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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0462500 |
| Transcript ID | LotjaGi3g1v0462500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF1218); TAIR: AT2G32280.1 GPI inositol-deacylase C, putative (DUF1218); Swiss-Prot: sp|Q46JW9|PCBD_PROMT Divinyl chlorophyll a/b light-harvesting protein PcbD; TrEMBL-Plants: tr|I1LRU0|I1LRU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87742916..87750152) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGCTTTGCTTTGATATTCCACCTCCTACCATTCTCTTTCACTATACTTTTTTAATCATTATATATTGTAATTCCTAT ATATATACCCCCCACTACATCTATTTCCCTACTGTTGCTGACCTTAGTAACAAGAGAGCCAGAGCAGAGAAAAAACAAAG AATTTCAATTTCTCCTACAAATGGCTAGAGTGGTAGGCATTTTTCTGTGCCTCCTGATTATAATCATGGATGTTGCAGCT GGGATTCTTGCCTTCCAAGCTGAAATAGCACAAAACAAGGTATGCTTGAAGCTGGCACTATTTTTTAGGTGCATTTACTA AATGTGTGTCAGAACAGCTATAGTATACTGAGATCTATGTTAAACTACGATGTTTGTTTTGAACAAACAGGTCAAGCATT TAAGACTGTGGATATTTGAGTGTAGAGAACCAAGTCATCAAGCCTTCATGCTGGGTTTGGGTGCAGCAGTGCTTTTAGGA CTAGCCCATGCTATTGCCAATTTGCTAGGTGGCTGCAGTTGCATTTGTTCTCAACAAGAGTTTGAGAAAGCTGCCCCCAG TAGGCAACTCTCAGTGGCTTGCCTTATTTTAACTTGGTAATGTACTTGCATCAGCTTATTTTTCTTGAGAATCAATTCAA ACACTCATAAATTATTTAGTGCATGTTTGGATACACGGTGAAAAACCATAGTGAAATCAAAATCACGATATCCAAACATG CACTTGCAAAATCTTCTCCTTGGAATTGACTTTGGCTACAGAATCAACAGTATCAATCGTAGAATCATTTTTTTTTACTT TACTCATTTTGATTGTGTTGTTGATCAGGGTCCTGTTGGCCGTTGGATTGTCCATGCTAGTGATAGGGGCTTTGTCAAAC AACAGATCAGACGGTTCCTGTGGTTTATCACACCATCACTTCCTGTCCATTGGTGGGATTTCATGTTTTGTTCATGGCCT ATTCTGTGTTGCATATTACGTTTCTGCCACTTCCTCCATGGATTAGTGAGTTAGATAATGATCTTTAACATCATTCCTAC TGTAGTGCTTTTGGAATTTGGCTTTTCTAAATGTTGCTTTACAAAATGTGTCTGAGACTTTCATGCTTCTTGTACTTAAA AGGGGAGACATGGAACCTTGTTTTTGGATGATTAAACTACTCTCTCCAGTGACTTGTATCATGGATCATTAATTAACAGA GTTTTAGTTGTTTAAGTATGCATATAGATCTTTCTTTTTACTTGATAGGAAAATTATAGATCTTTTTATCGTTTATTTTA TTTATCTTACATTCTTAATCTTAACTAAGTTTTTAATCCAATGGCTACAACTATTGTTGTAGGTGAAATTTATTTTTGGG AAAAAGCTGTTTGTTCTTATGCTTTTCTTTCACTGCAGTGCTAGATTTAGGAGGGTGAACTTGTGAACAATCCTTTTAAG CCATAAACAAATTCACTTCCACTAAATTAAGAACCACCTAACATTAACCTAGGATTCACCTCCACAAGGTGTTCGGAAAA TTCTTTAGGAGCAGGACTAGTCCTCACTTATAATTTGACTAACTCTTCTTAAAACTTAGGATGAAAATTCTCATATTATA TTCAACTAATATCAAACAACAAGAAGTAATGGCAGGAAATGCCATTTGCCAATTGAATTACATTTGATGGCCTAGAACTA TCAGCTTGTTCCTTAAAAACTAAACACTCATTTGGAGCAACTATATTTATATTTAGATGATGGGGAAACAGAAATGTCTC ACTGGCCACTCTTTGTTTTGGACTTTGAGAAAATAACAAATGGAAATGAATAGGTGCTACAACAATCAATCTGAATGCTT TTTTCAACCTATCTGTTTCCAAACTACATTCATTGACAGTTTGACATCAGAAAACCCTAAACTATAGGAAGACTAAACGC AAGAATATACGTGGCCTGTTGATTTTTTTCAGTGACATGTAATTTGTTGTTTGCATATCACTCATAAAAAAAGCAACCTT GGTGAGCCTCCTCAACTAGACACTATCACACTTTCTCATTTCTCTTCACATTTGAAGACATCAACCCAACACAAAACATC