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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0446900 |
| Transcript ID | LotjaGi3g1v0446900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cap-binding protein; TAIR: AT5G44200.1 CAP-binding protein 20; Swiss-Prot: sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2; TrEMBL-Plants: tr|I3SEA9|I3SEA9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0446900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86009509..86013594) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTCATTTGCCCTATGGTCTGCCTATAATGGACCCCATAACCTAGGTGGCTTGAGAATGTGAGAATGTGGAAGAGG AAGGAGACTAGTTTGTTTTTGGAATTTTAAAAAGGAGTGAGTGAAAATTGGAGTGTCAGGGGTTGGGAATATCAACTCCC AGTCTCCCACAAAAAAGCCCAGTGAAGCAAACCCTGAAATTTGATGGACCGGACCTACAATATCGGGTCGAACCGATCCA GGTAAATGTTCATCTTGTCGGGTTTCCATGCCCTAAACGTGTTTCTCTCTGAATTCCAGAAATTCTCATTTCGCAGTGCT TGGAGCTCAGCCACACATGGCGTCGCTGTTCAAGGTACACCACTCCACACAACACTGACAATGGCCATTCCGATTCAACA ACAACCATGTGTGTTTTTCTTTATGGTCTCATTTGAGTTTTTTGAGCGTGTTGTAGGATCTCACGAAGCTCTCGGCGTAT CGAGATAGAAGATTCCCTGGAACGCAAGATGAGTTTGAGCAAGCTCTTCTGGCTTCCACCACCGTTTACGTCGGGAACAT GTCGTTCTACACCACGGAGGAGCAAGTTTACGAGCTCTTCTCTCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGG ACAAGAATACCAAAACCCCCTGCGGTTTTTGTTTCGTTCTGTAAGTCCATTTCACCATTCTAGTGTAATCTAGTCATTAG TTTCTAGGAACTACAAATTTTAGATAACTCTAGGTTTCTGAATAGTAGTCATTGTTCAGTGATAATTGCAGTATTGATTG ATGATTCTGTGTGTGTGTATTGCTAGATATTACTCTCGTGAAGATACTGAGGATGCTTGCAAGTACGTAAGTGGGACGAT ACTGGATGATCGTCCTATTCGTGTTGATTTTGACTGGGGATTTCAGGAAGGAAGACAATGGGGTCGTGGTCGTAGTGGTG GCCAGGTGAAGCTAGCTTCCTAATAGTAGCCATGTCACACACTTCAGCTCTTTTTCATTGATATTTTTTGAACCTTAGTA TCATTGAAGATGAGAATATGGCCATAATTTTGTATACTTTATAGCATTTTACTATGGTTATAATCACCTCTGTTATCAAT TATCTCTTTCGATTTCCAAATTGTGCTTTATACTGATTTTTACATGTTGCGTTATAACTGTGTTGAATTTACTTTGTCCC TCTGTCCATGTCATATTGTATTCGTTTCCAGTCTTGTGTTTGTTATTTTCTTTCTTCCTTGCTTACATTTCCTATGGCTG TTTTTGTTCTTGGGTAATATTAACTGCCGCTCTGATACTTTGTGCAGGTCCGTGATGAATATCGCACTGATTATGATCCT GATATCCTTTTTTAAGATAATTTTTTCTGTAATTTACATCCTTTTATAGATTATATGCTTGGTTTTCTCCTAGTACTGTC AAGATCGTGAGGTTGCACAATCTTGTATCCTAACGCCTATCTCCGATCAAGATCGCGATCTGAGTCAGGGGGATCGTGAG ATCGCAGATGCGATCCGATCTTCAGTTTGCTGGGCTTCTGGGTCCAAATTCGGGTAACCTGTTTGCAGCCCTGATTGCAC GAGCTTAGGTCTCCTCTTCCATTGAAAACGGAAAAATCTTCCATTGCTAACATTTGCTCGACCTTGTCCCTCTTGCTGCA TTTGAATTACCCCTTTTGTGCAACTCTATGTTGGAGTTCCTGATCTGAGATTCTGGTTCTTCCTCTCATTTTATGTGGCC