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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0462200 |
Transcript ID | LotjaGi3g1v0462200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transmembrane protein, putative; TAIR: AT3G09280.1 transmembrane protein; Swiss-Prot: sp|P55487|Y4ID_SINFN Uncharacterized monooxygenase y4iD; TrEMBL-Plants: tr|I1M401|I1M401_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87728877..87733050) extracted from Lotus japonicus Gifu genome v1.2.
AAATTGATTTTAGATGACAGCCAGAAATTTCTCTCTTAATTTCAAAACAGATGATAGTTTATTATGCAAGAGGGATCCTC TTTCATAGGACAAGATTGATGAACCTCCACTCCACCAGAGTTTTCATTCCAGCCACACTCTCAACCACAAAAGATCACAG CCATACATTCCTCTCTATTAGAAGATTTTTTGTGAACTAACCTTTCCCATCTATTTAAATCCCCTCCACCCCACCCCATG TGGTTTCCATAATCAGAATGTAACCTAGTACAGTAGTACTATATATTCAATTTGGATTAGCTTTGCTTAACACTCGTTTT TCTGTACTCTAAAACACTGAATCTCAGTTCTTCAAAGCAGCTAAGTTTTAACACAAACTTCCAAAACTAATTGAATCATA CACACATATTCGTTCAGAATGAGCAAGCTTGGTTTGGTTGTTCTGCTACTAGCTCTGCTCTTAACAATTCTTCAAGCCAT GGCCCATGAATCTGAAGCACAGGCACCACTCCAAGGATTAAACTTAAATCTTTTGGAGCATAAAACTCAAACAAGTGTTC CCAAGAATGATAAAGTTGCAGAACATCCTGCAGGAGCTACAAAAGCAGCTGCTGAGGCTCCAAGGATTCGAAGGCTGGGA ATTAAGCACCATTCAATAGACAAGTCAGAGGCTGGTGGGGGTGTCATCATTGGTGGATTTGTTACTGCTATATTTGCTGC TGTTTTTGCCTACATTCGTGTTACCAGGAAAAGGGTCAGCGGTTAGTGGTTAGTGATATTAATTCTCTAATATCTAGTTC AGTTAGGGTAGGAATTAAATTATAGTGTGTGATGTTGAAATATATAAAAAAATTGTCAAATTGATTAAAATTGCAGCAAC AGATAATTTGTAATTGTGTTATCATATATTGGTAATATAAGAACACCCTCAGGCTCAGCATATGGAAAGGAAAAGGGGCA AGTCAGGATATCCACACTCAATTCTTCTCTTATATTAATCATTTATCTCTCTTATCTTTTTTTCATCTATTCTCTATCTG TGTGTCTACACTCAAAATGAATTTGTTTTGTATCGGGAAATAACATGTGACCACGTGAAAGAAAAATACACATCATGATG AAACTAACTTTCCCAGCAAAAATTTAGTAAATGTCTTACTAATTTTTAAAGCTTTGGCACAATATTATTACTAATTTATA AAAATTATATATATTGAAAAAATATCAATCTCAGACTATATATATATATATATATTATATTGAAAGAAGAGGTCCCACAA ATATCAATTCATGGTTAAAATTATTTTTGTTGCAATTTTCTCACAATTAATTTTTGAACTTTTAATTCTATTTAATATTC ATATTTATAATAATATTATGTTATATTTTCTATGATTTCTTGCCCCCACGACAAGAAATTCATGTATCCGGCACTGTAAA TAATCATTAAATTGATTCTATATCAATAAGATTAATTTAAAAAAGTTATCAATAATTCAAACTTTGTAATTGTTCATATA TTTCCATATAATTTTTATATCCAAAATGTTAAGGCACTCTGCATTGTACATGAAATTAAACTTGCTAGTTATAAAAATAA TTAAGCTCTAAAAAAATTAACTCTATTTTTTATTTTGAGAAGAGTATATGTGTCCGAGTCTTTAGAGTGTTATTCAGGTT TTGTGATAACAGAACGTCTTTCAAATCTGATTAGCCGTGTTTAGTTTTGAAAGTTTCTCTTCCAATTCCAAATCTAACGA ACAAAATACAAACACACACACACTTACACAAAACAAACAGAAGAAATCTCACATAGCTAGCTAAAGAACAAGCAAGAGAG GATTAGATTATCACAATTCACAATGGAAACAAGATCAGCAAAACGCAAGAAAATGGCTCAAATCATGGAGAACGAAGCGA AAGCCGCCGCCACGGATCGGATCAGCGACCTCCCAGACGCCGTCCTCCACCACATTCTCTCCCTCCTCCCGATCAAAACC GCCGCCCAGACGAGCATTCTCTCCAAGAGATGGAAGTTTCTATGGACCACATTCCCCGATCTCGACTTCAGAACCATCGA TCCACATGCATTCTCCTCTCGAAATCTGCAATCATCAGATTTCGAAACGTCAGGTCACCCATTAGCTTCAACCATGGATT TCATCACACAAGTACTCTCGACGCGCGACAAGGACTCGGACATTAGGGCTCTTTGCTTCCGCGCCCGGTTAAGCTTTTCG CGGTTGAATAGCTTAATCCGGAGCGCGGTAAGGCACAATGTGAAAGAGCTTGACATCGAAGTCACACCAGAAGTGCGAAC AGATGAGTATTTCAATTTTCCAAGATGCTTAATTGCGAGTAAAACTTTGAGGGTTTTGAAATTGAGATCAGGTTTTCGGT TACCTCCTTCATCAATCATGAAAGAAACGTTTCAATCTCTTCACACATTGTCATTGACATTAGGCCCGGTGGATCATCAG