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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0446500 |
| Transcript ID | LotjaGi3g1v0446500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT4G28430.1 Reticulon family protein; Swiss-Prot: sp|Q8LDS3|RTNLR_ARATH Reticulon-like protein B18; TrEMBL-Plants: tr|I1LUI2|I1LUI2_SOYBN Reticulon-like protein; Found in the gene: LotjaGi3g1v0446500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85985069..85988709) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTACTCTTCTCCGAAGCCTCTTATAGAGGATCTTATAGGGGAATTAAGTCAAGTGGATCTTAGCAGTGGCCATTAT GAATGTTCTTAGGCCCCTTCAAGTGTTTGGCTCATAGGCTATATATTATGTTAGTCAATTTGGATGTTAGTTCTAACTTG AAGATTAGCTTCCTAGTGTATTCTTGAAAAGTCTACAAGTGACCGTAAGGTGATAGTAGGAATATGAATTAAGTTCATTA CTATTAAAAGCAAGTTATGACCTTCGTTATTTGTAACATAGTTTGAAGCTCATAAACATGGAATAATATAATAAGCTCAC TATGAAAAGCAAGTTATGACCTTGGTTATTTGTAACATCTTCTTAGGTGATATAGTTTGAAATTTATGGACCTATTTTCT CTTAAGAAATTCTCGGTGGTAAGCTCTTTTCCACTTGACCTAATTCCTCTATAAGATCCTCGATAGTTAGGGATGGTAGG CTCCTTTCAACATGGATTTTTTTATAGGGACATGATCTGCATCGAAAACGTCGTCACTAATTTAAATCTCTTTATTTTAC CAATAATTTTTTTCCATATCCAAAACTTCGTTAATAATACATGCAAACTTTACTAGTATCTTAAACGATCAACGGATTTT AGATATAGAAACATAATATGTCATTAAAATAGACGAATTTAAATTAGCGACAGCGTAGCGTAAAAATTGCAATTAAGCCC TTCTCCCAACGGCTACTACCCAAAACATTTGCATTCAAATTCAAGCACCCCTGTGAGCTCTTCACACTCCAGTCCACACT CACTGTTGCAATCAACCCGCCACCACCACAACGCCATGGATTCTTCTCCACACAAACCGATCCCAGATCCTCTTCCTGCA CCTCTCGGAACCCCAACCAAGCCCCAATCGCCTTCCACCATCATCCTCCTCTCGCCTTCCCCCCTCAGAAAATCCAAATC CCGCCTCGAAATGACTGCCGCGGAGTCTCCGGAGTCCGCCGGGGTGCGACGGCGCGGCAAAAACAGAGGACCTCAAAATG GCGCGCCGGCGTCAGCTTCCCCAAGGAACAGTCGGAAATCAAGGAGACGCTCCGAGGTCGAGACTACTCGAGAAGAGAAA GACCTAGGGTTAGTGGAAGAGGTTGGAATGGGAAAACCCAAGAAGAGAAAGCATAGCGGGCGATCCAAGAAGGAAAAATT GAACCCGGTTCCGCCTCTTCAACCTTCAAATTCTCCTCCAAGTATGCCTATTTGATGATTCTACTTCTACCTATGTTCAA TTGTTACTGTTTTCTGTGTTTGTTTGTTCATTCATTTTTGTGTGATTTTGTGTTCAGAGGTTGAAGAAGAGAATGGTGGT GATTTAGAACGTTTTGGGCAGGTAGTGAATGATTTGATTATGTGGAAAGATGTGTCTAGATCAACCTTTTGGTTTGGATT TGGTTCTCTTGGCTTATTATCTTCCTGCTTTACTAGAGGACTCAACTTTAGGTTTGCAACTTTTCTTTTATCCATCTTTT TGTTTTTGGTGTTTACCTTTTGATCTGAGACTGTTCATGTTTTATTGAATTTATTCTTTCAGCATTTTCTCAGCCGCGTC GCAATTAGCTGTTCTCGTTTTGGGGGTTTCGTTTTTGTCGAATTCAATTTCTCATAGGTACAATTTTGCTTCTCATCATG GATGGTGGTAGATACTATATTACTATACTCCAAAGTAAACCCTAAACCCTTAATACTATTGAGTGTGTAATGTGTGCTAT