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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0457500 |
| Transcript ID | LotjaGi3g1v0457500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|A7GK01|SYC_BACCN Cysteine--tRNA ligase; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0457500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87143747..87147408) extracted from Lotus japonicus Gifu genome v1.2.
AACTAAGATTGTTTTAAAGAAATTATGAAAATAGTATTTCTCTTTCTGATTGTTAGTTTTTGTGTTCAAGGCTATGGAAT TGATGGACGAAGAATACACACACCAAAGAAACATCAAATTCATAGATTACATGACCCCCAAAACACCCAGGTATTGCACT CTTAACTTTTACTATCTAAAGTCTTTGATTTACTGCTAACTTATTTAAATCACATGTGCTTAATAAATGCAGGGTTCAAT AGATGATGATTTTGATTGCGTTGAAATTTACAAGCAACCTGCTTTTCAACACCCTTTACTAAAAAATCACAAAATTCAGG TAATTATCCTTATTGTTTGAGCCATTCTTAATGTTTTTCATTCTTTTGTAACCATCATCTGACCGTGCACGAGGAAATCA TTTTTTGTATTAACTCTATTAATTTTTTGTATCTTTTATCTTTTTAGATTTAAATTGTAAATTTTGTATCTAATATCCTT TTCTCATTTTAACAAAGCTTTTTCCAACTTTTATGAGGACTCGGATGCAAAATATATCATCTTACCTTGTTAAAGCTATT AAAGATGAAGATTCCATCAGAGGATGTCGTCCCGGTAAAGTGCCCATTTTCAAGACCACAATGAAACAGAAGTTGAAAAC TCATTCATCTTCAAAATCCGAACTTGATAATTTTAATCAATATTCTAAAAGTTACCCTGGGCATCATGTAAGTCGATTAA ATTTAAGTTTTTTTTTTTCAAACTTTTTTTTTGATTGATTATTATTAAAATATTTATATAGAAAATCATTTTGGTTTAAA AAAATATAGAAACATTACTTTATTTTTATTTACTCTTTCCTATTTAAATTTTCACTATTATACTACCTAACTTATATTTT TAATTAAAAACATATTTGTTTATAAAAGAAGCAAATAAGCTAGTCTAATGTGTAATTTATTGTCAAGAATGCTGACTTCA TAATTAATTATATTTTCATTATTGAATCTTTTAAACTAATTATTACATATAAACATGTATACTCATTTTCTCATATCTTA TCCTCCTCTAGTTTGCTACCCTAGATACAACCCAAGATGTAACATTTCATGGAGCAAGTGCAACTATTGGCTTCTATAAT TTATCGCTTCATGCAAACCAATATAGCATATCTGGATTTTGGATTCAAAGCGGTCCACCTGCAGAACTCAATAGTATACA AGTCGGATGCGATGTAAGTGACTTCTTATCTTGTTTATGATTTTTTTAGGTTTCATAACATTGTAAAAAAATTGAGAATA ATGTTATAATTTAAATGACCCTATTTAATTTGTTGTTAATTTTTTTCCTTTAATTTATCTATTCTATGTATTTTATTTCT AATTATAATAACGTTATGGTGCAAGATTCATCCTAGCTTATATGGAGACCATCAAATACGTTTAACTGCACATTGGACAG TAAGACTTATAAATTAATGGATTGTATTTTCTTTCTTAATTACATAATATGTTTATACTTATTTAAATAAATACACGCAG GCAGATGGCTATCATAAAACTGGATGTTTTAATCATCTATGTCCAGGTTTTGTGCAAGTCCATCCCGGAACTGGCTTAGG ATTTGTCTTACACTACAGCTCTGTCATTGGAATGGAAGAAAAATATTTATATGATATAAAAGTCAAACAGGTAACATAAT