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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0441500 |
| Transcript ID | LotjaGi3g1v0441500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Secretory carrier-associated membrane protein; TAIR: AT2G20840.1 Secretory carrier membrane protein (SCAMP) family protein; Swiss-Prot: sp|Q9SKT3|SCAM1_ARATH Secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|I1KF52|I1KF52_SOYBN Secretory carrier-associated membrane protein; Found in the gene: LotjaGi3g1v0441500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85422347..85426615) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGAAAGATTATGCATGAAAATTTTCCTTCCTCCCCATTGTTCCTCCTCTTCAGTTTTCCTTCCCACTCAACAAAC AAACAAACAAACCAGCGTTAACGTAACGAGAAGCCGTTCATTTCCATTCCCAGGCCTACAACAAACATCTTCCTCCCCTG TTTTTGAATGCCATTCTCATTTAATTTCTCTTCTCATCAATTCCCGTATCCATTTTTTTTTCTCTTCTTTTCTTTTTTCA CCTTGATTCCAATCTAGATCTCCGTGTTTGGCCTCAAATTCCATGAGTAACTACGACACCAACTCCAACCCCTTCGCCGA AGAAGATGTCAATCCCTTCGCCGCCGTGAGTTTCTATCTTAACTCTCTTCATTTTCCTTACCGCATTGCATGAATAGTTT CATCTCGTGTCACATTCACATTGTAATTGCATGTTGTTGATGAATAAAACTGCATGCATTTGATTTATGGCTTCAATGCT ATGTTGAATGAAATCATTGATGAATTGAATGAAATTCGTAATGTATATAGCTAAATGGACCTATCAATTCATGCTTCTAT AGCTGCGCGATGATATGGTAAAACTTTTAGATATTGTCAAATGTTGTGGAACTTGTTCATGTATCAGATTGTAGAACTTT GAAAGAAAATGTTTCTTAAGAATAAAGCCCCTCAATGATTCCTTCATTCATTCATTCTTTGTAATGATATTTAATTATTT ATTAGCTTTAAATTATCTATCTTTCTTAACACACACACATATATTGAGAATGTTTATCATTGACTTTGCTGGTTCCTTTA GTTTTACTTAGTAATATTTTAAAGATCTATAAATTTATGCATTTTCATTGAGAATATTAGGATGGAGCTGGTAAAGGAAA ATCAATTATAGTGGAGGTGCATTCTACACTACTAGATGTCGTCCCGTTCATTCCATACTATCATTATATTAAGGGTTTTG ATTCATTCACACTCATTTTCCCATTTTCTCTTTCTTATTTTCCTATTATATCAATCATCATATATCTCACTTCTCTTTCT TCTAGGTGTATTTGCTACCTGGGGTGTTCATTATACTTTTTCATTTTATTAACTTGAAACCCTTATTTATTTGACTATAG CAGCATGCTGTTGAGTTAGTTTGGTAAACTAAGGTAGTTAGATTCAGTTAATTGAACTGCATTAAACTGTGTATATACCT ATTTATATAAGTTAATAAAAAAGATCAATCAATAGAGAATTTTTTTTCTCATATCTTCTCTCTATTTGATTGATCTCCTA ACATATTTGGACTAAGGATGGACATTGAATAGACATGTTTTAACTTTTGATAAGTATCCTCTGTTTTTAGATTGAGCAAG GGCATTGCATCGATATAGTTCCTTGATTGTGGTTAATATATAGAACTTGAAATGTAAAGAAAAGGTTATATGCCTTTTTA TCATTCATTAAATTTCTACATTTTTTTTATAAACCTGCAGAACGCAGGAAGCGTTCCCCCTGCAACCTCAAAGCTTAAAC CCCTTCCTCCTGAGCCTTATGATCGTGGAGCAACTATTGACATTCCTCTTGATACCTCAAAGGTAGATAAATCAGATTAT GAAAATGTCAAAACTATCATGCCATAGTGCTGCTGACCAAATATAAAATCAATTATTTCATTTTAAACTGTAGGACATCA AGGCAAAGGAGAAAGAACTTCAAGCCAGAGAAGCTGAGTTGAAAAGAAGGGAACAGGTTATTCAGACTGATCTCTTTTTT