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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0451600 |
| Transcript ID | LotjaGi3g1v0451600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT2G20590.1 Reticulon family protein; Swiss-Prot: sp|Q6DR04|RTNLQ_ARATH Reticulon-like protein B17; TrEMBL-Plants: tr|I1KEZ4|I1KEZ4_SOYBN Reticulon-like protein; Found in the gene: LotjaGi3g1v0451600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86504137..86507822) extracted from Lotus japonicus Gifu genome v1.2.
CTAGGAACCATTTGTATTTTGTAGCAATAACCGTTGAAGCATGGGGTCCCATTCCAGCACCACTAGATTTAGAATGGCGC CTTTCTCCAACGGCTACAACACCCAAAAACAAATATGTCTGCATAACTCAACAGAATCTAGCATTCCAATCTTACCTCAA TCTCATCACTCACTTGCATTCATGGATTCTTATTCTTCACATTCAGCTACCACCACCCCTCACCACCACCACCGTCACCA CCACCGTTCTTCTGATCGGAGCAGATCTCGAACCTCTTCCACCTTGGCTCGCATCGGTGAAAATGGAATTATAGAGCCTA TTCGCATATCTCTCGACCTGGTTCCTTCACCAACCACCATCAAACTCCCATCACCATCATTATCATCGCGTTCACCTCTC TCCCTTCTGCGTTCTCCTAACTCCTGTCTCCCACTCCGGGAGCTTCTCCTCATGTCTCCTTCTCCGGCGAGGAAGTCCAA GCCACGGTTCGACGATGAGCTCCTGGAGGCAGGTTCCGGTGTTCGCCGCCGGTGTAAGAGCCGAGGGGCGCAGATGGGGT TGCTCTGTTCGCCCAGGAGCTCGCGGAGGTCGAGGCGGGAAGAGAAGGAGGTTGGGTTGGTGGTGGATGAGGCTGGAAAA CAGAGGAAGAGGAGGCACAGTGGAAGACCCAGAAAGGAAAAACTCAGCTTGGTCCCTTTTCAACCACCTTCAATTTCTTC GTCTCCTCCAAGTAAGGCTAATTCATTCAATTTCAACTTTCAACCATAGAAATTTAGCATTAGCTGCTATTTTTCTACTT TCAAACTAGTGAGGAGGGAATTGAGTAGTTAAGTAGTTTCATGAGATTCTAGGATAATGTTAGGATATATGAATATAGCT TTCATTTTCAATTTTAGTTGAAGCTAGTTATCAATTGATTTGGGTTACAAGTTTGTTATGTACCACTAGAGGTGGTTAAT TTGTTATGTAAACAATGTTTATATCATTGTCTGCCACAGCAACAGTGGCTATAACATATGGTTATGGTTGCATCAATCAC ATTTTCCTCTAATCTTCCACAATGTTAAGAATCATGATATATCTGCCATATTGACTTCAATAACAATTTAGAACTTGATT GTAAGTAAAAAGGAACATAGAATTTAGGGGTAATGCAAAAATTCTATCCCATGTCTAAAAAATCACCATTTAGATCATGT TACATTGTGTTTGGTTCCACCTACAAAGTCCCCTTAAGGCTGAAGCTACAATATCTAGCTTCTCATTTAACATGACTTGC TTAACTTGAATACTGACATCCACTTAGCGTGTGTTTGGATATTAGTTGAGTGTAACATGAACAGATTCCATCCTAATCCA TAAAAGGAGCTTTGTTCGCTTTTGTTTTGAAGTTCGTGCTAATGTCCATTTATACCGGTATCAAGGGATGTAAAAACATA ACCTTAGTCTTTAAATTGTAAAAAGCTGTTTGCATTGACTTTTGTAATTTTTAGGAAGTATAGATGAAATCTTTGTATGT TCCTATATGACTGCCATGTCTGCTGTAGCCTGTAGATTCAGGAGTCAACTCTGTTTTTTGTTGTTATATTTGTTTGTTTT CATCTTTTAATATAGAACCAGAGACTGATGTTTGTTACTTTGGTGTTTAGAATCTGAAGAAGAAACTGGAGGTGATTTAG ATCGTGTTGGACAATTCATTACTGATTTAATCATGTGGAGAGATGTGTCAAAATCAGCCTTTTGGTTTGGGTTTGGGTCT CTTTGTTTCTTGTCTTCTTTCTTCACTAAAGGAGTCAACTTCAGGTTTGTAACTGCTATCTCTTTTCATTAGTTTGGCTC TTCCTTCTGCTAGATAGTGAAAAGTTCTGAGATGTTCTCATTCTGGTTGTTTCAGCATCTTCTCTGCCTTATGTCAGTTG