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LotjaGi3g1v0444900.2

Overview

Field Value
Gene ID LotjaGi3g1v0444900
Transcript ID LotjaGi3g1v0444900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Mannan endo-1,4-beta-mannosidase-like protein; TAIR: AT2G20680.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q7Y223|MAN2_ARATH Mannan endo-1,4-beta-mannosidase 2; TrEMBL-Plants: tr|A0A151SEW7|A0A151SEW7_CAJCA Mannan endo-1,4-beta-mannosidase 2; Found in the gene: LotjaGi3g1v0444900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:85792012..85797091) extracted from Lotus japonicus Gifu genome v1.2.

AACAATTCGAAACAGAAACCATTGTGAATGCTATTAGAGGTATGACACTAATTAATGCAGAATTAAAGCACAATAAGTAC GATGAGAAATGTCTCAACTAGAAAACAAAAGAAAAGAAACCGTCATAAACACAACAGACCAACGAGAAAAGTGAGATTTT CTCCTTAGTCTAATCAGCAACAGTTAATATTCACAGAAACGATTCAGTAAAACACGGCATTGTTGTTTGTCCCTCTTAAA TGCTGTGAGACTGAGACAGTGGAGCTGAATCCCCACCCAGCATTGCTTCCTTCTCCTTCACAAACATTGATTTCACCGCA CATTCATCATTCATGCATTCAACTCTTCATCATTCATTCAATCTTCTCTGCAACTTGGACTAGTTTCAAGATAAACATGA TATGAGTCATTTTCTGTCTTCTTTGGGGTTGAACTGCAAAAGCAAAAACACCACAACAACCATTCCCATTTTCATGCAGA GTCATTATTCCCAACTCACCCTATAAATCCCTTTAATTACAAACCCTAATTATACCAATTTACTCCAAACCACAACTAAA TTTTCCCCATGCATTCATTCTTTTTGAGACCCTGATTTTCTTTTTCCTTTTTTCTTCTTGGTGAATTAGTAAAGTTAACA CCTTTGAACCCCATTCATACTCTTCTCATTACAAAAAGAGAGATCTTAGCATTTTAATCAATTGGGGTTTCATTGTTTCA AGAACAATCAAAATCAATTCTGGGTCTAAAGGTAGTGGCTTTTGAGCAAAAGGCCAAAAGGGTACCTGGGAACCACCCCA ATTTGTTGAATTTCGCTCTCAAACAATGGGGGTAAGAAATGGGATGTTGTATCATATTCTGGGGTTGTTATCGGTTTTGG CTTTCGTTTACATGTCATTTGGAGGGTTGAGGTTCAGGTTTGAGGAAGGGTCAGAAGTGGCTTTTGTGCAGAGAAACGGG ACGCAGTTTGTGGTGGATGGGAAGGCTTTCTACGTAAACGGGTGGAATTCTTATTGGTTGATGTTCCAGTCGGTGGATGT TGATTCCAGACACAGGGTTCGTGAAATGCTGAAAACTGGTGCTAAGATGGGTCTCACTGTTTGTCGAACTTGGGGGTTCA ATGATGGTGGTTATCATGCCCTTCAAACTTCCCCTGGTCGCTTTGATGAACAAGCTTTCAAGGTACTGTGTGTTGTTCCT AGAATTTGTACTGTTGTGTTCTTTTTCTTGTGTCTTTTCCTAATGCCGACAGAAATTTGTGTTTGTATGCGTGTATGACA GTGTTCTGGTTATTGTTTTTGTTTATTGGGGTTTTCTTTTTATTTGATTTTTGTCGTTGCCTTCTCAGGTTTTGTCTCTT