CGCTGTTCTATGTGAGCTGAATATCATATCTTTTGTACTAATAAAGTAATTCATGATCTCTTGATATTTTGTAGGAGCTA AAGCGAAAGGAAGATGCTATAGCACGAGGTATTTTGAGCTCATCTATACCTCCTGAAGCCAATATGATTTACAGGAACAT TGCTTTCAGTTTGGTGGTTTACATTGTGTTTTTTTGTTTGCAGCTGGAATAGTTATAGAGGAAAAGAATTGGCCTCCTTT TTTCCCCATCATTCATCATGATATTGCAAAAGAAATACCATTGCATCTTCAAAGGATCCAGTATGTTGCGTTTACAACAT GGTTAGGTATGTTGAAGTCCATTTTTTTTCAAAAGATTTGCAAGTCTTGATCTTGATAAATTTTATGCTAAAAGGAGTTT CGTTTTGGTAGGCAGTTTTCATTAAAAGAATCATAGTGTGCACATTTTTTTCTTATCGTTTATTGTTTTCTTAGACTAAT ATTGAAGTTTGCTTCAATAAATTTCATAACAAAGTTGAAGACTTCTAAAACTCATGTACCATGTCATTGTAACTTCTGAG TTCTGACAAATGTACATGACACGGTAATGTCTTCTTTTTCTTTTTCAGCTGGGAGATGTATCTTCCATTCTTTTCCTTCG CTCTATAAATAGAACTACAAAGCCTTCTCCCCCTTTTGCAGAAATTTCCAGTATAAATATCTTTTTATAAGAATTTATCT TGCTTTAATTATTGTATCTTAGTTTGGAACTTTGCGACAAACTGCAGGCTTTATCATATGTCTTGTATGGAATATTGTGG CTGTTACTATGGCTTGGATCAAAGGAGAAGGTTTGTTTTACAACTTCATATTGGACCATCAATCATACTAGGCCATGCTG TTATTGACATGAACTTGACTTACATTGTAGGTACGTCAATATGGTTTCTTGCTATCATATACTTCATTGCTGGTGCCCCT GGATCCTATGTGATATGGTATCGCCCTCTTTATCGTGCTATGAGGTAGTCATCAATCTGATTGAATTCAAAATTTTCTAG TCTGGTGTGTATATGCAATAGGTTTTCAGCCTTTCTTTTAAACTCTGAAAAATTATTAATGTCATCTAGTTGGCCTTATC ACCAATATGAAGCATCAAGTATGTTGTTGCAACAGTAGTATACTAGTATGCCATTTAGGGAACTTTGTGGAGACAGATGG AGCATGTTGGCCTTTGACCAAATTGCATTAAAAAAGCACTGAGATGTAAATGTCTTTTAAGGAATGCTATGAAAATGAAT AATTTTATCTACTGAAAATCGAGATCCTTCGTTCTTTTTAACCTGATTTTATCATTCCGATTTGGTATGTTTTTGGTTTA CAATTATGTGCCATCACGTGTTACAGGACAGACAGTGCTCTAAAGTTTGGCTGGTTCTTCCTGTGTTACATTGTAAGTTT TCTATATTTTCTAATAATTCATAATGTGCTGATTTTGCAAAGTGCTCATGTCCTTTTTCCAATTTATGTCCAAGCAGTGG CATGTTGCGTTCTGCATTTTTGCTGCAGTTGCTCCTCCAATTATCTTCAAAGGAAAATCTCTAACGTGAGATCCTGTCCA CTCTTGCATTCCTTTTATATAATTATATAGGAAAACACTTAGATCAGTTATTTAATTGCAATAATTTTTCGTTTTCATCA CGATTGCACTTTTATTCGAACTAATGGTTGTGTTGTTTTTTATGTTATGCTGTGGACAGAGGTATACTACCTGCGCTTGA GGTGTTGACCTACAATGTATTGGTTGGGGTATGTTCCAATTGTGTTGTTATTTGTTTTCCTTCTAATTTGCTACTAGTTT CTTGATAAAGAGTCATAAACAATAGTTGGACCTTATTTTGCTCCAAAAGGAAGGGTTAATTTTACTTCAAGTCATGATTA AAATGTATGAATGATGCTAATATTTGGGCTGAATTGCAGGTATTCTACTTAATTGGGTTTGGTTTTTTCACGATAGAATC ACTCTTAAGCATCTGGGTTATGCAGGTTAACTATAATAAACAATTGCCTTGTTATTCTTTTGACTTTGCATCTACTTTCT TGTTTGATAATTGATTTGCATTTGCAGCAAGTATACATGTACTTTCGCGGCAGTGGGAAGGCTGCAGAGATGAAGCGCGC GGCTGCGAGAGGGACCATGATGGCAGCTATGTGATAGGCAGGGAGGGCGACTAAATGAGGAAATTGGCACCAGCAAATGT GTTCCTGATGATTTTCCAGTTCCTTGCACCCTTTCTGTTTGGATGTTTATTCCCTAGGTTTTGGCCTAGGAATTGAGTCA CACTAAAAGGTTAACATAGAAATTGTAGTTGTGCATAGATAGGCTAACATTGTCTCAGACTGAGATGCTCCCTTGATGTA TGACTTGTTACAGAGAATATTGTCTATATTTGATATTAACAATATGGTTTGTAAAATATTTTTCGGGCTAAAAAAAGAAT CAGTTATAATTTTTGAAGAATAAAAATAT