GCAATTCTCTTGTTGGCTTTTTCATTCTTCTCAAATTCAGTTTCTCAAAGGTACAATTTACTGTTATGCTATTCCAAGCT ATTCTAGTATTGGATTTGGATGTATTCAATGAGTTAACATTTGCTGCATCTGTTTATGTTCAGAGACCAGGCTGAGAAGG GTTATGCCAAGCTGAAAGAAGATGACATTTTACGTCTCACAAACTTGATTCTTCCTGCTTTCAATCTTGCAATTTCAAAA ACCAGAGAGCTGTTCTCAGGAGAACCATCCATTACCCTGAAAGTAAAACCCCCAACCAAAGTCTTGAATGCCTGATTGAT GTCTGCAAAGTTTCTTTCTAGTGTTTGTTAAGTACTAATTAGGATCCTTATTTTGCAGCTAGCTCCTTTCCTTCTACTAG GAGCTGAATATGGCTCTCTTATTACAATTTGGAGACTCAGTGCCATTGGTGAGTGAAGACCTCATGAACTATATAATGTT TTCCTCAAATTGAGTCAGCATCAGCATTATCATTGTTGTGATAATACATATTTTCCTAAATTTTCATATATTTATGAGCA GGATTTTTTGTCAGCTTCAGTGTACCAAAGCTTTATTCTTGCTACTCTGATCAGATCAACCAGCGAGGTATAATTCCACC CTTTCCCTAAAATTTTGTAGGCCTATCCACATTGTAATAACTAACAGTAGATTAGGTTTTGTTATGCAGCTAAGTGCTTG AAGCTGAGATTGTTGGATAGATGGAGCGCCTGCCCTCACAAGAAGATAGTGGTCGCATCAGCACTTATTGCCTTTTGGAA ATTATCTACTATAAAGACTCGAATCTTCACAGGTAATTCTGGAATCTGCCACTTGCCAAGAGGCACTTTTTCATGTAATT TTAAGGATGCATGACCATTTAAGGATCAAAAGCCTCCAAATATGGATTAACGGCTATATCTAATTTGGAATATCAAAACA ATCTTTACCTGAAGAGAGTTTTGCTTCTCTTCCATATTTCATTGGTCTCATGTGTTAACATGACTTGCTTAAATCCCTCC TCTGCAGGATTTATACTGCTTGTAATAGCCAGATATTGTCGGCAAAATGTCATGCAACAAGTAGAAGATGGAGAAGCACA ACTGGGAGAGAAGGGACAAAAATAGACATTGATGGTGGCATCAGAGGAAGAGCAACTGCAGCAGGCACTAGTAGTTGCAG AACAAGGGCGCCGACGCTAGAAACTTTCTTTATCCGGCCATTTCTTGAAACTTGGCACGCATATATATATGTATATCTTG CATCCATGGATGATTCATTCCTTTTCAATTAGGTGAATTATAAAAGATGTTCTTAAGCGTTCTATTATAGTCATAGCCTT GTTGCACAAGCTATTTTAAGTTAGTGCATAAAATGTATTCATTCATTCATTTTTTGACTCTGATCACGAGTATGTATCTT GGTCCTTTGTTTCAGATCCATTTATTTGTAGTTAGGTAAAAATATAAAATTGTATTAATTATGAACAAATGTTTTCATTA TATATGCAAAAAATCCTGTTGAGATCCAATTTAACATGAGTGTACAACTGAGATATTCAACGGTGACAAACTTTTCATTC TAAATTACATGTTCAATCAATGTGTAACATGTGGAGACTTTGATATTCAGCATTCAAACATCCTACTCAAGTGAAGACTT TGTGACGACCTGATCTTCATTGGACGACTTTGATTTTATTAGTTATTATGCACTTAAAATTAACCTATAGCGGTCTAATT AAGATC
CDS sequence (LotjaGi3g1v0451600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCCCATTCCAGCACCACTAGATTTAGAATGGCGCCTTTCTCCAACGGCTACAACACCCAAAAACAAATATGTCT GCATAACTCAACAGAATCTAGCATTCCAATCTTACCTCAATCTCATCACTCACTTGCATTCATGGATTCTTATTCTTCAC ATTCAGCTACCACCACCCCTCACCACCACCACCGTCACCACCACCGTTCTTCTGATCGGAGCAGATCTCGAACCTCTTCC ACCTTGGCTCGCATCGGTGAAAATGGAATTATAGAGCCTATTCGCATATCTCTCGACCTGGTTCCTTCACCAACCACCAT CAAACTCCCATCACCATCATTATCATCGCGTTCACCTCTCTCCCTTCTGCGTTCTCCTAACTCCTGTCTCCCACTCCGGG AGCTTCTCCTCATGTCTCCTTCTCCGGCGAGGAAGTCCAAGCCACGGTTCGACGATGAGCTCCTGGAGGCAGGTTCCGGT GTTCGCCGCCGGTGTAAGAGCCGAGGGGCGCAGATGGGGTTGCTCTGTTCGCCCAGGAGCTCGCGGAGGTCGAGGCGGGA