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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0443100 |
| Transcript ID | LotjaGi3g1v0443100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT2G20780.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4; TrEMBL-Plants: tr|C6TMP6|C6TMP6_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0443100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85640000..85640962) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTGGAGCAGTTATATTTATTAAAGAAGATCTGAAGATATCTGAGGTGAAGGAAGAATTTCTGGTTGGTATTCTTAG CATTGTTTCTCTTCTAGGAAGTCTAGGTGGTGGAAGAACTTCAGATATTATTGGTAGGAAATGGACTATGGCATTAGCTG CAGTGGTGTTTCAAATAGGTGCACTCATCATGACTCTTGCTCCTTCATTCACAGTACTATTGATTGGAAGGCTTTTAGCA GGTGTTGGCATAGGATTTGGAGTCATGATCTCCCCTATATATATTGCAGAGATATCACCAAACACCACCAGAGGATCTCT CACTGCCTTCCCAGAGATTTTCATAAATATAGGAATTTTGCTTGGTTATGTGTCAAATTATGCCTTTTCAGGCTTTTCAC CACACATCAATTGGAGGATAATGCTTGGTGTGGGAATTTTGCCCTCTGTGTTCATCGGCTTTGCGCTTTTCATTATCCCC GAGTCACCGAGGTGGCTTGTAATGCAGAACCGAATCGAAGAAGCCAGATCAGTGCTTTTGAAAACAAATGAAAATGAGAA AGAAGTGGAGGAGAGGCTAGCAGAAATACAAAAGGCTGCTGAGAAGTTTGAGGACAAACCAGTGTGGCGCGAACTTCTAT TTCCTTCTCCTTCGCTACGCCGGATGCTGATAACTGGAATTGGGATTCAGTGTTTTCAACAGATTTCTGGAATTGATGCA ACTGTGTATTATAGTCCTGAAATTTTCAAAGCAGCAGGAATTGAGGATAATTCAAGGCTTCTAGCTGCTACTGTTGCTGT AGGTGTAACAAAAACCCTTTTTATAGTGATAGCAATCATTCTTATTGACAAACTAGGTAGGAAGCCCTTACTCCTTATAA GCACAATTGGGATGACAGCTTGTTTGCTAAGCATTGGTGCTACTCTTTCTTTATTTGGACAAGGATCTTTTGTGATTGCA TTG
CDS sequence (LotjaGi3g1v0443100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGAGCAGTTATATTTATTAAAGAAGATCTGAAGATATCTGAGGTGAAGGAAGAATTTCTGGTTGGTATTCTTAG CATTGTTTCTCTTCTAGGAAGTCTAGGTGGTGGAAGAACTTCAGATATTATTGGTAGGAAATGGACTATGGCATTAGCTG CAGTGGTGTTTCAAATAGGTGCACTCATCATGACTCTTGCTCCTTCATTCACAGTACTATTGATTGGAAGGCTTTTAGCA GGTGTTGGCATAGGATTTGGAGTCATGATCTCCCCTATATATATTGCAGAGATATCACCAAACACCACCAGAGGATCTCT CACTGCCTTCCCAGAGATTTTCATAAATATAGGAATTTTGCTTGGTTATGTGTCAAATTATGCCTTTTCAGGCTTTTCAC CACACATCAATTGGAGGATAATGCTTGGTGTGGGAATTTTGCCCTCTGTGTTCATCGGCTTTGCGCTTTTCATTATCCCC GAGTCACCGAGGTGGCTTGTAATGCAGAACCGAATCGAAGAAGCCAGATCAGTGCTTTTGAAAACAAATGAAAATGAGAA AGAAGTGGAGGAGAGGCTAGCAGAAATACAAAAGGCTGCTGAGAAGTTTGAGGACAAACCAGTGTGA
Protein sequence (LotjaGi3g1v0443100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAVIFIKEDLKISEVKEEFLVGILSIVSLLGSLGGGRTSDIIGRKWTMALAAVVFQIGALIMTLAPSFTVLLIGRLLA GVGIGFGVMISPIYIAEISPNTTRGSLTAFPEIFINIGILLGYVSNYAFSGFSPHINWRIMLGVGILPSVFIGFALFIIP ESPRWLVMQNRIEEARSVLLKTNENEKEVEERLAEIQKAAEKFEDKPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 208 | 208 | 33.985 | ||
| Gene3D | 1 | 207 | 207 | 1.9E-57 | – | |
| CDD | 1 | 165 | 165 | 5.68793E-87 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 203 | 203 | 6.3E-114 | – | |
| PANTHER | 1 | 203 | 203 | 6.3E-114 | – | |
| SUPERFAMILY | 2 | 190 | 189 | 4.58E-38 | ||
| Pfam | 16 | 201 | 186 | 9.7E-52 | ||
| Phobius | 21 | 38 | 18 | - | – | |
| TMHMM | 21 | 38 | 18 | - | – | |
| ProSitePatterns | 37 | 54 | 18 | - | ||
| Phobius | 39 | 49 | 11 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 50 | 68 | 19 | - | – | |
| Phobius | 69 | 73 | 5 | - | – | |
| Phobius | 74 | 95 | 22 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| ProSitePatterns | 79 | 104 | 26 | - | ||
| Phobius | 96 | 106 | 11 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 107 | 124 | 18 | - | – | |
| Phobius | 125 | 135 | 11 | - | – | |
| Phobius | 136 | 159 | 24 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 160 | 208 | 49 | - | – | |
| Coils | 172 | 206 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0443100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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