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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0443100 |
| Transcript ID | LotjaGi3g1v0443100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT2G20780.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4; TrEMBL-Plants: tr|C6TMP6|C6TMP6_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0443100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85639249..85641352) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTTCCAAGAACATGGCAATGGGAAAGTGGGATTTGCTGAGATCCATTTGGGAGCAAAGAATAAGTACAAGAGGAT GAACTCAGAGCTTCCAGAGGATCATGATGATGATGTTTTGCACCAAGAAGCAAGGAGGAATAGGACCAGGAAATATGTTA TTGCTTGTGCTATCTTTGCTTCACTCAACAATGTCCTTCTCGGCTATGGTATACTTTATTATTCTAGCATCTGATTTTTT GTGATTCTTCATTGTAGTGTCTAAAACTCATGAAAGCAGAACTTCCAAAATCTGTATTCAGGATTGCCAACCTGAAAAAA GTTTTCAACTTTGGACCTTAAAGTTCTAATTCTGGTGCTATTTTAGAATGATTACAAACATTAACATGATTTAGAGCTAG CTTACAAGCACTGATGGGGCGTTGAAATAATTTTGGAATATATCATAGATTCTAGCATAAATTGAAATTAACTTCTACAG CTCATAAATACATATACCATGATTGGATCAGCTTTTTTTTTCTCAAAATTAATGTTGGCACCCAGAAGCTACTAACATAA GTTTCCCAGAAGAATTGATTTTGACATTAGAATCAATTGTAACAGGATTTTCTAACATGCTATTACTAACATAAAAGTAC TTTCACAGTAATTAAGAACAATATACCTATTTAAATTGAAAAGCAGTCACAAGTTAGAAACTAATTTAAACTGGACCTTA CTTTTGTTGTCAACTTGCAGATGTAGGTGTAATGAGTGGAGCAGTTATATTTATTAAAGAAGATCTGAAGATATCTGAGG TGAAGGAAGAATTTCTGGTTGGTATTCTTAGCATTGTTTCTCTTCTAGGAAGTCTAGGTGGTGGAAGAACTTCAGATATT ATTGGTAGGAAATGGACTATGGCATTAGCTGCAGTGGTGTTTCAAATAGGTGCACTCATCATGACTCTTGCTCCTTCATT CACAGTACTATTGATTGGAAGGCTTTTAGCAGGTGTTGGCATAGGATTTGGAGTCATGATCTCCCCTATATATATTGCAG AGATATCACCAAACACCACCAGAGGATCTCTCACTGCCTTCCCAGAGATTTTCATAAATATAGGAATTTTGCTTGGTTAT GTGTCAAATTATGCCTTTTCAGGCTTTTCACCACACATCAATTGGAGGATAATGCTTGGTGTGGGAATTTTGCCCTCTGT GTTCATCGGCTTTGCGCTTTTCATTATCCCCGAGTCACCGAGGTGGCTTGTAATGCAGAACCGAATCGAAGAAGCCAGAT CAGTGCTTTTGAAAACAAATGAAAATGAGAAAGAAGTGGAGGAGAGGCTAGCAGAAATACAAAAGGCTGCTGAGAAGTTT GAGGACAAACCAGTGTGGCGCGAACTTCTATTTCCTTCTCCTTCGCTACGCCGGATGCTGATAACTGGAATTGGGATTCA GTGTTTTCAACAGATTTCTGGAATTGATGCAACTGTGTATTATAGTCCTGAAATTTTCAAAGCAGCAGGAATTGAGGATA ATTCAAGGCTTCTAGCTGCTACTGTTGCTGTAGGTGTAACAAAAACCCTTTTTATAGTGATAGCAATCATTCTTATTGAC AAACTAGGTAGGAAGCCCTTACTCCTTATAAGCACAATTGGGATGACAGCTTGTTTGCTAAGCATTGGTGCTACTCTTTC TTTATTTGGACAAGGATCTTTTGTGATTGCATTGTCAATTCTGTTTGTTTGTGGCAATGTTGCATTCTTTTCTGTTGGAC TAGGACCTGTGTGTTGGGTTCTGACAAGTGAAATCTTCCCTTTAAGGCTGCGCGCTCAAGCGTCTGCGCTTGGAGCTGTC GGCAATAGGGTTTGCAGTGGCCTTGTGGCCATGTCTTTTCTTTCGGTTTCACGAGCAATTACAGTTGGTGGAGCATTCTT CATGTTTGGTGCTGTTTCTTCTCTTGCCATTGTTTTTGTCTACACTCTAGTTCCTGAAACCAAAGGGAAGTCATTGGAGC AAATAGAGCTCATGTTTCGGGATGAACACCAGAGTCAAGGAAGTGAATTGGAGCTAGGAGATGCTGAACAACTTGTGCAG AATAAAACTGTTTTGACAAATTAA
