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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0457000 |
| Transcript ID | LotjaGi3g1v0457000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|B8EBJ1|RS8_SHEB2 30S ribosomal protein S8; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0457000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87059528..87061858) extracted from Lotus japonicus Gifu genome v1.2.
TAACTAAGATTGTTTTAAAGAAATTATGAAAGTAGTATTTGTCTTTCTGTTTGTTAGTTTTTGTGTACAAGGCTATGAAA TTGATGGAGGAAGAATACACAAACCAAAGAAAAATCAATTTCATAGATTACATGACCACCAAAGCACCCAGGTATTGCAC TCTTAACTTGTACTATCTAAAGTCTTTGATTTATTACTGACCTATTTAAATCACATGTTCTTAATAAATTCAGGGCTCAA TAGATGATGATTTTGATTGCATTGACATTTATAAGCAACCTGCTTTTCAACACCCTTTACTAAAAAATCACAAAATTCAG GTAATTATCCTTATTGTTTGAGCCATTCTTAATGTTTTCCATTCTTATGTAACTATCATCTGACCTTGCACGAGGAAATC ATTTTTTTGTATTAATTCTTGTATCTTTTATCTTTTTAGATTTAAATTGTAAATTTTGTATCTAATATCTTTTTCTCATT TTAACAAAGCTCTTTCCAACTTTTATGAGGAGTCGCATGCAAAATAGATCATCTTACCTTGGTAAAGCTATTAAAGATGA AAATTCCATGAGAGGATGCCGTTCCGGTAAAGTGCCCATTTTCAAGACCACAATGAGACAGAAGTTGAAAACTCATTCAT CTTCAAGATCCGAACTTGATAATTTTAATCAATATTCTAAAAGTTACCCTGGGCATCATGTAAGTCGATTAAATTTAAGT ATTTTGTTTTCAAACTTTTTATTTGATTGATTATTATTAAAATATTTATATAGAAAATCATTTTGGTTTAAAAAATATAG AAACATTACTTTATTTTTGTTACTATTCCCTATTTAAATTTTCATTATTATACTACCTAACATATATTTTCAATTAAAAA CACATTTAGTTATAAAAGAAGCAAATAAGCTGGTCTAATGTGTAATTATTCTGAATAATGCTGACTTCATAATTAATTAT ATTTTTATTATTAAATATTTTAAACTAATTATTACATATAAACATGTCTACTCATTTTGTCATATATTATCCTCCTCTAG TTTGCTACCCTAGATACAACCCAGGATATAACATTTCATGGAGCCAGTGCAAGAATTGGCACGTATAATTTATCGATTCA TGCAAACCAATATAGCATATGTGGATTTTGGATTCAAAGCGGTCCACCTGCAGAACTCAATAGTATACAAGTCGGAAGCG GTGTAAGTGACTTCTTATCTTGTTTATGATTTTTTTAGGTTTCATAATATAGTAAAAAATTTGAGAATAATGTTATAATT TAAATGATCCTATTTAATTTGTTGTTAATTTTTTCCTTTATTTCATTTATTCTATGTATTTTATTTCTAATTATAATAAC ATTATTATGCAAGATTCATCCTAGCTTGTATGGAGACCATCAAATACGTTTAACTGCATATTGGACAGTAAGACTTAAAA ATTAATGGATTGTATTTTCTTTCTTAATTACATAAAATGTTTATGCTTTTTTAAATAAATACACGCAGGCAGATGGCTAT CATAAAACTGGATGTTTTAATCATCTATGTCCAGGTTTTGTGCAAGTCCATTCACAATTTAGCTTAGGAGAAGTCTTAGA GCACAGCTCTGTCATTGGATCAGAACACAAATATTTATTGGATATACAAGTCAAACAGGTAACGTAACTTAAATATATAC GGTTGTACCAAATTGATAATCTATTGACCTACATGGGATTTAAAATCCTCTTAAATATATCTTTGGGAAATATCTTCATC TTTTAATTGCATCATTATTTGTAGGATAAATTCACAGGTCATTGGTGGTTGTTTGGTAGTCTTGATCAAATTCCAATTGG ATATTGGCCTAAACAAATATTTACTCACTTAAGTAAGGGTTCGTCTTTGATTAGATATGGTGGTGAAACATTTGCTCCGC CCAATACGATTAGTCCCCCAATGGGTAGTGGAAGATTGCCTCAAGAGTTATTCAAAAACTCGGGTTTCATTGCAGATCTA ATGATTGTGGATTCAAATTACAATGAAGTTGAAGTAAATTCCAAGTACATGAAGCCAAATTGTGACACAACATCTAATTG TTATGACGCGTTGTACCATGGTTATGAAGGACCTATTTATCGCCAAGCCTTTCTCTTTGGTGGGCCAGGTGGGCAATGCG GTATATAATTATATTCAAAACTTTATTTAATAAAAGGTTGTTTATTATAGATTTGGATTCTTTGAAGTTGGAACTTAGTA TGAATAACGATAAATATATATGTCCAGTTGAATAAAAGTTTGAAGAAGTTTATATTGATGTTAAAATCACATAATACATT TTCGTAAATCG
