Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0459800 |
| Transcript ID | LotjaGi3g1v0459800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G28100.1 transmembrane protein; Swiss-Prot: sp|Q9SUC9|UGPI7_ARATH Uncharacterized GPI-anchored protein At4g28100; TrEMBL-Plants: tr|A0A0L9V618|A0A0L9V618_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0459800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87449219..87451541) extracted from Lotus japonicus Gifu genome v1.2.
AATCACTGAGAAAGCAATCTTACCAGTTACCAAGCCAGTCCCTCAGTCTGTTGATTACTTGATATAAGCACCATGCCATG GTCTGCAGTCAAATCAAAGGGAGGGTCTATGAAACGTAACCAGGAACCAAAAACCACCTCCTTCAATCTTCTTCTACTTT AATTTTGAATATCTCTCGAATACCCTCACACACTACCTTTTCCTTCTATAATTCCCAAGAAACCTAAACTCACTTTCTCC TATAATCATAAACAAACAAAACCCTCTTCCTTTTTCAACCCCATCCCCATCTCTTTCTCCACCACCCAAATCATTTCATT TCATTTCACCCTTTTTCTCTTCTCTCACACAACCCTTCACCTTTCCCTTGACCCTTTATTTCTTCTAAACATAAAAATGC AATCATTCACTTCCATTCTCACTTTCTTCTCTTCACCACTTCTCTTCCTCCTGCTACTCCTGCTCCTACCACCACCACAC TTTTCACATGCCGGTTTACTCTCCCAACCGGTCGAACCAGGCGACTACCCTTCCCCCAACACAGTCCCCGCATTCCCGGT CCAAACCCAAGCTCAAACCTGCCGCCTCGACCTCTCCGACGAGCTCTTCGGCGGCGTCAAAGCCGCCTGCGGGAAGAATC TCGACCGAAGCCGCTGCTGCCCCGTCCTCGCAGCATGGCTGTTCGCCGCACACGCACGCTCAGCTCTAGAAATCACCGCC GACGCTCCAGCGCCGGCGGCCTCCGGCGACCTCCCGATGATGCCAGACGACTCACAGAAATGCGTTAACTCGCTGCAAGA CTCGCTTCTCAGCCGCAACATCCGGATCCCTCAGCCCAACGCTACATGCGACGCGATTCTCTGCTTCTGCGGCATCCGGC TCCACCAGATTAGCTCGCTATCTTGCCCTGCCGCGTTTAACGTTTCCACCACCCACCGGAACGCCACCCCAACCGCCGCC GTTCACAACCTGGAAAAAAACTGTCGTAATGCTTCCTACGCTGGTTGCACCAAATGCCTCAGTGCCCTACAAAAGGTTCA AATTAAACTCACACATTTCAAAAATATTTCAAAATTTCACTATCATCATTATCATCATGATTTTCATTTGGTTTCTATAT TTGAGTTAGGGTTCATGTTCATAAATGTGAATCGGATCTTTTTGCCGTTTTTACTCAAAACGACCAATTCAATTCAGGTT GACCTTCGAAAACGACTTCCCATGCGCATTTGCTAATTATTGCTATTTAATTCGCTCAAACCTTGTGTTTGTTTAAATGA GGAAGTGACCTTTCATATAGATTCAGCCTTTATCGCTTTGATTCGTATTTTAATTAATTTGTTTTTTTTTTTTTGGGCAG GTGAAGGGTTTTAAGAATGAGACTAGGGTGAAAGGAGGGAGTGATAGAGCGAAGAAGATGTTCAGCCGTGATTGCCAGCT GATGGGTCTGACGTGGTTGCTAGCGAAGAACAAAACGGCGTACATACCCACCGTTTCGGCGGTGCTGCGTGCAATGATGT ACAGTGCGCACCCGCATGAGTCCAAGTGTAGTCCTGACCAAGAGAACATGCCGCTAGCCGTTGATTCTCTTCAGTTCGAG AGTGGCATTGCGACATCGTGGCCGTCCAATTTTTGGGTTACGCTTTTGCCCTTAATCATTCTGCTATCTCTTGTTTGAAA AAGGGTCCGGTTCAGTTGAATTGGTAGCTTCCCACTCTCTCTCTGTATCTTTTTCTTCTCAGTGTCCTTTTTCTTGGACG