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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0449800 |
| Transcript ID | LotjaGi3g1v0449800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT2G42570.1 TRICHOME BIREFRINGENCE-LIKE 39; Swiss-Prot: sp|Q9SIN2|TBL39_ARATH Protein trichome birefringence-like 39; TrEMBL-Plants: tr|A0A151SEP4|A0A151SEP4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0449800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86349732..86354382) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAATCCAAACCATCGGAATCCCAGAAATTTCCAATGTAGGGATCAAAAACGAGATCCAACCCCACCACATGCTGCTG TTTGAAGAAAGAATCCACCTAAACTTGCACTGATTCTATCATCCAAATTATAATAATTTAAAAAAGAGAAAAGAAAAGAA ATAAAAGGGTATTGGATCAGTTTTCACATTCTTCACCCTCTATTCACTCTGTGTTGTCTCTATCTCCCTCTCTCTCTATC TCTTCACAAACACATGATTATTTACATTATATAAGCTTCTGTTCCAGACAACTTTTTCTGCACTCCTAGTCCTTTTTTTC CTTCAACAAAACAAAACCCTCTCAATAGGAGGGTGGTGATAATCAAGGATCGAAACCCAAGAAAGAATGGGTTTCCTTTT ACCAACTACTCTGTTTCTGTTTCTGTCTCTGTTTGCTCTGTTTTCCCACCAAACAGAGGCTGAGTTCTTGAACTCTTTCT CCACCACCAATGCAACAACCACCATTTCCAGAAAGCTCGCTGGAGGAAGATGCAACTGGTTCCGTGGCAAATGGGTCTAC GACCGTTCCTACCCTCTCTACAACCCTTCTACCTGTCCCTTCATAGATCCACAATTCAATTGCCAAAAGTACGGTCGCCC TGACACACTGTACCAGCAATATAGGTGGCAACCCTTCACTTGTCCTTTACCAAGGTACATCCCTTAATTGCTCCATCTTT GTCTTCTTCAATTCAACCATTTTCATTTGTATCGAGAAGTTTCACATTGACTAGACGTATAACTAAGTAGCTCATTATAA TTGTTTCATATTTATATTCACAGGTTCAATGCTTGGGATTTTCTGCTGAAATACAGAAACAAGAAGATTATGTTTGTAGG TGACTCTTTGAGCTTGAACCAGTTCAATTCACTGGCTTGTATGATTCACTCTTGGGTGCCAAACACAAGAACCTCATTCT CAAAGCAGAACGTTATCACCACAATAACATTTGAGGTTTGTTTTTGATTTTTTTTTTTAATTTTTTCATTCTTGTTGTAC TATTTTTGTGCTTCTTACTTTCTCTCCTCTCTCCATGTTTTAATTTGAAAATTGGGCATTGAATGAGAGTGCTGGAAATG ATGATTGTTTGGTGTGCTTTGTTTAATTCATGCAAGTAGTGTCGTTTTCCCTGCACCTAAAAGTTGAAGAGTCTTTTTGT TTTGTTTTGTGAGTAATTGCCATATTTGAACCCAAACCTTCAAGTTTGATCCATTTGAATGTGTGCTGTGTGGCACTAGA GCGTGAGCAATAAAGTTTGAGACGTGATTGGTGGGGGTGTTTACCTTTTGCAGGGGACATTTGTGATTGTTAATTAAATG GATAATAAATGTGAATCTTTACTACTTCTTCTTTTTTGTTCGTGTTGGTTTGGTATATTATTCTTTAATGGTGTATTTAT TAACATGGCATTCTAATTTTTCTAGTTTTCTTTTTAGAAAAAGCTAGCAAACACACTTTTTAAATACCCTTCAACACTAT GATTTATTTTATTTATAAAAATTTAACTTTTTTTAGAAAATATGATAACATTTTAAAAAATAAATAAATTATAATAAATG TGTTGGAGTGTATCTTTAAAAGAGTTGGATTGGTAGCCCTCATCATTTTCTTTTTCACATAAAGTGAAGTTTCCGGTGCA CAGAATTTGAAAAGTTGCATAAAGTATTTTGATGTATTAATAGCTTAATTTTTAATTTAATATTGAAGTTCATTAAGAAA CTAAAATGCATTAGATTATCTTATCGAACTGTTACTTTTTCTACAGAATTCGAACGTGCGCATAATTTTCTTAGATCAAA AGAAAGGATAAAGAGAAATCATTTCTCTTTTGCTTTTTTCTTCCTTATTTTCAATACCTTGCTTTATGTGACAACTTTGT