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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0438300 |
| Transcript ID | LotjaGi3g1v0438300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HIT zinc finger protein; TAIR: AT4G28820.2 HIT-type Zinc finger family protein; Swiss-Prot: sp|Q15649|ZNHI3_HUMAN Zinc finger HIT domain-containing protein 3; TrEMBL-Plants: tr|C6T4W0|C6T4W0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0438300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85139984..85145632) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAACCTTGCATCAAAATTTAATTTAATTCATCGTGAGAGGAAATGAAGGTACATATATAACAGAAACCACCATGTGC ATCACATTAATCAGTACAGATCCAATAGCATTATTGTGAAAGACAATCTCATGATAAAACCATATATCACAATTACATTC GTGGAAATTAAAAGATGGCATATTATTTCCTATCAGTAACAACTAACAATAGTGACTAATAAACTTGTCCTAGTTTAATT TTCTTCCATGGACTTGTTGCTTGCTGATGAGATGCTACTTTTGACCTGAGAGGAGGTACCTGAGACATTGCTCCTAACCT GTGAACTCTGGTTAGAGCTAGAGTCTGTGAAGAAAACCAACTTCTCTGGGTTTTCCTCAAACACTTGAAGGGATCTTGGA AGTGGAGGCACATTCACATCCATGATCCCCTCAAGAATTTGAACCACCTGACCCATGCTTGGTCTGAAAGATTCACTATC TTGAACACACCATGATGCAACTTTGATCACTTTAGTAACCTCTTCAATGTCAGCATTTCCCTCCAACCTAGGGTCCAACA GGCTAAGAACATTTCCACCTTGGATAACCACATTTGCAGCAAAGGTAGGAAAGAACTTAACTTGGCCATCTTCAGATGGA TCAGAGTTCCTCCTCCCTGATACAAACTCAAAAAGCATCATTCCATAGCTGTACACATCGGCTTTCGCCGTGACAGCCAC CCCAGAAATCCACTCTGGAGCAAGATAGCCCCTAGTTCCTCTCATTGTTGTGAGGACCCTGCTGAACTCTCTTCCAACTA GCTTTGCAAGCCCAAAATCCGCAACTTTCGGACAAAAATCAGCATCTAAGAGAATGTTTTCAGGCTTCACATCACAATGT ATGATACAATCTCTGCACTTCTCATGGAGGTAAGTTAACCCCCTTGCAGTTCCCAGGGCAATTTGGTACCTCACTTTCCA ATCCAACACCTCAGAGTTCTGGTTCTTGAACAGATGAAAATCCAAGGAGCCATTTGGCATGTAATCATAAACCAGAAGCT TTTTGGCACCTTCTGAGCAGAAACCGCGGAGCCGAACGAGATTAACATGCTGTACTGTCCCAATTGTGCTCACTTCTGAT CGGAACTGCTTCTCTCCTTGGCTAATACTCTCCAGCCTTTTCACTGCTACGAAACTCGAATCAGCTAATGTTCCTTTGAA AACATAACCAAACCCTCCTCCTCCCAATTTCTCAGAGAAATTCTTAGTAGCATTTTGCAAATCTCTATACCCAAATGCCA CCAAAGAACCCTCCACAGGTTTTCCAGTTCCAACCATTCTCCTCCTTCTCCTAACCATGAAAAACAAAATAAGGGCCAGT AAAACCCCTATCCCCACAACCACACCCACAACAACACCAATAATCACCCCCTTGTTGCTTTTAGCATCATCAAACTCGGA CGCTGCGAGTTTGAGATACAAAGTTTCTCTACTACTATCATCTGAAGATAGCTGCTGCAGATTCAGAAGTTCTCCAATCC AAATTGAACATCCATTACTGTCATATGCATAAGCACTGCAAGAGCAGTTGTTGAAGCAGGTTGATTCACACTCCTCAATA TTCCCTGATCCTACAGATTGTGCATGTTTAGGCAATGCCATGTTGGGGATTGCAAGAAACTTATCTTTATCCTTATTCCC CTTAGAAGCATTAGAATCCTCACATTGCAACTTGGTTTTCCTCTGACACCCACCTGAATGATCCTCCAGATCCCAATCAG ACTGTGATTTTGGCCCAAAACCAGTCAAACAGCTACAATAAGGCATTGAATTTTCAGTACAGCTCCCAAATGCTCCACAA AAAGCATAAACATCACACTGTCTTCTTGGCTGTGACCAAAACAAGTTCCATTGCTTGATATTCTCCAACCAAGATAGCTG