GACTTGCCTATTTGTTTCAGAAATCAGGTTGAAGAAAAGCGCGAAATCAAGCTGAAAGAAGGTGACATTTTGCGTCTCGC GAAATGGATTCTTCCTGCATTGAATCTTGCGATTTCAAAGATGAGAGAGCTATTCTCAGGAGAACCATCCATGACCCTGA AAGTAATCCACAAACTGAGTTTTTTTTCTTTCCGGTCCATAATTTAATTGCTGATGGTTGCTCGATTTATCAGCATGTGT GTTCTTTTCTGATTGCAGGTAGCTCCTTTCCTTCTACTAGGAGCGGAGTATGGCCACTTCATTACAATCTGGAGGCTGTG TGTCATTGGTGAGGACATCACTCTATAACCTTTATCCAATAATTGTTTAGAGCTCGTTTGGATACCGAATAGAAAGTAGT AAATGAGAAAATAACGTCCTGACTCGTTTACATATTATCCAAGGGTTATCCAAACAGGCTCTTAGTTCTTCTCATACACT TATCTTACTAAATTGAACTTATATATGGACAGGATTTTTTGTTAGCTTCACTGTCCCAAAGCTTTATTCTTGCTACAAGG CTCAGATAGATCAGAGAGGTATGAGTCCTCCAACATACTGGAACTTTTGTAGGTCTGTCTACTTTTTTATGATTAATTGT AGAAAGTTTATTTCATGCAGCTGAGTGCTTAAAATTACGGTTGTTGGACACATGGTGTACTTGCGCTCACAAGAAGAAAG TTGCAGCATCGGCATTGATGACCTTCTGGAATGTATCTTCAATAAAAACCCGAATCTCCACAGGTATTAAAAGAGTTGAG AGCAGTTTATATTATATTATGAATTATAAGATCAGACACCAGAAGAGTAAGCTTAGACACCACAAGATCAGATAATGAAA TGGGTCACTGAAAGACCCGAAAATTTGACATTACTTTCTGAATGATGGTGATTATTATAATCAACCTTGAATAACGTTTT TACCTTCAAATCAGTCTCTCGATATGTATTTTATACAGAACTAGATTGATATCCTCATCTTTTAGGAAATTTTTGTTGAA TTTTGTTTTATCTTTTAGATGAAAGTGATTGAACCACTATCTTTTCAGGATGAAATTAACGGTTAACTCTTTCGTAGTCT TTGGATTAGAAGAAAGTTAGCATAGAAAATCAAAGTTTGCCTCAGGAGAGTCATTTTGTTTATATGCATTTCCTTGGTGT ACAATGAACCTTAAAATATAATTGAGTAGTGAATTTGGGACAGTTTTGCATATGGATGTGGCAACTTTGTGAAAATTGAT TCTTACGATATAACTTTTCCTTGCAGCTTTCATATTGCTTGTACTATTCAGATGTCTAAAGCAACAATTACAAGATGAAG AAGCACAAGTCGGTGAGAAGGAACAGCAGCAACCAATGATGGTGGATGAAACAGAAGAAAATGAAATTCAGCAGGCATTA GTGGTTAGGGAAAAACAGTGCTAAATCTAGCACTGTATTTTGATCAGGCCATTTACATCTAGCGGTCAAATATGATGGTT CAATGGTCAGAGATCATTTTCAAATTGATCCACCATGTATCGATCCTTATATTGTATTTGTACCTGTAGATGGGGTGTTT CTTTATAGTTTGGAAACATAAAATTTTGCTTTCTTGTGTTAGCTCATCATATATACAATCAAGAGACAACCTGTTTTGGT CAAGTCACAAATCTTGATCCCTCTCTGGCTTCCAATTTCAACATGTAAGATTGACTATGATGTCGCTTGGATACAAATTT ATTGGAGCTTATCTACTAGAAAGACACTAAATAAGCATCCAAACAGGTTCTATCGATATTCAATAATGAGAAACTTATTG TTTCTTTACAAGCACTGGATTCTTTACTTTAGAGAATGGAA
CDS sequence (LotjaGi3g1v0446500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTTCTCCACACAAACCGATCCCAGATCCTCTTCCTGCACCTCTCGGAACCCCAACCAAGCCCCAATCGCCTTC CACCATCATCCTCCTCTCGCCTTCCCCCCTCAGAAAATCCAAATCCCGCCTCGAAATGACTGCCGCGGAGTCTCCGGAGT CCGCCGGGGTGCGACGGCGCGGCAAAAACAGAGGACCTCAAAATGGCGCGCCGGCGTCAGCTTCCCCAAGGAACAGTCGG AAATCAAGGAGACGCTCCGAGGTCGAGACTACTCGAGAAGAGAAAGACCTAGGGTTAGTGGAAGAGGTTGGAATGGGAAA