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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0450900 |
| Transcript ID | LotjaGi3g1v0450900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification protein; TAIR: AT1G06330.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|F4IC29|HIP28_ARATH Heavy metal-associated isoprenylated plant protein 28; TrEMBL-Plants: tr|I3SJR5|I3SJR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0450900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86433379..86435209) extracted from Lotus japonicus Gifu genome v1.2.
GGCAAACTCATATTATTGCTGTATTCAGAGAGATACAAATCAACATCATAAAAGTGATTCAAAGTTTCAAACTATACACT ACAGGCAAAATGACAGTAAGAAACTCCACTTTCTTTGTCTATTTTTTCGTTTGATATATGTATATCATGCATATTCATAT TATCATATATATATATATATATATATATAAATCAATGTTTCCTTCTTTAATTTCTTTCAGATCACAGAGATGAGAGTACA CATGGATTGTCCTGGATGTGAAAACAAAGTAAAAAGTGCACTTCAAAAACTAAAAGGTATACATACATTATATTGCCTTC ATTTTTGGATGCAAAATACCATGTAGATCGCATATTTTTGAAAACCGGTCTGGACGATAAAGGGTTAATTTGGTTGGTTG AACCGAAAACTGTTTATAATCGGTCTATTTGAAAAGAAAAAACTTATAGATTTCATAATAAGGAGAAAAGTTAGATACAA TATGTGTTAATATTGTTGCTCAATGAGAAATTCAGCTACTCATTTTCTTATCGATTTATTAATATTTTAATGTGATAAAG AAAATGGATAACTGGGATTTTAATTATGTCGTAGTATAAATAGCACCTAGAAAACTGTATCTAAGTTCTCTTTATCTCAT GATCAATTAAGAATCGGTCAAAATCAATGCTATATATTGAGCCGGTCGGAACCGATATATTTGAACCGGTCATATTTTAT TTCTAGTTCAATTGCTTAATTTTTCATGTATCTGATTCTACATTCTTATTTTCTTTCTCTTCCTTTTTCTTGTGTGCTCT TTACATGTGTATGGTTTTATTAAGGTGTGGATAACGTTGAAATAGACATGAGCATGCAAAAGGTGACTGTGAATGGGTAT GCTGACCAGAAGAAGGTTTTGAAAACAGTTAGAAAAACTGGTAGAAGAGCTGAACTGTGGCAACTTCCTTACACCACAGA TTCCCAGAACCAATATGTTCAACAACACCATTGCAATGGTCCTGTCAACTTCTATGGTTCCCAACCTTCTTCATCTTATA ACTACTACAAGCATGGTTATGATAGCAGTGATCCTCGCTATTATCACTACCCTGCAGGCCAATCTTCCAGCATCTTTGGC CATCAAGCCGGTGCTGCTTTCAGTGATGACAATCCTCACGGTTGCTCAATTATGTGATCTTTCCATTCTAGGACGAAGAT TGATCTTCTCTCCCGGTTTGTTGTCCCTATCACGTCCCACCGGCCAATCAAATATTTTTACATGGTTGAATTTTAAATGA CATGATATAGTTTGATTGGTGAGATAAAAAATAAGTCTTTCAAGTAAAATCATATATGTGCTTTTTCATAAAAAGTGTAT GAAGCTTTAATTAAAGTTCTGTCCATTTAGACTGTAAATTTTCTCTTGAGTTACTCAAGTATGTGTGCCTTTATAGTCAT GTTTGTACCTTTACTTCTTCTACAATTTAAGGTCGAGGTGTTTCCATTATAGGTTCATGAATCATGATGGTGTAGTGATT CTTTATAACATAATTAAAAATCAACCTGCAGTTTGAATATAATTATTAATTCTAGTCTAAAGGTAATGATGACTTTTTAT AAAAGGAGGACTAAATATTTTGTTATTGATGGACTCATAAGATGTATAGTTCCTTGGTTGCTTCTATATTAACTTTGTTG ATGCTATAATTATTCAACAATAAACATTATAAGAAACTTTAAATTTGTTTTGTTCTTACTTCTTTCTACTCTTAGTTAGA ATAGTTGTAATGTATCAAAAAAAAATTGAGCAGTCAAATTAAAGGATCGCTTCATTTAACTTAAAATTCGG
CDS sequence (LotjaGi3g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATCACAGAGATGAGAGTACACATGGATTGTCCTGGATGTGAAAACAAAGTAAAAAGTGCACTTCAAAAACTAAA AGGTGTGGATAACGTTGAAATAGACATGAGCATGCAAAAGGTGACTGTGAATGGGTATGCTGACCAGAAGAAGGTTTTGA AAACAGTTAGAAAAACTGGTAGAAGAGCTGAACTGTGGCAACTTCCTTACACCACAGATTCCCAGAACCAATATGTTCAA CAACACCATTGCAATGGTCCTGTCAACTTCTATGGTTCCCAACCTTCTTCATCTTATAACTACTACAAGCATGGTTATGA TAGCAGTGATCCTCGCTATTATCACTACCCTGCAGGCCAATCTTCCAGCATCTTTGGCCATCAAGCCGGTGCTGCTTTCA GTGATGACAATCCTCACGGTTGCTCAATTATGTGA
Protein sequence (LotjaGi3g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTITEMRVHMDCPGCENKVKSALQKLKGVDNVEIDMSMQKVTVNGYADQKKVLKTVRKTGRRAELWQLPYTTDSQNQYVQ QHHCNGPVNFYGSQPSSSYNYYKHGYDSSDPRYYHYPAGQSSSIFGHQAGAAFSDDNPHGCSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 67 | 67 | 2.75E-17 | ||
| Gene3D | 2 | 65 | 64 | 3.4E-19 | – | |
| PANTHER | 3 | 144 | 142 | 2.3E-72 | – | |
| PANTHER | 3 | 144 | 142 | 2.3E-72 | – | |
| CDD | 5 | 64 | 60 | 3.19258E-15 | ||
| Pfam | 7 | 61 | 55 | 1.3E-16 | ||
| ProSiteProfiles | 10 | 65 | 56 | 12.864 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0450900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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