CTTAATCTGCCCTGAAATATCCATCACAAACCTTGATATAATGGAAGGATTATACAATGAGTATGTGAAGTAACTCTCAT TCTCATTCGCCACAAAAGTGAAATTATAGATATAGTTCGCCCTCATCTCAGGAACCAAACTGAAAATTCTTCCATTCCAA GGGCCACTAGTCCAATACTCTTCAGACTTGTTCCAAAGAATCAAATAAGAATTAGTCCCTTTAGGGTCCAATTCCAGAGA GAACAAACCCGTTGCAGGATCCTCTGTATTCTTCCATGATGTCAAATACTGAGGCTTCTTTGTTTTGTTGTCAAGCTTGA TTTTTCCACCTGGAAGCCATGTATCTGTTGGATGATCAAAACTCTGCCACAGAGGAGTATCTGATTCTGGTGCATCAACC CTGTCTCTTAGAACAAGGTTTCCAGAATCTAGAAGAACAGCCACAACAGAACCTGAGTTGTTGGTAATGTTTGTTGACCA AACTTGATTTGAAGAGCCATCAAAGAGAACTAGATTACCACCAGAAATTGTTAACTTGGCAGTTTTTTTGTCAGAGATGG GGTGGTCTCTGTTGGCTACCCAGACAAACGTTGGCTGAGAAACCTTTTTGTACCACATGCCTATGTAGTAGTTAGAGGAA TTGTTACCTGGTTTGAAGAAACCCAGTTCAAATGTTCCACCTTTGGAGACAAGGGTCTGGTCCCCAGAGAGAGATTGGTT TCCTGAGATGGTGGTTAGAGCTGCAAGGGAAGGAGGAGGGTTTAAGAAAGAGAAGAAAAGAATGAGAAGAGAAAGCCAGA AACATTGGTTCCTCATGTTGTTGTAGATGGCTTAGCGGAAACTGAGCCAGTTTCTTTGAGAAAGTTGAAGTTTTGTGGTG GTTTTTGGATTTTGATTTGATGGCAGTGGAAGAGACAGAAATGGTGAATGGTAGAAGAAGAAGTCTAAAGTTGTGTTTGG ACGAGGTAATGGGATGGTGGCAGCTGTTTTTACTCATCAAGTCCATGAAGACTTTTCTTGCTGATGACTTTTCTGACTTT CTGAGTGTGTAATAATATCTAGCTCTGTATTAGATGTTACTGTCATGAGGTGGAAACTTCTTGCCACTTGAGAAATCTTG AAACATAGAGACAACCAAGTTTTTTAATTGCATTTCATTTCCACTTTCATCTTATTTTATGATTTAATATAGATTAGATC ATAAATTGATAAAAATGAATAATTAACTCAAGTTGATTGAAATATGTGTTTTATTGTTGGACATAAATATTGAAGTAGAT GCATAGCTGTGATCAAATCAATAATAACTTATAAGGACTAAGACAAAGCTAATTAAGGTCCATCATCAATGAATGGCTCT TATTCTTCCATGGTTACTGGCAGCTTTGCCTAATTGCCATGGAATGTGGATATATTCCTGCCCAGGTCAAGTTGTTTCAA TTTTCAAAGTCATCTGTGTGCAGAGCTGACCAGACCGAAATTCTTCTATATATAGAATGAATTGGAAATTGCAATGATTG GTTACGTTAATTTCTCAGCATTTGAGGAATGACCCGGTCAAATATTTTCAATATTATTTATTAATACTTGTGGTAAAACT TTTTTTTTTAAATCACCGGCAATGAGTATGACTTGGCCCAAGGTGTCTAGCCCAAAGGACGTGAGTTAGTCACATTCACT CCCCGCCACATTCACTCTTTGCTGTTCCCCAATGGGTCCTCAACAATGTCAAGTTTGCAACCAAGTTCAGTCCAAATACA AGTGCCCTTCATGTTATTTACCTTAGTAAGTAAAACCCAAATGTGATTCTGTTGTTGTTTGATTTCTGAACTCATTTGAT TGATGTTGTGTCTTCTGCATGTAGCTGTTCCCTGGTTTGCTTCAAGAAACACAAAGGTAGTATGATGCCCTTTAGTGACA AGCTATTTGATTGCTTGATAAGTGTTTGATATAATGCCTGTCAAAGGTGGATGTGCTGGGTTTCTCAATAAATGCTTTCA TGACTTTTACTTGGTTATACAAATCAAATTTGGGAGATATTTTATGTTAGCTTGTTCATTCATTCTGCAATTCAAATTTG CTTGGCCTATTGAATTGATCATACTTACTTGTGTTGCAGAATTTCCATGTGTCAAGCCACCCTCTTCAGAAGCCAAAACA AGTAAGAGTTTAATTCAACTCCATAATTACGTAGTCTGCATGATGATGAATTTTCATTGACATCCCTCCCATGGAGGATA TAAGAATTTGTGGTTTTATATTGATGAGCACATGTAATTTGATCCCACCATTTAATATCAGGATTCTCATGCCTCCTATC TGCCTTATTGATTTTTCACATGCACAAGTTAAGGGCATTTTCTTGCTATGAAGGTATGCGTGGGGGTTAGGGAACTAATT