CDS sequence (LotjaGi3g1v0441500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAACTACGACACCAACTCCAACCCCTTCGCCGAAGAAGATGTCAATCCCTTCGCCGCCAACGCAGGAAGCGTTCC CCCTGCAACCTCAAAGCTTAAACCCCTTCCTCCTGAGCCTTATGATCGTGGAGCAACTATTGACATTCCTCTTGATACCT CAAAGGACATCAAGGCAAAGGAGAAAGAACTTCAAGCCAGAGAAGCTGAGTTGAAAAGAAGGGAACAGGAGCTAAAGCGA AAGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAAAAGAATTGGCCTCCTTTTTTCCCCATCATTCATCATGA TATTGCAAAAGAAATACCATTGCATCTTCAAAGGATCCAGTATGTTGCGTTTACAACATGGTTAGGCTTTATCATATGTC TTGTATGGAATATTGTGGCTGTTACTATGGCTTGGATCAAAGGAGAAGGTACGTCAATATGGTTTCTTGCTATCATATAC TTCATTGCTGGTGCCCCTGGATCCTATGTGATATGGTATCGCCCTCTTTATCGTGCTATGAGGACAGACAGTGCTCTAAA GTTTGGCTGGTTCTTCCTGTGTTACATTTGGCATGTTGCGTTCTGCATTTTTGCTGCAGTTGCTCCTCCAATTATCTTCA AAGGAAAATCTCTAACAGGTATACTACCTGCGCTTGAGGTGTTGACCTACAATGTATTGGTTGGGGTATTCTACTTAATT GGGTTTGGTTTTTTCACGATAGAATCACTCTTAAGCATCTGGGTTATGCAGCAAGTATACATGTACTTTCGCGGCAGTGG GAAGGCTGCAGAGATGAAGCGCGCGGCTGCGAGAGGGACCATGATGGCAGCTATGTGA
Protein sequence (LotjaGi3g1v0441500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNYDTNSNPFAEEDVNPFAANAGSVPPATSKLKPLPPEPYDRGATIDIPLDTSKDIKAKEKELQAREAELKRREQELKR KEDAIARAGIVIEEKNWPPFFPIIHHDIAKEIPLHLQRIQYVAFTTWLGFIICLVWNIVAVTMAWIKGEGTSIWFLAIIY FIAGAPGSYVIWYRPLYRAMRTDSALKFGWFFLCYIWHVAFCIFAAVAPPIIFKGKSLTGILPALEVLTYNVLVGVFYLI GFGFFTIESLLSIWVMQQVYMYFRGSGKAAEMKRAAARGTMMAAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 120 | 120 | - | – | |
| PANTHER | 1 | 285 | 285 | 1.7E-164 | ||
| PANTHER | 1 | 285 | 285 | 1.7E-164 | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| Coils | 54 | 84 | 31 | - | – | |
| Pfam | 94 | 265 | 172 | 5.6E-53 | ||
| Phobius | 121 | 146 | 26 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 147 | 151 | 5 | - | – | |
| TMHMM | 151 | 173 | 23 | - | – | |
| Phobius | 152 | 173 | 22 | - | – | |
| Phobius | 174 | 184 | 11 | - | – | |
| Phobius | 185 | 212 | 28 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 213 | 231 | 19 | - | – | |
| Phobius | 232 | 256 | 25 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 257 | 285 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0441500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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