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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0453200 |
| Transcript ID | LotjaGi3g1v0453200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|I1LS39|I1LS39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0453200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86653210..86655129) extracted from Lotus japonicus Gifu genome v1.2.
AGCAACAAACACATGCACACATCTCTTAGAAATGGAAAACAAAAAGCACCCTCACCTTCTGGGAACTAATCAACCATCTT CAACGACTAAGGTTGAAAGAAGGGTCGTAGAAAAAAACAGAAGAAACCAGATGAAGATCCTTTATTCCAAACTCAACTCT CTTCTCCCTAACTATAACCCTAAGGTATAATCCCCCCCCCCCTCCTTTATTTTCTCCCTCATTGTTATTCATTCATGCAT GAACTCAAATCATAAGTTTTTCAAACTTTGAAAACATCTTGATTTAGAATTAATAGTGAAATTAATCTCTAAAAGATATA ATAACAAATTAACAATGACATCCTAAGTTTTTTTTCCAGCGATATGAAGTGTGTTTTTAGATTTTTGTTAAATTTAAGGC TGATTTACGTTGAGGTCAACACTCCAAAATCTTGCTTCTTAATTTATGTGTTGAGGTATATGAAATTAATTAGGTTTTAC TTTGGTGCAAACAGAGAAACAAACACACTGAAATTACATCCAAAGTTTGTATTTTGTCCCTCAAATTTATGTTTAAATTA GTGTATTGTTCAAAGGCATGTGTATATTTGATTATTTCTAGGTACTAATTTAACTATTTGCTATGATGATTTGATGTGGA TATAGGAAGCGGTGCCATTGCCTGACCAAGTAGATGAGGCCATCAACTACATCAAGAGCCTTGAGGAAAAGATGAAGATG GCTCAGGAGAAGAAAGAAAGCTTAGGTGGAAGGAATAAGAGATCCCGTGGTAGCTGTTCTAGTTCTATTGCTGCAACGGT GGTTTCAAAATCGCCACAACTTGAGGTTCACGAAACAGGTTCATCTTTAGAAGTTGTTCTTACATGTGGGTTGGACAACC AGTTCATTTTTTATGAAATCATCCGAATACTGCAAGAAGAGAACATTGATATCAGGAGTGCCAATTCCTCAATGGCTGGA GATTCAATGCTTCATGTGGTGCATGCTGAGGTATATATACATATGACAAAAAGAATGAAAATTGAAATTTAACTTCATAA GTTTTAACATGTTTGGATCAGCTTCTTTTTTCTCCGAATCAATTCTAAAACTCAAGCTAATTAGCTTCTTATAATTGATG TTGTCTTCATAATCAATTGTATAAGAGTTTTCAAACAATTACTAAACATGTACCAAGAAGGAGATAAATACAAAGTTTAA CTTGATGAAAGGTTTTCAATCAAAGTCTAAATTATGGGAATTCAATATCACGGAAAATTGTGGATACATGCAGCTGCTAA TATGCAGCTATGATCATGGTCATTGCAACTATAATTTTGGTTGTGGACTGTAATTGAAAACCATCATACATCAAAAAGAG AGAATCAGTTTTCATATATAACATCATTGATCTCACCTTTTGTTTTGAAGTAAGGTTAAACTTTCATTAATAGGCATCAG AGAATCATTGATCTCACCTTACATCTTCATCATGTGTACATTCTTCTTAATGTATACGTTTGGTGAGTAAATTAGGTCTT TGATATTCTCTTTATTTTTCTTATGGCTTTACATGCAGATTCCGCAGTCTTATCTTCATTTCGGAGCAACCAAAGTTAGT GAGAGATTGAAAAGGTTTGTGAATGGATCCTCAAGTGATATGGAAATACACCCTGAGCTGTGGGATTTTGAAATTGGTAC TGATATGTGGGGTTTCTAGCTAGATCTTAGTATCTTACCCTTTAGGGTTTGCCAAAAGTTTTGTAAAAGAAGCAGATCGA AAAGAACTTCATCTTATATATTATATATATAACAAATTTTAAGAGCAATTGGTGGTCTCTGATTTCCTTAACACAGAATG GCATGGACACAGATAATTTTTCTGTAGTCTTCCAGTAGATTTTGGAAGTATTTTGACCTAGCTAGAAATTAACTAAGAAG
CDS sequence (LotjaGi3g1v0453200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACAAAAAGCACCCTCACCTTCTGGGAACTAATCAACCATCTTCAACGACTAAGGTTGAAAGAAGGGTCGTAGA AAAAAACAGAAGAAACCAGATGAAGATCCTTTATTCCAAACTCAACTCTCTTCTCCCTAACTATAACCCTAAGGAAGCGG TGCCATTGCCTGACCAAGTAGATGAGGCCATCAACTACATCAAGAGCCTTGAGGAAAAGATGAAGATGGCTCAGGAGAAG AAAGAAAGCTTAGGTGGAAGGAATAAGAGATCCCGTGGTAGCTGTTCTAGTTCTATTGCTGCAACGGTGGTTTCAAAATC GCCACAACTTGAGGTTCACGAAACAGGTTCATCTTTAGAAGTTGTTCTTACATGTGGGTTGGACAACCAGTTCATTTTTT ATGAAATCATCCGAATACTGCAAGAAGAGAACATTGATATCAGGAGTGCCAATTCCTCAATGGCTGGAGATTCAATGCTT CATGTGGTGCATGCTGAGATTCCGCAGTCTTATCTTCATTTCGGAGCAACCAAAGTTAGTGAGAGATTGAAAAGGTTTGT GAATGGATCCTCAAGTGATATGGAAATACACCCTGAGCTGTGGGATTTTGAAATTGGTACTGATATGTGGGGTTTCTAG
Protein sequence (LotjaGi3g1v0453200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENKKHPHLLGTNQPSSTTKVERRVVEKNRRNQMKILYSKLNSLLPNYNPKEAVPLPDQVDEAINYIKSLEEKMKMAQEK KESLGGRNKRSRGSCSSSIAATVVSKSPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDIRSANSSMAGDSML HVVHAEIPQSYLHFGATKVSERLKRFVNGSSSDMEIHPELWDFEIGTDMWGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Gene3D | 12 | 99 | 88 | 7.9E-10 | ||
| PANTHER | 13 | 194 | 182 | 1.9E-85 | ||
| PANTHER | 13 | 194 | 182 | 1.9E-85 | – | |
| SUPERFAMILY | 17 | 88 | 72 | 1.27E-11 | ||
| ProSiteProfiles | 18 | 70 | 53 | 11.293 | ||
| CDD | 20 | 73 | 54 | 1.43398E-4 | ||
| Pfam | 21 | 71 | 51 | 1.7E-6 | ||
| Coils | 60 | 87 | 28 | - | – | |
| MobiDBLite | 77 | 100 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0453200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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