TTTTTGTCACGGGAAGTTAAGCTACCAGACAAAATCAGCAATCGGGGATAGGATATGCATATGCATATGTTTCTAAATTC TAACCCTTTTAGTTTTTATTTTTTGGTGATGTAAATTTCAGATCATGAATTAAACTATTAATCTCTATTTACTCTCATTT TACATAGAAGGAAAAAAAGCATTTTCCGAGTTTCTAACATGCTTGTTGGTTGTTGCTAGTTTCAGACCTATAGTGAATGA TTTGTAGTAATATTTTGTAAGAATCTTGTAGGTCCGTGACTAATCCTAGCTCCTAAACCAATGTTGTATTGTAATGATAA ACTATTGTATCAGCTTTGGTGGCCACAATGTTGGACCACTCAAGTAGGAGCAGCTCCCTATGACTGAGTATGTTGGTCGA TTTAGCTAAATTTAGACTCAAAACACTAGTTTACAATTTTCAATGGGGGTGCAGTCTGAATTGAAATCCGAGTTTTTATT ATATTAACAAAATATATTATAATTTTGTCTAAACTACAAATTCATGGCATAGGTTCGATTCAATTGCGGAGAATATTTGG TTG
CDS sequence (LotjaGi3g1v0459800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCATTCACTTCCATTCTCACTTTCTTCTCTTCACCACTTCTCTTCCTCCTGCTACTCCTGCTCCTACCACCACC ACACTTTTCACATGCCGGTTTACTCTCCCAACCGGTCGAACCAGGCGACTACCCTTCCCCCAACACAGTCCCCGCATTCC CGGTCCAAACCCAAGCTCAAACCTGCCGCCTCGACCTCTCCGACGAGCTCTTCGGCGGCGTCAAAGCCGCCTGCGGGAAG AATCTCGACCGAAGCCGCTGCTGCCCCGTCCTCGCAGCATGGCTGTTCGCCGCACACGCACGCTCAGCTCTAGAAATCAC CGCCGACGCTCCAGCGCCGGCGGCCTCCGGCGACCTCCCGATGATGCCAGACGACTCACAGAAATGCGTTAACTCGCTGC AAGACTCGCTTCTCAGCCGCAACATCCGGATCCCTCAGCCCAACGCTACATGCGACGCGATTCTCTGCTTCTGCGGCATC CGGCTCCACCAGATTAGCTCGCTATCTTGCCCTGCCGCGTTTAACGTTTCCACCACCCACCGGAACGCCACCCCAACCGC CGCCGTTCACAACCTGGAAAAAAACTGTCGTAATGCTTCCTACGCTGGTTGCACCAAATGCCTCAGTGCCCTACAAAAGG TGAAGGGTTTTAAGAATGAGACTAGGGTGAAAGGAGGGAGTGATAGAGCGAAGAAGATGTTCAGCCGTGATTGCCAGCTG ATGGGTCTGACGTGGTTGCTAGCGAAGAACAAAACGGCGTACATACCCACCGTTTCGGCGGTGCTGCGTGCAATGATGTA CAGTGCGCACCCGCATGAGTCCAAGTGTAGTCCTGACCAAGAGAACATGCCGCTAGCCGTTGATTCTCTTCAGTTCGAGA GTGGCATTGCGACATCGTGGCCGTCCAATTTTTGGGTTACGCTTTTGCCCTTAATCATTCTGCTATCTCTTGTTTGA
Protein sequence (LotjaGi3g1v0459800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSFTSILTFFSSPLLFLLLLLLLPPPHFSHAGLLSQPVEPGDYPSPNTVPAFPVQTQAQTCRLDLSDELFGGVKAACGK NLDRSRCCPVLAAWLFAAHARSALEITADAPAPAASGDLPMMPDDSQKCVNSLQDSLLSRNIRIPQPNATCDAILCFCGI RLHQISSLSCPAAFNVSTTHRNATPTAAVHNLEKNCRNASYAGCTKCLSALQKVKGFKNETRVKGGSDRAKKMFSRDCQL MGLTWLLAKNKTAYIPTVSAVLRAMMYSAHPHESKCSPDQENMPLAVDSLQFESGIATSWPSNFWVTLLPLIILLSLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 318 | 286 | - | – | |
| PANTHER | 36 | 315 | 280 | 3.1E-159 | – | |
| PANTHER | 36 | 315 | 280 | 3.1E-159 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0459800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…