TGCCTTTCCGTTTCTTGTTCTTCCTTGGTGAACTGTGTTTCTGTGTTCTCATTCTTCCTCTGATTCGGGTTTCTTGTTCT GTAGTGCAATTTTGTATAACTAGTATGGTTAGTTGATAATTAATCTGAGCAATGAACACATATAGTCAAGTTTTGCTTTA GCGAGCAGTTATGGCTTTCTATTGTTATGCTTACTGAACTTAATTCGTAATAATATAGAATTGACATTGCATTTGATTAA GTATATTCCGATATACTCTAAATAAAGAAAATATTACTTGCTACAGTTTTGATAATTGATACATTCAAATTGATATTGAT TGTGAATACTCTCATGCCTTCCTTTGATATTTGGCTGCAAAGTTACTTCAGAAAATACTCTCATCTACTCATTTTTATCT GCACTCTTTTATTCACTTCATTGCTCAGATCAGTCTTAAGTTATTATACTAGTCTCCTTTTAGTTTCCTTAATTCCAAAT ACGTAGAGGTGGTTATGGAAAGTTGGTCCAGAAAGAGTTAGAAGCACAAAGGCAGCTTGTGGATTATGGTTCTGGGTCTT TGGGATCTTTCCCTCCAATGGTTTCAACTTCCTGTAAGTGACTCCATATTATTTGTAGATCTTTAGCTGCTAGGAGTAAC TTTGGCTTGACATTTCACATGATTTTACATTAAAGTTTTAATACATGGTTCTTTCTTTTGTACTTTTTTGCTTGTCATAT TTCTAAATTTTGTGGCAAATTATCCACCTGCTTGATTTTTGAGAAATATTAAGTTACACTGATTGGAATGTGCATCTAAT TATGGACTGATGTCACTTACTCATCAAGCCATGCCTATGCCTAACATTGTGGATGTGGTTATATGTGCAAATTCTCCAAC TATGTGCGTTCATTCGATTAGCCTGTCCGCTCCTGCATTCTATTTAATGTGCAGTGTATAGACCGGGCACTAATAGATTA GGTCTGTTAGAAAGTTTTAGGCTAATATAAATGTCATTGTCGATAAACTAAGTTGGATCTGGAAAAACTCTCTCTCTCTC TGAAGGAAGCAACACATTGACATGCCTGTTAAATCTAATAATGCATTAAAAGTTGCAAATTGAAAAATCTTTATGGTCTT GATCTTTTGTAATTTTCTGTTCAACATTCAATTGAATATTCTCTTTGGTTTATTATAGACCACATATTCCCTAATACTGT ATGCCAGGCCAAAGTACATAGGGAACCATCTCCACTTTTTTTGGTTGCTTTGTTTCGGCCATTCAATTTTATTTTACGTA CTTGAATTAAGTGTGAGTTCCTTGGAAATTAAACTGTTCAGTTATTTTACTCTTGCAGATGGTAGACACGGCAGAAACCA TGGTCACGGTGGTTCCCATCGGCCTGGTAGAGGTAGTTTAATATCTAGAAAATATCTTTTGTCCATTAATTTTGATTTGA TTTTTCAGCTCTTAAAAAGGTTACTGGTACTGATTTGCCTTTGAATTTACCGTTATTAATTTAATATGTCTCTTTGACAC GATAGATTACCATAGGAAGAGACACAGGGATGATGACCATCACACAAACGAGTCCTCAAAAAGAACATCAGATCATGAAT CCCGGAGGAACTCTGACCATGAATCTCGACCGGTAAACTCAATAAATCTGAATGATTCTTCAGACTAGTTGATAATTTTA CATTGTTTTCTTCATTTGTCATTCCTATTGTACCACATGGGCTATGGGATTTATTTCTTCATTTGAAGGCATGATACTTG TATTTGTGTTCCTCTTATGATTGCAATAGTCATAACTGCTGGTGTTAGTTGATATGCTAGTTCAAAAAAAAAATGTTTCC CCCTAATTTTCGCCTATTGATGTCTTAATTAATTACTTGATTTGATCTGCAGGAAAAAAATCCACGATTTCGTGAGAGTG GAGATTCTGATGATGAGGAGGAAGATGATAGAAAAAGACGGTCTTAACCATAATTTCATACTAAACCAAGTTATTTTGCA ATGGGAAATTTCTAGTGACATGATTGAAAGTGGAAGATTGTTTATTGTACATCATTGCAAATATCTCACTACTAGTTTAA CCTTGTGAAATTCTTGGCTGTATCTGCTGCAAATGACACTTTGTTGCTGTGTATGTCTTGTCACAATTTTTTCTTATCTT GGCCATAATCAGATTTACTTAACTTTTCGGATCTAATGCTCACCGGATCAGCATACTATGCAAACGTTGTGGCATTGAGC CTGTTTGCTTGTGTGTGTATGAACTATTTGCATGCCATCACAATGTGTATTTCTTTTTTCATGGTATAAATATTATTTCA TCATGC