TTCCTGAAATTGTGTTTGACTGTGTGATTGTAAACCTTGGCTGATTGTTGTAAACTTGTAACATATGACATGAATGGCGA TATACTTGTCGCTTTAGAGCTGAATATTATAATGAAGTAAATTGAGATAACATTGTTCTTGGGAAGTGATAGAATTCAGA GAAGAAGTGTCAGGCAGTCTCTCTTTGGGGTCAGTGGCTCAGTATCTAAGTGGAATCAATTTGAATGTGGTCCTTTTGTT ATGATCCTATTTGTTCATTAGCTAGATGATTCAACAAGAAAAACGTCGGTCTTGTGTTATTCCTACTTCACCGTCCTTAA TATATATGAGTTTTACAGTTGCCCTATAAATGGCGTCATGTTTCTGACTTCTCACGAAAATCAGTTTTATAGTGACTTGT TAAAATGGTTTCTACTAGAAGCAATGAGTGGTTTATTTTTGAAAATTCTCATGCTACACTTTTCAATAGTCTTTTAAAAA TTTATTCCGGTTGTCTTGTGGACTTATGTCTTGATGAATCTGTCTTTCCATTATGTCTGGATTGAATGAAAAATGCTTTT TGTTGCATTATTGATACTTCTTTTGCTCATGAAATGAGTAAGTTGTGTACTGCTCAGCACTATTTTTTGATGTATGGAAA GCATGCTGAGATTTGTTGGTGACTGGTAGCAGGCCTTGGATTATGTCATAGCAGAAGCAGGGCAACAAGGAATTAGGCTA CTCCTTAGCTTAGTAAATAACTTGGAAGGATTAGGTGGGAAGCCTCAGTATGTCAAATGGGCATGGCAAGATGGGGTAGG GTTAAGCTCGTCTGATGATTCTTTCTTCTTTGATCCATCAATCCGTAGTTATTTCAAGAATTACATCAAGGTATGACATG TCTATCTTTCTTTCTTTCCCCTCTTTCTATTTGCCCTATACCCTGCCATCTATGGTCGCAGAAGCATTGTCTTGTGCTAT TCAACATTGTTTTCATTTTACACACACATGGATAAACATACATACCACACAACTTTCTAGGAAATATGAATTCGACAGAT CTATTCATTGAATTAAAACTTCTTATTAAGTGGATCAAATGTGCAAAATTGTAAAAAAAATTAAAATCAGTTCATACTTT ATTAGACAACTCTATTTTAATATATAATATACTTCTTAAAATATGAGCAAATGTTGACTATAAGATTCCATACCTTTGAA TTATTGATTTATTTGAAATTTTGAGCAAATGATTACCATATTAATATCATATGAATTAATAGTTGGATTTGTTAAATTTA TATTTGATAGAAAGTTATTAAGGGCAAGAGTTGGTAAGTAGGCCATATTCTTTCCATTGACATCTTTTAGCACAAGCAAA TACCTTAAATTGCCACCTAGCAAGTTTAGTGATGATACTTTTGGACTGCTATGTTCCTTACGATTCCTAAACTTTGTAGG CCTAACTTTTCTATTTTTTTTATTAGCGCCTAACTTTTCTATGATTTATCTTACGAATGGTATACAGCATGACAAGTAGT TTGCATATTTGTTTCTGCTGGCCAGACCATTTTATTTGAAATTTGAGATGCATTTTAATCACTTTATTCCACCACCCCCA CCCCCTCGCCCCCGGAAAATTAAATCATGTTGACAAGCATTTGGAACTTGAGGCTGGCGATGGCATCTTACTGACAAAAT GTTCCACCATTTAGTACTTAACCATCTAGTTTTCCCACCCTATGAAGGAGTAAATTTGGGACTGAATCATCACTGCAGCA GTACAACCTTTGTGGGAAGCAAATACTGATATGACTAATGCAGAACTTTCTTTCCTTTTTCCTGCCTTGTATCCTTTTTA TTTTTTGGTCTCACTGCTTTCTGCTCGCCTATGATTCGTGACTTAATATGTGGGTCAAAATTACATCTTCATTTACATGC TAAGTTGTATGTCTAACGCATATCTGTACTGTCCATTCAATTTTAGCTAAAATGTTTGCAAACCAAGATGTTCTTAGATA