TAAACAAATTTCTTAATTAGCAATGATTAGTGTTGGACCTCTTGTTTTTCCTCCTAATCTTTGCCCTTTGGCAACTAACA CCACCCTGTCTCAATCATCATTACTGGTAACTAAATTATGAACATAACGCAACTGTAATGATTGGCAATTTGATATATTT GCCTTCTCTGATTGATTACCCATGATATACGCTTCAAATGTTCAATCATGTTATTTACCACAATATTACAAGCATTATTA CACAATATTATTGCTATTGAGTTCAATCAAACAGAACAAAGTTGAAGTGAGCCATTAAATTATTTCGATGCTTGTGTGTA TATATGTTCTGAAAATAACAATTAATTTGTAAGTAGTTCTTAATCACTTTCACAATGGACCACTTGACACGATACGCTTG ATTCAGACGCAGCCCTCTACTTCCACGATTTTTCTTGTATAAATTCAAAGATCAAACTGCAAAAGTGTCAAAGAGTGGGC CACTTCTTGGTGATGAGATTTTCTTTTGTCTTCTACCTAGTTATTTTTATTCCATGATCCTTTAATTTATTCATCCAACC TTGAGGCAAGAAAACTCATCACTCAAAAGTAAATGGGTGGGGGAATTTCTTAGGTAGTAAGCTTAATCACTTTGTCAAGT AGTAGCTCACTTGAAGAAAAGTATCAAAAGAGAAAAGTTATTAGAAAATGCAACAAAAAAGTATGGTTGTGAAAAGATTG TTCACGAATAATCAAGTGAGTAGAGGTTTAATTCTTAACTTTTATAAATGATGAAAACTTATCGGTAAGCTAACTACTTA GTGTGTTAATTGTGATGTGAGAGATTAGTTTCATGGCTATCGATGTTAATGATATCTTGGTTAAAACTAAAAGTTTATTC TCAAATGATGCTTAATTTTTTTTATTTAATTTCAGGATTATGGTCTTCAATTATTTCTATACCGCACACCATACTTAGTA GACCTTGATCGTGAGAAAGTTGGACGTGTTCTGAAGCTGGACTCAATAAAGAGTGGTAATGCTTGGAGAGGGATGGACGT GCTGGTATTCAACACGTGGCACTGGTGGACCCACACAGCAAACGCCCAGCCGTAGGATCAATCTTAATCTTCCACATCAT CATGTCATCATCAATTTCGTTATTATGGTGATGATGAATTAACACTAATTATTCTGTGTTCATTGATTGTAGGTGGGATT ATATTCAAGAGGGTAACAAGTTGTCCAAGGACATGAACCGATTCATTGCATTCTACAAGGGTTTGACAACTTGGGCTAGA TGGGTTAACATCAATGTAAATCCAGCCCAAACCAAGGTCTTCTTTTTAGGAATTTCTCCTGTCCATTACGAGTAAGTTAT TTCTACTTCTGCTTCCATTTCATTGATTATTTAAGTAGTAATAGAATGTAGATGCACAATATTTACTTAAATAATAGAGG AACATGAAAAATAAGATTACACATTCTAGTTTTACTTGAAAATTTCATTTTTTCATGCCTAAAAGATTGAAAAAAAGACT ATCAATTGAATTTTATGTGTGTAATTTATCTTTTTGATGTACTAAAAAATTAAATTTTATGTGTGATGCAATTTTACAAG TAAAAAAAATAGTGAAAATTTGTTAAATTTTGAAGGAAGATCAGGGTGTTAAGAGGTGGGAAATGGGAATTTTAACTTTT TTTATTGATATTAATATTTTGATTAGGGAGTTTTGATGAAAATAGTGTTCATGATTATTAAATTGATTCAATTTGTGAAG ATTTTTTTTAAAGAATGCAAATTTTAGAGTTTTAAGTAGGAAAAGAATAATATAGAGACTTAATTTGCAACAATTGAAAA GTTGAGGGACTGCTAAAAAAATTGGTGCTAAAATCACCCATAGTCAAAACTAATGGACCAACAATGCAATTAAATTAGTA AGTTTTATATTTCAGAGATGAATTTTTTGTTGACTGTCCATTGTGGTGTATAAATCATAACATATTTGTGTTGGTAAATT AGGGGGAGAGATTGGAATCAACCAGCAAGATCATGCATGAGGGAGACAGAACCTTTCTTTGGTTTGAAGTACCCCGCAGG GACACCAATGGCTTGGGTAGTGGTGAACAAGGTTCTAAGCAGGATAAAGAAGCCAGTGACTTTTCTAGATGTGACTACTC TCTCACAGTACAGGAAAGATGCACATCCTGAAGGGTATAGTGGGATTATGGCAACTGATTGCAGCCATTGGTGTCTTCCA GGACTTCCTGATACTTGGAATGTGCTTCTGCATGCATCTCTCTTTGGTTGAAGACTTGATATATAGCTTAAATTATTTAA TAGGTGCAATTTATTAGAGGAAAACTTGTTGTTTTCTAATGTAGGAAATAGTTAATTTGGCATTTTGGCTTCTTGAAATT GGACAATAAAAGGGTTGATTTGATGCTCCTAATTGTAAATTTTCATATTATTTTGCCAGAAACATGCATTCATTGTACCG AATTACACTCCCCTTTGGAATATTGAAAAGCATTTGCATTTTACTTTGGATTGGAATAACTTGTTGCTGGATTGTTGTGA ACAAGGTACTTTATGAAATTCCTCTTTTTTGAAGCTTAAGAATGAAAAAGCAAAGCAGAGAATCTGATCTCCAACTTTAG CATCAGCAGTTCGCTTTAAATTACCAGGGGGGTGAGAATAAGGCATCCAGATTTAGATGAGAGTCAATTTTGAGGGAGTT CATGGTCGAGT