CDS sequence (LotjaGi3g1v0457000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGTAGTATTTGTCTTTCTGTTTGTTAGTTTTTGTGTACAAGGCTATGAAATTGATGGAGGAAGAATACACAAACC AAAGAAAAATCAATTTCATAGATTACATGACCACCAAAGCACCCAGGGCTCAATAGATGATGATTTTGATTGCATTGACA TTTATAAGCAACCTGCTTTTCAACACCCTTTACTAAAAAATCACAAAATTCAGCTCTTTCCAACTTTTATGAGGAGTCGC ATGCAAAATAGATCATCTTACCTTGGTAAAGCTATTAAAGATGAAAATTCCATGAGAGGATGCCGTTCCGGTAAAGTGCC CATTTTCAAGACCACAATGAGACAGAAGTTGAAAACTCATTCATCTTCAAGATCCGAACTTGATAATTTTAATCAATATT CTAAAAGTTACCCTGGGCATCATTTTGCTACCCTAGATACAACCCAGGATATAACATTTCATGGAGCCAGTGCAAGAATT GGCACGTATAATTTATCGATTCATGCAAACCAATATAGCATATGTGGATTTTGGATTCAAAGCGGTCCACCTGCAGAACT CAATAGTATACAAGTCGGAAGCGGTATTCATCCTAGCTTGTATGGAGACCATCAAATACGTTTAACTGCATATTGGACAG CAGATGGCTATCATAAAACTGGATGTTTTAATCATCTATGTCCAGGTTTTGTGCAAGTCCATTCACAATTTAGCTTAGGA GAAGTCTTAGAGCACAGCTCTGTCATTGGATCAGAACACAAATATTTATTGGATATACAAGTCAAACAGGATAAATTCAC AGGTCATTGGTGGTTGTTTGGTAGTCTTGATCAAATTCCAATTGGATATTGGCCTAAACAAATATTTACTCACTTAAGTA AGGGTTCGTCTTTGATTAGATATGGTGGTGAAACATTTGCTCCGCCCAATACGATTAGTCCCCCAATGGGTAGTGGAAGA TTGCCTCAAGAGTTATTCAAAAACTCGGGTTTCATTGCAGATCTAATGATTGTGGATTCAAATTACAATGAAGTTGAAGT AAATTCCAAGTACATGAAGCCAAATTGTGACACAACATCTAATTGTTATGACGCGTTGTACCATGGTTATGAAGGACCTA TTTATCGCCAAGCCTTTCTCTTTGGTGGGCCAGGTGGGCAATGCGGTATATAA
Protein sequence (LotjaGi3g1v0457000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVVFVFLFVSFCVQGYEIDGGRIHKPKKNQFHRLHDHQSTQGSIDDDFDCIDIYKQPAFQHPLLKNHKIQLFPTFMRSR MQNRSSYLGKAIKDENSMRGCRSGKVPIFKTTMRQKLKTHSSSRSELDNFNQYSKSYPGHHFATLDTTQDITFHGASARI GTYNLSIHANQYSICGFWIQSGPPAELNSIQVGSGIHPSLYGDHQIRLTAYWTADGYHKTGCFNHLCPGFVQVHSQFSLG EVLEHSSVIGSEHKYLLDIQVKQDKFTGHWWLFGSLDQIPIGYWPKQIFTHLSKGSSLIRYGGETFAPPNTISPPMGSGR LPQELFKNSGFIADLMIVDSNYNEVEVNSKYMKPNCDTTSNCYDALYHGYEGPIYRQAFLFGGPGGQCGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 12 | 10 | - | – | |
| Phobius | 13 | 16 | 4 | - | – | |
| Phobius | 17 | 390 | 374 | - | – | |
| PANTHER | 40 | 387 | 348 | 4.9E-119 | – | |
| PANTHER | 40 | 387 | 348 | 4.9E-119 | – | |
| Pfam | 47 | 144 | 98 | 1.3E-14 | ||
| Pfam | 162 | 384 | 223 | 1.4E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0457000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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