CDS sequence (LotjaGi3g1v0446900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGCTGTTCAAGGATCTCACGAAGCTCTCGGCGTATCGAGATAGAAGATTCCCTGGAACGCAAGATGAGTTTGA GCAAGCTCTTCTGGCTTCCACCACCGTTTACGTCGGGAACATGTCGTTCTACACCACGGAGGAGCAAGTTTACGAGCTCT TCTCTCGAGCTGGAGAAATCAAGAAGATCATCATGGGCTTGGACAAGAATACCAAAACCCCCTGCGGTTTTTGTTTCGTT CTATATTACTCTCGTGAAGATACTGAGGATGCTTGCAAGTACGTAAGTGGGACGATACTGGATGATCGTCCTATTCGTGT TGATTTTGACTGGGGATTTCAGGAAGGAAGACAATGGGGTCGTGGTCGTAGTGGTGGCCAGGTCCGTGATGAATATCGCA CTGATTATGATCCTGGTAGAGGTGGTTATGGAAAGTTGGTCCAGAAAGAGTTAGAAGCACAAAGGCAGCTTGTGGATTAT GGTTCTGGGTCTTTGGGATCTTTCCCTCCAATGGTTTCAACTTCCTATGGTAGACACGGCAGAAACCATGGTCACGGTGG TTCCCATCGGCCTGGTAGAGATTACCATAGGAAGAGACACAGGGATGATGACCATCACACAAACGAGTCCTCAAAAAGAA CATCAGATCATGAATCCCGGAGGAACTCTGACCATGAATCTCGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGAGAT TCTGATGATGAGGAGGAAGATGATAGAAAAAGACGGTCTTAA
Protein sequence (LotjaGi3g1v0446900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLFKDLTKLSAYRDRRFPGTQDEFEQALLASTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFV LYYSREDTEDACKYVSGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDY GSGSLGSFPPMVSTSYGRHGRNHGHGGSHRPGRDYHRKRHRDDDHHTNESSKRTSDHESRRNSDHESRPEKNPRFRESGD SDDEEEDDRKRRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 245 | 245 | 1.9E-95 | ||
| PANTHER | 1 | 245 | 245 | 1.9E-95 | – | |
| Gene3D | 5 | 120 | 116 | 1.2E-26 | ||
| SUPERFAMILY | 28 | 144 | 117 | 1.25E-32 | ||
| ProSiteProfiles | 34 | 112 | 79 | 15.085 | ||
| SMART | 35 | 108 | 74 | 1.2E-22 | ||
| CDD | 36 | 113 | 78 | 6.52239E-52 | ||
| Pfam | 36 | 106 | 71 | 7.9E-14 | ||
| MobiDBLite | 119 | 143 | 25 | - | – | |
| MobiDBLite | 124 | 138 | 15 | - | – | |
| MobiDBLite | 161 | 253 | 93 | - | – | |
| MobiDBLite | 182 | 196 | 15 | - | – | |
| MobiDBLite | 197 | 253 | 57 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA cap binding | Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Nuclear cap binding complex | A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export. | ||
| Biological process | MRNA cis splicing, via spliceosome | The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript. |
Expression pattern of LotjaGi3g1v0446900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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