AATTAACAGTTTACCTAAATTTTTGTGCAGACTATCTTGACAAGGAAAAATACTATCACTGGAATTGAATATAGAAACGA CCCCACCGTTTTTGGTTGGGAATTGATTAATGAACCTCGGTGCATGTCTGATCCTTCTGGTGACACTCTACAAGTAACTC CTTTGCCTGCTTTAACTTGACTACTTCAAATGTTCATGAAAAAATATGTTAGCAATATCAATAGCTATTTCAAAAATTAG ATTAATCACTTGCTGCTTCCTTTTTGGCTACGGGTTATAGAAATTAGCATTCATGAGGAGATTGAAAAGTTCAAATTTCT TTGTCTTGGAAGTCATGATCTCAAACGAATTTGTTCTGTCTATTTGCTCTAAACCACAGAATGCTGCACATTTTTCACTA GTGTGTAGCTGGTTTTGATTTGAAGGATTCAATATCTAATTTTAGCAATTGTTTCTGACAATAATTTTTGACTCCATGTT GAAAAATATATAGATAAAAATAAGGACAATGTTGAAACCTTTCAACTCAATTAAAATTGCTTTTGTTTTTAATGTAAATT CATAGGAAAGATAGGGGGAAATAAGAGCAGTTATTGTTCACATTTTATTTAGATATCTGAGTATACACTTTACTCAATTG CCATAGAATTGCAGGAGTGGATAGAAGAAATGTCAGCTTTTGTCAAATTGATTGACAAGAACCATCTGGTGACTGTTGGG CTTGAAGGTTTCTATGGTCCTCATGACCCGAAAAGTTCGACTGTCAACCCTGGATATTGGGCATCCCAAGTTGGGTCTGA TTTTATTCGGAATTCCAAAATCTCAAATATTGATTTCACCTCTGTTCATATCTATGGTGACCAATGGTAAGCATTGCATG AATACTTTATCTGTTTTAGATTTGCTCATAATCATAAGAAACAAGAACTAAATTTGAGAAGTGCCACAGAACACAATCTG CAGAAGGAAGTTCCATAGTTTTCTTCTGATGAGTTTTTTATGTTGTCTTCACTGATCAACTAGTGCAGCAAGAAATCTTG AGATTTATATTATATTTCCATTTTACATGTCTTATGATCTGCATTTGGAAGCACACATCCAAAATTTTCTGATGATTATT ATTTGAATAGGTCTTACAAGCAAGAATTTGAAGATCAACTGAAATTTGTCTCCAAGTGGATGCTTTCCCACATTGAAGAT GGTGATGAAGTATTGCATAAACCTGTCTTGTTCTCTGAATATGGATTGTCACAAAGAATCCAGAACTTTTCCGCGTCTGA CCGAGAGAAGATACACAAAACTATTCTAGACATAATTTACAAATCTGCCAAAAGAAACAAATCTGGAGCAGGTACTCTGA TTTGGCAATTCTTGGTTGATGGAATCAATGAGTTTTCTGATGAATATGGGATTGTGCCAGGGGGAAATTCATCAACTTAT TCACTGTTAGTTGAACAGTCATGCAGATTGGCCAAAGTTAAGGGATGGCCACAACAGGATGTAAAATTCAAACAAGTTTG TTAACAAGGCAATAGAAAACAAATATTATAATATAATAGAAATTTAGATAAAAGATGATTCCTTGGTTTATGGAGTTACA CCATGGGTTTTTGTACAATGTTGCAGTGAAATAATTACTTTAAAGTTGAGTACATACTAATACACTAGTGTGGTAACCAT GTACAAGAGATTTCTTATAAATAAAGTATTATTTAAACTA 