CDS sequence (LotjaGi3g1v0449800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCCTTTTACCAACTACTCTGTTTCTGTTTCTGTCTCTGTTTGCTCTGTTTTCCCACCAAACAGAGGCTGAGTT CTTGAACTCTTTCTCCACCACCAATGCAACAACCACCATTTCCAGAAAGCTCGCTGGAGGAAGATGCAACTGGTTCCGTG GCAAATGGGTCTACGACCGTTCCTACCCTCTCTACAACCCTTCTACCTGTCCCTTCATAGATCCACAATTCAATTGCCAA AAGTACGGTCGCCCTGACACACTGTACCAGCAATATAGGTGGCAACCCTTCACTTGTCCTTTACCAAGGTTCAATGCTTG GGATTTTCTGCTGAAATACAGAAACAAGAAGATTATGTTTGTAGGTGACTCTTTGAGCTTGAACCAGTTCAATTCACTGG CTTGTATGATTCACTCTTGGGTGCCAAACACAAGAACCTCATTCTCAAAGCAGAACGTTATCACCACAATAACATTTGAG GATTATGGTCTTCAATTATTTCTATACCGCACACCATACTTAGTAGACCTTGATCGTGAGAAAGTTGGACGTGTTCTGAA GCTGGACTCAATAAAGAGTGGTAATGCTTGGAGAGGGATGGACGTGCTGGTATTCAACACGTGGCACTGGTGGACCCACA CAGCAAACGCCCAGCCGTGGGATTATATTCAAGAGGGTAACAAGTTGTCCAAGGACATGAACCGATTCATTGCATTCTAC AAGGGTTTGACAACTTGGGCTAGATGGGTTAACATCAATGTAAATCCAGCCCAAACCAAGGTCTTCTTTTTAGGAATTTC TCCTGTCCATTACGAGGGGAGAGATTGGAATCAACCAGCAAGATCATGCATGAGGGAGACAGAACCTTTCTTTGGTTTGA AGTACCCCGCAGGGACACCAATGGCTTGGGTAGTGGTGAACAAGGTTCTAAGCAGGATAAAGAAGCCAGTGACTTTTCTA GATGTGACTACTCTCTCACAGTACAGGAAAGATGCACATCCTGAAGGGTATAGTGGGATTATGGCAACTGATTGCAGCCA TTGGTGTCTTCCAGGACTTCCTGATACTTGGAATGTGCTTCTGCATGCATCTCTCTTTGGTTGA
Protein sequence (LotjaGi3g1v0449800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFLLPTTLFLFLSLFALFSHQTEAEFLNSFSTTNATTTISRKLAGGRCNWFRGKWVYDRSYPLYNPSTCPFIDPQFNCQ KYGRPDTLYQQYRWQPFTCPLPRFNAWDFLLKYRNKKIMFVGDSLSLNQFNSLACMIHSWVPNTRTSFSKQNVITTITFE DYGLQLFLYRTPYLVDLDREKVGRVLKLDSIKSGNAWRGMDVLVFNTWHWWTHTANAQPWDYIQEGNKLSKDMNRFIAFY KGLTTWARWVNINVNPAQTKVFFLGISPVHYEGRDWNQPARSCMRETEPFFGLKYPAGTPMAWVVVNKVLSRIKKPVTFL DVTTLSQYRKDAHPEGYSGIMATDCSHWCLPGLPDTWNVLLHASLFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 3 | 18 | 16 | - | – | |
| PANTHER | 11 | 365 | 355 | 2.1E-194 | – | |
| PANTHER | 11 | 365 | 355 | 2.1E-194 | ||
| Phobius | 19 | 25 | 7 | - | – | |
| Phobius | 26 | 367 | 342 | - | – | |
| Pfam | 48 | 99 | 52 | 4.9E-22 | ||
| Pfam | 101 | 363 | 263 | 1.7E-87 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0449800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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