CDS sequence (LotjaGi3g1v0443100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTCCAAGAACATGGCAATGGGAAAGTGGGATTTGCTGAGATCCATTTGGGAGCAAAGAATAAGTACAAGAGGAT GAACTCAGAGCTTCCAGAGGATCATGATGATGATGTTTTGCACCAAGAAGCAAGGAGGAATAGGACCAGGAAATATGTTA TTGCTTGTGCTATCTTTGCTTCACTCAACAATGTCCTTCTCGGCTATGATGTAGGTGTAATGAGTGGAGCAGTTATATTT ATTAAAGAAGATCTGAAGATATCTGAGGTGAAGGAAGAATTTCTGGTTGGTATTCTTAGCATTGTTTCTCTTCTAGGAAG TCTAGGTGGTGGAAGAACTTCAGATATTATTGGTAGGAAATGGACTATGGCATTAGCTGCAGTGGTGTTTCAAATAGGTG CACTCATCATGACTCTTGCTCCTTCATTCACAGTACTATTGATTGGAAGGCTTTTAGCAGGTGTTGGCATAGGATTTGGA GTCATGATCTCCCCTATATATATTGCAGAGATATCACCAAACACCACCAGAGGATCTCTCACTGCCTTCCCAGAGATTTT CATAAATATAGGAATTTTGCTTGGTTATGTGTCAAATTATGCCTTTTCAGGCTTTTCACCACACATCAATTGGAGGATAA TGCTTGGTGTGGGAATTTTGCCCTCTGTGTTCATCGGCTTTGCGCTTTTCATTATCCCCGAGTCACCGAGGTGGCTTGTA ATGCAGAACCGAATCGAAGAAGCCAGATCAGTGCTTTTGAAAACAAATGAAAATGAGAAAGAAGTGGAGGAGAGGCTAGC AGAAATACAAAAGGCTGCTGAGAAGTTTGAGGACAAACCAGTGTGGCGCGAACTTCTATTTCCTTCTCCTTCGCTACGCC GGATGCTGATAACTGGAATTGGGATTCAGTGTTTTCAACAGATTTCTGGAATTGATGCAACTGTGTATTATAGTCCTGAA ATTTTCAAAGCAGCAGGAATTGAGGATAATTCAAGGCTTCTAGCTGCTACTGTTGCTGTAGGTGTAACAAAAACCCTTTT TATAGTGATAGCAATCATTCTTATTGACAAACTAGGTAGGAAGCCCTTACTCCTTATAAGCACAATTGGGATGACAGCTT GTTTGCTAAGCATTGGTGCTACTCTTTCTTTATTTGGACAAGGATCTTTTGTGATTGCATTGTCAATTCTGTTTGTTTGT GGCAATGTTGCATTCTTTTCTGTTGGACTAGGACCTGTGTGTTGGGTTCTGACAAGTGAAATCTTCCCTTTAAGGCTGCG CGCTCAAGCGTCTGCGCTTGGAGCTGTCGGCAATAGGGTTTGCAGTGGCCTTGTGGCCATGTCTTTTCTTTCGGTTTCAC GAGCAATTACAGTTGGTGGAGCATTCTTCATGTTTGGTGCTGTTTCTTCTCTTGCCATTGTTTTTGTCTACACTCTAGTT CCTGAAACCAAAGGGAAGTCATTGGAGCAAATAGAGCTCATGTTTCGGGATGAACACCAGAGTCAAGGAAGTGAATTGGA GCTAGGAGATGCTGAACAACTTGTGCAGAATAAAACTGTTTTGACAAATTAA
Protein sequence (LotjaGi3g1v0443100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFQEHGNGKVGFAEIHLGAKNKYKRMNSELPEDHDDDVLHQEARRNRTRKYVIACAIFASLNNVLLGYDVGVMSGAVIF IKEDLKISEVKEEFLVGILSIVSLLGSLGGGRTSDIIGRKWTMALAAVVFQIGALIMTLAPSFTVLLIGRLLAGVGIGFG VMISPIYIAEISPNTTRGSLTAFPEIFINIGILLGYVSNYAFSGFSPHINWRIMLGVGILPSVFIGFALFIIPESPRWLV MQNRIEEARSVLLKTNENEKEVEERLAEIQKAAEKFEDKPVWRELLFPSPSLRRMLITGIGIQCFQQISGIDATVYYSPE IFKAAGIEDNSRLLAATVAVGVTKTLFIVIAIILIDKLGRKPLLLISTIGMTACLLSIGATLSLFGQGSFVIALSILFVC GNVAFFSVGLGPVCWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGAFFMFGAVSSLAIVFVYTLV PETKGKSLEQIELMFRDEHQSQGSELELGDAEQLVQNKTVLTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | - | – | |
| SUPERFAMILY | 27 | 492 | 466 | 1.18E-71 | ||
| PANTHER | 30 | 516 | 487 | 1.6E-265 | – | |
| PANTHER | 30 | 516 | 487 | 1.6E-265 | – | |
| TIGRFAM | 36 | 491 | 456 | 1.7E-106 | ||
| Gene3D | 45 | 499 | 455 | 1.9E-129 | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 52 | 81 | 30 | - | – | |
| Pfam | 56 | 495 | 440 | 6.7E-111 | ||
| ProSiteProfiles | 56 | 484 | 429 | 51.681 | ||
| CDD | 59 | 491 | 433 | 0.0 | – | |
| PRINTS | 64 | 74 | 11 | 1.1E-23 | ||
| Phobius | 82 | 92 | 11 | - | – | |
| Phobius | 93 | 111 | 19 | - | – | |
| TMHMM | 94 | 111 | 18 | - | – | |
| ProSitePatterns | 110 | 127 | 18 | - | ||
| Phobius | 112 | 122 | 11 | - | – | |
| Phobius | 123 | 141 | 19 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 142 | 146 | 5 | - | – | |
| PRINTS | 147 | 166 | 20 | 1.1E-23 | ||
| Phobius | 147 | 168 | 22 | - | – | |
| TMHMM | 150 | 172 | 23 | - | – | |
| ProSitePatterns | 152 | 177 | 26 | - | ||
| Phobius | 169 | 179 | 11 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 180 | 197 | 18 | - | – | |
| Phobius | 198 | 208 | 11 | - | – | |
| Phobius | 209 | 232 | 24 | - | – | |
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 233 | 294 | 62 | - | – | |
| Coils | 245 | 279 | 35 | - | – | |
| Phobius | 295 | 318 | 24 | - | – | |
| PRINTS | 306 | 316 | 11 | 1.1E-23 | ||
| Phobius | 319 | 332 | 14 | - | – | |
| Phobius | 333 | 355 | 23 | - | – | |
| TMHMM | 333 | 355 | 23 | - | – | |
| ProSitePatterns | 351 | 368 | 18 | - | ||
| Phobius | 356 | 361 | 6 | - | – | |
| Phobius | 362 | 385 | 24 | - | – | |
| TMHMM | 365 | 387 | 23 | - | – | |
| Phobius | 386 | 390 | 5 | - | – | |
| Phobius | 391 | 418 | 28 | - | – | |
| TMHMM | 394 | 416 | 23 | - | – | |
| PRINTS | 396 | 417 | 22 | 1.1E-23 | ||
| PRINTS | 419 | 431 | 13 | 1.1E-23 | ||
| Phobius | 419 | 429 | 11 | - | – | |
| Phobius | 430 | 450 | 21 | - | – | |
| Phobius | 451 | 455 | 5 | - | – | |
| TMHMM | 455 | 477 | 23 | - | – | |
| Phobius | 456 | 480 | 25 | - | – | |
| Phobius | 481 | 523 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0443100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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