TTTTATATATATGCCTGAACCAAATTGATAATCTATTCACCTACATGAGATTTAAAATCCTCTTATCATTGTTGTAACAA AAAGCATTTACGTTTACTTTGTTAAGATGACATTTTTACAACTTATAATCATAAAACCAATTTATAGAAAATATTATTGA ATGATTACTTTAATGAAGAAAGATAAATATACATAGTTAAAATATTCTGACTAAATAAAAAAATATAAAATATAAAAAAT TGGGATATTTCAAGTGAAGAATTTTTTTTAATATAAATGTTTATATGGAAGTGTTTTCATACAACAATTTTGCAAAAAAT ATTATCAAAGTAAAGTTTTTAGTAGTGGAGTGCTGGTTTATGTGGAAGAAGCACTTGTAAGGGTGAGCTCTAGCCTCTTA TTTTTGTGTTGGATAGTGACTTTAAGGGTAGATTTTTTGTTTATTATACATAGAGTTGTCTACTTTGTATGTGGGTTGTT TGGTTCATTGAGAATGTTTGTTTCTCAATATTGATAATCTTAATGAAGACTTTCTTTTATTTTAAAAATAAAACATTATC AAAGTTATAAATCTAACTATTTTTTTTATATCTAACACTTATATTCAATTTAAACAATAAATAACTAATGAAGCTCAATC CTGATTCAACTTTTCATTTATCTTAAAATTATATTTGTTGCATAATATTTTATTTAGAAGAATGCATTATATTTACATTT CATATTTAATTTGACAAATAGATAATTTGAAATTTTTTAAAAAATAGTAAATGAAACTAATTTTCCTATATAAAGGACAA AAGTTTTTTTTCTTGAATTTTAGATTGTAGTTTACTAAGTTTCTTTATAGTGAAAAATGAGTGATATTGTTTATTGAAAT GCATTAATATGTATAATTTTATATGGTAAAATGATATTTATTCAATTTTTAATGTGTTTACGTTCATATCTTATGGTTAT GCTTTCCTTTTAATTTTTCAGTATGAGCACCAAATTTCAAAGTTACATGTATCAGCTGTAATGTAGGTTAGAAATTAGAA TTCATAACTTTAGACAATATAGTTACCTAAAATATATTGTTGGATGATTAACATGGTGTTACCCGTAATATATTGTTGGA CAATTTACTGGTAAATGAGATTGTTTCCTTGAATAGACTATTCACTAATAGGTGGAATTGTTGAAACTTCAAATTATATA TTTTTAATTAATTAAAACTATAAATAATTGATTTAAATGTCTATGGGAACTTAAAGAATGAAAAAATAGTAAATAAACCA ACATATGAAATATCTTGAAACAATGATAAATAAAAAAATGTATTGGTAATTTATATTATGAGGTGATTTATTCTCTATAA TTTTTATGCCATCTTTAGATATTAGTTTTTTTAAAAGTAATGTCATTCTTAGAAAACTTATATCTTCATCTTTTAATTGC ATCATTATTTGTAGGATAAATTCACAGGTCATTGGTGGTTGTTTGGTAGTGTTGATCAAATTCCAGTTGGATATTGGCCT AAACAAATATTTACTCACTTAAGCAAGGGTTCATCTTTGATTAGATATGGTGGTGAAACATTTGCTTCACCCAATACGAT TAGTCCCCCAATGGGTAGTGGAAGATTGCCTCAAGAGTTATTCAAAAACTCGGGTTTCATTGCAGATCTAATGATTGTGG ATTCAAATTACAATGAAGTTGAAGTAAATTCTAAGTACATGAAATCAAATTGTGACACAACATCTAAATGTTATGACGTG TTGTACCATGGTTATGAAGGACCTATTTATCGGCAAGCCTTTCTCTTTGGTGGGCCAGGTGGGCAGTGCGGTATATGATT ATATTCAAAACTTTATTTAATGAAAGGTCGTTCATTATTGATTTGGATTCTTGGAAGTTGGAACTTAGTATGAATAAAAA TAAATATATATGTTCAATTGAATAAAAGTTTGAGGAAGTCTATATTGATGTTGAAATCACAT
