCGTTCCATTTTGTGATGAAACTGTTAAG GAAGTTAAGGGTTTGCTTGATGAACATGCTGGTGGATGGGGGATGAAGAGGGATGAAGGTATGTTGGTTCTCACGTGGAA GGGAAACAACTGTGTGTTTGTGACAGCTTGGGTCCCTAGTGGAATGAGGGATCATGTTGGTATGGATGCAACTCTATCTT AA
CDS sequence (LotjaGi3g1v0430400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCACCACCCCTCTCTTCAACACACCCCACAG TACTAGTACACCCCTCTCAGGAGCACTCAAAGGCTGTCTCGGAAGCCTCGACGGCGCCTGCATCGAGAAGCTCCTCCTCC ACTGCGCCAGCGCCTTGGAGAGCAATGACATCACCTTGGCACAACAAGTCATGTGGGTCCTCAACAACGTTGCTTCGCCC CACGGCGACACCAACCAGCGCCTCACCGCGTGGTTCCTCAGAGCACTAATCTCCAGAGCTTCAAGAATTTGCCCCTCCGC AATGAGTTTCAAGGGAAGTAACAACATTCCAAGGAGGTTGATGACGGTGACCGAGCTAGCAGGGGAAGATGAAGCATTGG TGATCAATTGCCAAAATTGGCTGCGTTACTTGTCTGATGATGATAGAAATTCAAATTCCCTTAGGGATGCTTTTCTGAGT TTAATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGATTGTGATCTCAGCGCATCGAGTCTCGCGTCGAG AATCACCGCATGTTTCAACCATCTGTGGATACCCTTTGATGCACTAGATACTTTTTTGCCTAAGGATAGTTCTCAAAGGA CAGAGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGCTTTGAAGGGCATCAGAGAATAGAGAGATTGGAG TCCGGGGTGATGATGTCACAGAGAATGAAGAATGCAGGGTACTTCAGCGTTCCATTTTGTGATGAAACTGTTAAGGAAGT TAAGGGTTTGCTTGATGAACATGCTGGTGGATGGGGGATGAAGAGGGATGAAGGTATGTTGGTTCTCACGTGGAAGGGAA ACAACTGTGTGTTTGTGACAGCTTGGGTCCCTAGTGGAATGAGGGATCATGTTGGTATGGATGCAACTCTATCTTAA
Protein sequence (LotjaGi3g1v0430400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAELKPPTSISFQNPTTTPLFNTPHSTSTPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASP HGDTNQRLTAWFLRALISRASRICPSAMSFKGSNNIPRRLMTVTELAGEDEALVINCQNWLRYLSDDDRNSNSLRDAFLS LIKGLSPQIVLLVDEDCDLSASSLASRITACFNHLWIPFDALDTFLPKDSSQRTEFESDIGQKIENIIGFEGHQRIERLE SGVMMSQRMKNAGYFSVPFCDETVKEVKGLLDEHAGGWGMKRDEGMLVLTWKGNNCVFVTAWVPSGMRDHVGMDATLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 3 | 128 | 126 | 1.7E-139 | – | |
| PANTHER | 3 | 128 | 126 | 1.7E-139 | – | |
| MobiDBLite | 8 | 26 | 19 | - | – | |
| ProSiteProfiles | 39 | 303 | 265 | 44.869 | ||
| Pfam | 49 | 109 | 61 | 2.5E-12 | ||
| PANTHER | 129 | 305 | 177 | 1.7E-139 | – | |
| PANTHER | 129 | 305 | 177 | 1.7E-139 | – | |
| Pfam | 129 | 302 | 174 | 2.3E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0430400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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