GCTCCTTTATCTGATTTGTTTACTGAATCCGCTTTTCCTTTTCTGAGGAACTTGCACCTGCAATTGTGTTTTGGATTGCG AGTTCTTCGCGTTGGTTGTCTCGCTCTTCGTGATTTGAGCTTGGAGAAATGTATTAACCTTCACGGTTTGGATGTTGTCA CGCCAAAACTCGAGAGGTTGAGAGTGTCAGAGTGTTTTCACGGGTACCATAATAAGAGTTGGGTGAGGATCAATGCACCG AAGCTTGAGTCGTTGTTTTGGCAGTATAATGCAGTTGCTGATGTTACTGTTTTTGAGCGTTCGAATGTGTTGCATGAGGC TTCCGTTGATTTCGTTTTGGTGATGAGTAAGAATGATAAAGTTAGCATGGATAAGCTTCAAAGTGCCATAAATTTCATGG CTGGATTGTCTTGTGCCCGTTCGTTGACACTTGATAGCAAAACTATAGAGGTAATAAAGTTTGTGCTCTCTTGCATTATG GGTGCATGGGTCCGGTTGCCAATCAAAATGATAATGTTTGATAATGGATTAATGGTTGACATATGCTTTTTTTAGCATAT TTTCTTACACATTCCCAATAATCACTCAACTCATTATGGAGTTTGTGTATATTTAGTTATATAATGGATGAAATAACGAT GCACAGCTCCAAGTATGGCTATCAGTCCCAAGTTTAAGCTAATTACTCGTAAGGTTATGTAGTCCACCTATAGCCCAACC TGAACTGGCCAAAAGACTGGGGTGCGTTAACTTTCGGTCAATATTATCGGATGGGGATATTCTACTAGAAAACGTTGATT AAAAGAAATTTGTTTTTATTTACTGTGATTTCAACTTACCGTGATTTTTTAATGTGAATTCAAACATGCATTCATTCATG TTGATATACATGATATTATATCCTGGTCAATCTCATGTATTTCTCTTTTTCAGCTTCAAAAGAGAATTACAAGCATGTGC TCCTCTCCTTGGCTGCAGATGCTATCAAATAGCAACTTCTATATTGAGCCATTATATAATCTTAAATCATTAGAGCTGCA TACTTGTTTCAACAAAACTAATATTCAGGGATTGGCATGCTTATTCAGGAGCTCTCCCACCCTCCACACACTCATTGTCA AGATCATTGACCATAATAAGTTTGATAGAAAAGTAAGTCATGTCATAAGTTATTTATTACTATATTTTTATGCATGTTTC ATATGAAGCACACATCATATATATTATTGTTGATTTCCTTTTCATCTGCTGCAGCAGTGGAATAAGGACTTGGACATGAC TAGCAATGAAGAAGAGCAGTATTGGGAGTCTGAGATCCCAACTCTGAAGCCTTTTCTGCAACACTTGAAGGTGGTTGAAA TTCATGGGTTTCTTGATTGTGAGAATGAAGTTACACTAGCAAAGTTTCTCCTCAAGAATGGGAAGGCCTTAGAAGAGATG GTATATTTCACAGGACATTGTAATACAAGTAGTACTCTTAGGCGACAAAAAGTAAGGCAGCATATGTTGATGGGTGTTTC TTGGGCTTCTTCTAATGCAAAAGTGACGTTTCGGTAGCCTTGTCACATTGTTGCTTATTCTAGGGAGGGAGGGTAGTGAG GATGGTTTCAAGGGGAAATACTTTTCCAATAATGAGAAGTTGTATTTGGAGTTACAGTCATTACTTATTTATTTTGACGA GAAGTATTTTTGGC
CDS sequence (LotjaGi3g1v0462200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAGCTTGGTTTGGTTGTTCTGCTACTAGCTCTGCTCTTAACAATTCTTCAAGCCATGGCCCATGAATCTGAAGC ACAGGCACCACTCCAAGGATTAAACTTAAATCTTTTGGAGCATAAAACTCAAACAAGTGTTCCCAAGAATGATAAAGTTG CAGAACATCCTGCAGGAGCTACAAAAGCAGCTGCTGAGGCTCCAAGGATTCGAAGGCTGGGAATTAAGCACCATTCAATA GACAAGTCAGAGGCTGGTGGGGGTGTCATCATTGGTGGATTTGTTACTGCTATATTTGCTGCTGTTTTTGCCTACATTCG TGTTACCAGGAAAAGGGTCAGCGGTTAG
Protein sequence (LotjaGi3g1v0462200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLGLVVLLLALLLTILQAMAHESEAQAPLQGLNLNLLEHKTQTSVPKNDKVAEHPAGATKAAAEAPRIRRLGIKHHSI DKSEAGGGVIIGGFVTAIFAAVFAYIRVTRKRVSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 112 | 112 | 3.3E-31 | – | |
SignalP_EUK | 1 | 22 | 22 | - | – | |
PANTHER | 1 | 112 | 112 | 3.3E-31 | – | |
SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
Phobius | 1 | 3 | 3 | - | – | |
Phobius | 1 | 27 | 27 | - | – | |
SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
Phobius | 4 | 15 | 12 | - | – | |
TMHMM | 5 | 22 | 18 | - | – | |
Phobius | 16 | 27 | 12 | - | – | |
Phobius | 28 | 84 | 57 | - | – | |
Phobius | 85 | 106 | 22 | - | – | |
TMHMM | 86 | 108 | 23 | - | – | |
Phobius | 107 | 115 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0462200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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