ACCCAAGAAGAGAAAGCATAGCGGGCGATCCAAGAAGGAAAAATTGAACCCGGTTCCGCCTCTTCAACCTTCAAATTCTC CTCCAAAGGTTGAAGAAGAGAATGGTGGTGATTTAGAACGTTTTGGGCAGGTAGTGAATGATTTGATTATGTGGAAAGAT GTGTCTAGATCAACCTTTTGGTTTGGATTTGGTTCTCTTGGCTTATTATCTTCCTGCTTTACTAGAGGACTCAACTTTAG CATTTTCTCAGCCGCGTCGCAATTAGCTGTTCTCGTTTTGGGGGTTTCGTTTTTGTCGAATTCAATTTCTCATAGAAATC AGGTTGAAGAAAAGCGCGAAATCAAGCTGAAAGAAGGTGACATTTTGCGTCTCGCGAAATGGATTCTTCCTGCATTGAAT CTTGCGATTTCAAAGATGAGAGAGCTATTCTCAGGAGAACCATCCATGACCCTGAAAGTAGCTCCTTTCCTTCTACTAGG AGCGGAGTATGGCCACTTCATTACAATCTGGAGGCTGTGTGTCATTGGATTTTTTGTTAGCTTCACTGTCCCAAAGCTTT ATTCTTGCTACAAGGCTCAGATAGATCAGAGAGCTGAGTGCTTAAAATTACGGTTGTTGGACACATGGTGTACTTGCGCT CACAAGAAGAAAGTTGCAGCATCGGCATTGATGACCTTCTGGAATGTATCTTCAATAAAAACCCGAATCTCCACAGCTTT CATATTGCTTGTACTATTCAGATGTCTAAAGCAACAATTACAAGATGAAGAAGCACAAGTCGGTGAGAAGGAACAGCAGC AACCAATGATGGTGGATGAAACAGAAGAAAATGAAATTCAGCAGGCATTAGTGGTTAGGGAAAAACAGTGCTAA
Protein sequence (LotjaGi3g1v0446500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSPHKPIPDPLPAPLGTPTKPQSPSTIILLSPSPLRKSKSRLEMTAAESPESAGVRRRGKNRGPQNGAPASASPRNSR KSRRRSEVETTREEKDLGLVEEVGMGKPKKRKHSGRSKKEKLNPVPPLQPSNSPPKVEEENGGDLERFGQVVNDLIMWKD VSRSTFWFGFGSLGLLSSCFTRGLNFSIFSAASQLAVLVLGVSFLSNSISHRNQVEEKREIKLKEGDILRLAKWILPALN LAISKMRELFSGEPSMTLKVAPFLLLGAEYGHFITIWRLCVIGFFVSFTVPKLYSCYKAQIDQRAECLKLRLLDTWCTCA HKKKVAASALMTFWNVSSIKTRISTAFILLVLFRCLKQQLQDEEAQVGEKEQQQPMMVDETEENEIQQALVVREKQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 165 | 165 | - | – | |
| MobiDBLite | 1 | 143 | 143 | - | – | |
| MobiDBLite | 7 | 21 | 15 | - | – | |
| PANTHER | 23 | 395 | 373 | 2.3E-168 | – | |
| PANTHER | 23 | 395 | 373 | 2.3E-168 | – | |
| MobiDBLite | 80 | 108 | 29 | - | – | |
| ProSiteProfiles | 152 | 303 | 152 | 13.533 | ||
| Pfam | 152 | 306 | 155 | 3.3E-34 | ||
| Phobius | 166 | 185 | 20 | - | – | |
| Phobius | 186 | 190 | 5 | - | – | |
| Phobius | 191 | 210 | 20 | - | – | |
| Phobius | 211 | 230 | 20 | - | – | |
| Phobius | 231 | 250 | 20 | - | – | |
| Phobius | 251 | 269 | 19 | - | – | |
| Phobius | 270 | 290 | 21 | - | – | |
| Phobius | 291 | 397 | 107 | - | – | |
| Coils | 353 | 373 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0446500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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