AGAGAAGGAGGTTGGGTTGGTGGTGGATGAGGCTGGAAAACAGAGGAAGAGGAGGCACAGTGGAAGACCCAGAAAGGAAA AACTCAGCTTGGTCCCTTTTCAACCACCTTCAATTTCTTCGTCTCCTCCAAAATCTGAAGAAGAAACTGGAGGTGATTTA GATCGTGTTGGACAATTCATTACTGATTTAATCATGTGGAGAGATGTGTCAAAATCAGCCTTTTGGTTTGGGTTTGGGTC TCTTTGTTTCTTGTCTTCTTTCTTCACTAAAGGAGTCAACTTCAGCATCTTCTCTGCCTTATGTCAGTTGGCAATTCTCT TGTTGGCTTTTTCATTCTTCTCAAATTCAGTTTCTCAAAGAGACCAGGCTGAGAAGGGTTATGCCAAGCTGAAAGAAGAT GACATTTTACGTCTCACAAACTTGATTCTTCCTGCTTTCAATCTTGCAATTTCAAAAACCAGAGAGCTGTTCTCAGGAGA ACCATCCATTACCCTGAAACTAGCTCCTTTCCTTCTACTAGGAGCTGAATATGGCTCTCTTATTACAATTTGGAGACTCA GTGCCATTGGATTTTTTGTCAGCTTCAGTGTACCAAAGCTTTATTCTTGCTACTCTGATCAGATCAACCAGCGAGCTAAG TGCTTGAAGCTGAGATTGTTGGATAGATGGAGCGCCTGCCCTCACAAGAAGATAGTGGTCGCATCAGCACTTATTGCCTT TTGGAAATTATCTACTATAAAGACTCGAATCTTCACAGGATTTATACTGCTTGTAATAGCCAGATATTGTCGGCAAAATG TCATGCAACAAGTAGAAGATGGAGAAGCACAACTGGGAGAGAAGGGACAAAAATAG
Protein sequence (LotjaGi3g1v0451600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSHSSTTRFRMAPFSNGYNTQKQICLHNSTESSIPILPQSHHSLAFMDSYSSHSATTTPHHHHRHHHRSSDRSRSRTSS TLARIGENGIIEPIRISLDLVPSPTTIKLPSPSLSSRSPLSLLRSPNSCLPLRELLLMSPSPARKSKPRFDDELLEAGSG VRRRCKSRGAQMGLLCSPRSSRRSRREEKEVGLVVDEAGKQRKRRHSGRPRKEKLSLVPFQPPSISSSPPKSEEETGGDL DRVGQFITDLIMWRDVSKSAFWFGFGSLCFLSSFFTKGVNFSIFSALCQLAILLLAFSFFSNSVSQRDQAEKGYAKLKED DILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGAEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAK CLKLRLLDRWSACPHKKIVVASALIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 258 | 258 | - | – | |
| MobiDBLite | 53 | 80 | 28 | - | – | |
| MobiDBLite | 58 | 73 | 16 | - | – | |
| PANTHER | 66 | 467 | 402 | 2.8E-158 | – | |
| PANTHER | 66 | 467 | 402 | 2.8E-158 | – | |
| MobiDBLite | 172 | 239 | 68 | - | – | |
| MobiDBLite | 180 | 203 | 24 | - | – | |
| ProSiteProfiles | 247 | 397 | 151 | 14.012 | ||
| Pfam | 248 | 400 | 153 | 1.5E-30 | ||
| Phobius | 259 | 275 | 17 | - | – | |
| Phobius | 276 | 280 | 5 | - | – | |
| TMHMM | 278 | 300 | 23 | - | – | |
| Phobius | 281 | 300 | 20 | - | – | |
| Phobius | 301 | 320 | 20 | - | – | |
| Phobius | 321 | 337 | 17 | - | – | |
| Phobius | 338 | 356 | 19 | - | – | |
| TMHMM | 357 | 379 | 23 | - | – | |
| Phobius | 357 | 382 | 26 | - | – | |
| Phobius | 383 | 471 | 89 | - | – | |
| TMHMM | 424 | 446 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0451600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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