CDS sequence (LotjaGi3g1v0457500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATAGTATTTCTCTTTCTGATTGTTAGTTTTTGTGTTCAAGGCTATGGAATTGATGGACGAAGAATACACACACC AAAGAAACATCAAATTCATAGATTACATGACCCCCAAAACACCCAGGGTTCAATAGATGATGATTTTGATTGCGTTGAAA TTTACAAGCAACCTGCTTTTCAACACCCTTTACTAAAAAATCACAAAATTCAGCTTTTTCCAACTTTTATGAGGACTCGG ATGCAAAATATATCATCTTACCTTGTTAAAGCTATTAAAGATGAAGATTCCATCAGAGGATGTCGTCCCGGTAAAGTGCC CATTTTCAAGACCACAATGAAACAGAAGTTGAAAACTCATTCATCTTCAAAATCCGAACTTGATAATTTTAATCAATATT CTAAAAGTTACCCTGGGCATCATTTTGCTACCCTAGATACAACCCAAGATGTAACATTTCATGGAGCAAGTGCAACTATT GGCTTCTATAATTTATCGCTTCATGCAAACCAATATAGCATATCTGGATTTTGGATTCAAAGCGGTCCACCTGCAGAACT CAATAGTATACAAGTCGGATGCGATATTCATCCTAGCTTATATGGAGACCATCAAATACGTTTAACTGCACATTGGACAG CAGATGGCTATCATAAAACTGGATGTTTTAATCATCTATGTCCAGGTTTTGTGCAAGTCCATCCCGGAACTGGCTTAGGA TTTGTCTTACACTACAGCTCTGTCATTGGAATGGAAGAAAAATATTTATATGATATAAAAGTCAAACAGGATAAATTCAC AGGTCATTGGTGGTTGTTTGGTAGTGTTGATCAAATTCCAGTTGGATATTGGCCTAAACAAATATTTACTCACTTAAGCA AGGGTTCATCTTTGATTAGATATGGTGGTGAAACATTTGCTTCACCCAATACGATTAGTCCCCCAATGGGTAGTGGAAGA TTGCCTCAAGAGTTATTCAAAAACTCGGGTTTCATTGCAGATCTAATGATTGTGGATTCAAATTACAATGAAGTTGAAGT AAATTCTAAGTACATGAAATCAAATTGTGACACAACATCTAAATGTTATGACGTGTTGTACCATGGTTATGAAGGACCTA TTTATCGGCAAGCCTTTCTCTTTGGTGGGCCAGGTGGGCAGTGCGGTATATGA
Protein sequence (LotjaGi3g1v0457500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIVFLFLIVSFCVQGYGIDGRRIHTPKKHQIHRLHDPQNTQGSIDDDFDCVEIYKQPAFQHPLLKNHKIQLFPTFMRTR MQNISSYLVKAIKDEDSIRGCRPGKVPIFKTTMKQKLKTHSSSKSELDNFNQYSKSYPGHHFATLDTTQDVTFHGASATI GFYNLSLHANQYSISGFWIQSGPPAELNSIQVGCDIHPSLYGDHQIRLTAHWTADGYHKTGCFNHLCPGFVQVHPGTGLG FVLHYSSVIGMEEKYLYDIKVKQDKFTGHWWLFGSVDQIPVGYWPKQIFTHLSKGSSLIRYGGETFASPNTISPPMGSGR LPQELFKNSGFIADLMIVDSNYNEVEVNSKYMKSNCDTTSKCYDVLYHGYEGPIYRQAFLFGGPGGQCGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 390 | 372 | - | – | |
| PANTHER | 42 | 387 | 346 | 6.0E-116 | – | |
| PANTHER | 42 | 387 | 346 | 6.0E-116 | – | |
| Pfam | 47 | 144 | 98 | 1.6E-13 | ||
| Pfam | 162 | 384 | 223 | 1.8E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0457500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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