ATAGGTCTATCTAGGGAAGCCTAATCTTCTGTTTTCAAGAGGCTGATTCCACCACAAGTCCACAACCTTAACTTTCATCA GCAAAAACATTGCTACAAAATTAAGTTTTTTTACATTTGGCTGAAACTTGAGTGGCATGTATGCTCCTTCTAGATATCTG TTGTTTTGCAGTTTGCACGTTGTCCTTGTAGTTGTAGTTTTTCTGCCAATTTTCTTAAAAAAAATAAAACTTGTGTGATG TGCTCTTGGAAGCATGCTGTACTTTGCTGTCAAACTGAAGCAATCAACTATGTTATAATTGTGATCTGAACTTTAGGTTT TTGGCAAATAGTTTATTGCTCTTAAGCCCTTTTTGTGATCTCATCTGATATTATGTTTCACTATTGTTCATCAGCTGCTG CTTTGGAATCACCTGCAAAAGAGCCAATAGTCATTGATGAACCAATTGAAGTGTTGCAAAAATACCAACTGGAGGCTATA GGTATTTTTGTTTGTGTATAAGAATTTAATAATGCCCGAGATGCAGCATTGCAGTACAGAAATTTCAGTAGTAACACCAA GGTTGGTTAATGTGTGTTTTTTAACTCTTGTATTTCTGGTGCAGCCTCTTCCAGTGAGATTCGCGATGCTTTGAATGATA AAGCGCTTCAAGAACTAATTTTCCGCATTGATTGTTCCTCAAATGCAGAGAATGTATGTCAAATGAAGCTCTCTTATTTC TCACAGTCACCTGTGAATAAAACTCACTATTTTTGCCTAGCAATCACAGTCTGATATTTATAATTTACGAATTACTAGTT TTAATACTCAATCCACTAAAACTTGGAGAGATTTTTCCTTTAAAATGGTGTTGCTATGATTAGGAACTTGATAAAGCTAT GGAGGAGGAGGCATTTCGCTTGTTCACAGACAAGGTAATGCTATTTGCTGATTCTGATGTGCTTTCTCCCACATTGCATG TGGAACCTTTATAGGGTTGTCACATTGGTTAAGCTCAAGTAGATAAGTACCTTAAACCTTGCTCTTACTTTGTTCTTTTT TTTCCATTGGATTCCAGATTTTATCAACCACCAACCCCTAACTGCAAGCACACGCCGCTGAAAGCAAAATTTGTGAAAGA AAGTTAAATATGAAAGGAACAGCAGATAGAACCCCTAAAGTCTGCAGGTTTTGTTTATTAGATTTAGATATATATATATA TATATATATATATATATATATATATATTTCAGCTGTACAGCTCAACCCCATGATTCAGCTTTTGATGTGTAAGAAATTTT GTATCTTCATTGAGCTAGTGTAGTGTATGGGCCAAAGATTGATTTTGAT
CDS sequence (LotjaGi3g1v0438300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCCTCAACAATGTCAAGTTTGCAACCAAGTTCAGTCCAAATACAAGTGCCCTTCATGTTATTTACCTTACTGTTC CCTGGTTTGCTTCAAGAAACACAAAGAATTTCCATGTGTCAAGCCACCCTCTTCAGAAGCCAAAACAACTGCTGCTTTGG AATCACCTGCAAAAGAGCCAATAGTCATTGATGAACCAATTGAAGTGTTGCAAAAATACCAACTGGAGGCTATAGCCTCT TCCAGTGAGATTCGCGATGCTTTGAATGATAAAGCGCTTCAAGAACTAATTTTCCGCATTGATTGTTCCTCAAATGCAGA GAATGAACTTGATAAAGCTATGGAGGAGGAGGCATTTCGCTTGTTCACAGACAAGATTTTATCAACCACCAACCCCTAA
Protein sequence (LotjaGi3g1v0438300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGPQQCQVCNQVQSKYKCPSCYLPYCSLVCFKKHKEFPCVKPPSSEAKTTAALESPAKEPIVIDEPIEVLQKYQLEAIAS SSEIRDALNDKALQELIFRIDCSSNAENELDKAMEEEAFRLFTDKILSTTNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 42 | 41 | 1.4E-8 | – | |
| PANTHER | 3 | 131 | 129 | 1.6E-33 | – | |
| PANTHER | 3 | 131 | 129 | 1.6E-33 | ||
| SUPERFAMILY | 4 | 37 | 34 | 8.89E-10 | – | |
| Pfam | 4 | 32 | 29 | 1.8E-10 | ||
| ProSiteProfiles | 6 | 39 | 34 | 11.115 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0438300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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