CDS sequence (LotjaGi3g1v0444900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGGTAAGAAATGGGATGTTGTATCATATTCTGGGGTTGTTATCGGTTTTGGCTTTCGTTTACATGTCATTTGGAGG GTTGAGGTTCAGGTTTGAGGAAGGGTCAGAAGTGGCTTTTGTGCAGAGAAACGGGACGCAGTTTGTGGTGGATGGGAAGG CTTTCTACGTAAACGGGTGGAATTCTTATTGGTTGATGTTCCAGTCGGTGGATGTTGATTCCAGACACAGGGTTCGTGAA ATGCTGAAAACTGGTGCTAAGATGGGTCTCACTGTTTGTCGAACTTGGGGGTTCAATGATGGTGGTTATCATGCCCTTCA AACTTCCCCTGGTCGCTTTGATGAACAAGCTTTCAAGGCCTTGGATTATGTCATAGCAGAAGCAGGGCAACAAGGAATTA GGCTACTCCTTAGCTTAGTAAATAACTTGGAAGGATTAGGTGGGAAGCCTCAGTATGTCAAATGGGCATGGCAAGATGGG GTAGGGTTAAGCTCGTCTGATGATTCTTTCTTCTTTGATCCATCAATCCGTAGTTATTTCAAGAATTACATCAAGGAGTG GATAGAAGAAATGTCAGCTTTTGTCAAATTGATTGACAAGAACCATCTGGTGACTGTTGGGCTTGAAGGTTTCTATGGTC CTCATGACCCGAAAAGTTCGACTGTCAACCCTGGATATTGGGCATCCCAAGTTGGGTCTGATTTTATTCGGAATTCCAAA ATCTCAAATATTGATTTCACCTCTGTTCATATCTATGGTGACCAATGGTCTTACAAGCAAGAATTTGAAGATCAACTGAA ATTTGTCTCCAAGTGGATGCTTTCCCACATTGAAGATGGTGATGAAGTATTGCATAAACCTGTCTTGTTCTCTGAATATG GATTGTCACAAAGAATCCAGAACTTTTCCGCGTCTGACCGAGAGAAGATACACAAAACTATTCTAGACATAATTTACAAA TCTGCCAAAAGAAACAAATCTGGAGCAGGTACTCTGATTTGGCAATTCTTGGTTGATGGAATCAATGAGTTTTCTGATGA ATATGGGATTGTGCCAGGGGGAAATTCATCAACTTATTCACTGTTAGTTGAACAGTCATGCAGATTGGCCAAAGTTAAGG GATGGCCACAACAGGATGTAAAATTCAAACAAGTTTGTTAA 

Protein sequence (LotjaGi3g1v0444900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGVRNGMLYHILGLLSVLAFVYMSFGGLRFRFEEGSEVAFVQRNGTQFVVDGKAFYVNGWNSYWLMFQSVDVDSRHRVRE MLKTGAKMGLTVCRTWGFNDGGYHALQTSPGRFDEQAFKALDYVIAEAGQQGIRLLLSLVNNLEGLGGKPQYVKWAWQDG VGLSSSDDSFFFDPSIRSYFKNYIKEWIEEMSAFVKLIDKNHLVTVGLEGFYGPHDPKSSTVNPGYWASQVGSDFIRNSK ISNIDFTSVHIYGDQWSYKQEFEDQLKFVSKWMLSHIEDGDEVLHKPVLFSEYGLSQRIQNFSASDREKIHKTILDIIYK SAKRNKSGAGTLIWQFLVDGINEFSDEYGIVPGGNSSTYSLLVEQSCRLAKVKGWPQQDVKFKQVC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 185 185 1.7E-210
Phobius 1 5 5 -
PANTHER 1 185 185 1.7E-210
Phobius 6 25 20 -
TMHMM 7 26 20 -
Phobius 26 386 361 -
Gene3D 36 185 150 8.7E-53
SUPERFAMILY 40 362 323 5.98E-56
PANTHER 185 386 202 1.7E-210
PANTHER 185 386 202 1.7E-210
Gene3D 186 373 188 2.2E-50

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0444900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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