ATCATTCAAATCAGTTGGGGCAAAAACAAACAAGAAATACACATATTCTGTTACACCTTTCTTCATAAGTTCTTGTAATA TTGTGTTGAAGATTAAGAAACTCAAGGGTTTGATGAAGAACTCCACACTATGACATCAGATAACTAACATTGGCCAGGAC TCACCCGGAATGGCCGTAATAATATACATTTACACCTCCCTTCAGAAATCAGAGGCAATTTAAACTGCACACACAAAATT TCAGTGTCAAGCGAGGCTTCTGTTTCCTTGACTCTGCTAGCAGCCACATGTGCCAGTTCATGAAGCATAACAACATCCTC TCCAATAATCCTTGCATAAGTGCGTGTCTACTAAAACAACCAATCAAAAATTGAAGATAACAATCAAATAACTTCATACC AAGTTTTGATCTCTTTGAGCAATCAAGAATTACAAGAGCATAATATTTATAGGCATAACTGAATAAAATGCTCAAGATAA CATTAAAAGAAATTTTATCATAAATTCTCATCCAATATGATTTTAGCTTTAGAATCAATCACAAAGCATTTTCAAACATG CAGTTAATTTCTTGTAAAAATCACTTACATAACTAGATAGCAAAGCTATGTAGAAGAGCCCTCCTTGTGATCATCATCAT CATCATCAGAGCTAGAGTCCTCAACTATTCTCCGCCCCGCAATCGCCGGAAATAGCCGCCTATGCAGATCAGAAGGTGCC GGCGGCGACTGCTGATGACGAGTGTCAGGAGAAGACGGCACGGAAAGAGCCTCTTTCCTCTGAGAAGACTTCACCGCCCT CAGAGTCTTATCCCTCACCTCCTTGCACACCTTGTCCAATATGATCAAGAAATCACGCACTATCAAGAACAAGCGCAACC CTTCATCCCTCCCTGCATTCCCGTGGAAGTAATCTGCAGTGCTCTTCACCTGCGCAATGATCCTCTTCTCTTCCTCCTGC AGCCATGTCACCTCCTCCCTCGCCTTCTCCACGAACCTCTCTGTGCAGCGCTGGAACTCGCTCTCTTCATCCAAACTCTT AAGATCAGTGTTCATAAACTCCTGCGTCTTTGCCAGCGAGTGTCCGAGTTTTGAGACTGCACTGCTCAGCGCGTCACCGT CTATGAGCGCTGCTCTTTTGACATCTTCAAGTTCGTTGCTCAGACTGGAAACTACCTGAAGACCAAGGCTGCGGTAGTGT TCTTCAGATGCTTCGGGGCTTTCGTCGACGTCTTGGTCTGTTCCCACGCTGGAAACAACACTTCTGCTTTCTCTCTCGGT TCTCACGGCTCTTATGCCCTCTGAACGGATGATCTCCTGAACCACGAAGTGTAACAGTGTTGTCTTTCCGTCGGTTCCTT TCACGTCTGAGAGTTTGAGGAGAGTGTCCAGCCTGAATGCTTGAGCGCCACCGCGGTAGGTGCCATCATTCATGCGGTTA CCGGTTTTGAGAACTGCTTCTAGCAATTTTAAGAATAGCCTGCTTTTTCTAAGCTTGTCGCTAGCAACCTGCCATTCAGA TGCAACAAATTAAACAACCATGATGTAGCACTTTAATTTGTTAAACAAATCTCATAAACAACAATGATATGTAGACAATT GAACAAATATCTAAGTAATATTTTCCTCTCATAAATGCATGCAACTTATATATGGAGTCCGTTTACATACAGACTAAACA CTTATTGGAGATTATCTTTGGTCCGCATCCAAACGGGATCATACTTGCTGAACTTGTAGGGTAGTTTTAAGTCAAGGTCC ACAACCGCGTTTGCAGCCAACCAGCCACAATATCATTATTTTGGAGGTCTCTGCGATCGCATGCGACCACAACTGTACTC CTATCAACCTCATTTGTTACAATTTTATGCAATATCAAGGATGATGCAACTGCGATTTAAACCTTGATTTATACTTAACT ACATTAACCAAAGTCTTTAAAGTGAATTCAATTAGTGGGAATGCATAACAATACATAGTTGGATCTTTATAAAAGATGTT TTCAAAAATAACTACACTCGATTTTCATTCTCTCAAACAATCATATTCATGCATACAATATGTGTGAAAACTTCTTGGTA CTAAAGAGCATTTTCTGTGAGGTCAGTTACTACATGGTCCAAACAAGGTTATAATACCATTCTTAACATAAGTGAAGTTT AATGGCGTACCATATAAATCTAGTTAATTTTAGTGTTTGACTAATGAAATAAACATTGAAATTCACTTAATCTCACCTCT AATGTTGCAAATGACTCCTTAATGCTTGAGGCCTCTTCTCTAAGGATAAACATGAACAGCAGAGTTTCAAGACGTTTGAA AGCGAATGGAATGTCCACCAAGACTTTGAGGAACCTCTCTGCTGGGCCTAATTGAGACAACTCTCCCGTGAATAACCTGA GCTTCAGTTCCTCTTCTGTTGTTGGTGCCATCTTCAACAGCGTCTGGATGAGCTCGACAGGAATCTCATTACCTGATTCA AGAAACATATTGTAACTTGTCCGTGCTTCAAAATGCAAATCTATTCTTTGGGAAATGCTAAAATAAAATAAAAAGATGCT TTTGAATTGTTTCTAATGCTAAAATCAATAAAGTAAATCAGAATCGAGGGGAACACCCTCCCTTATTAATCTAAACTCTG CATGTGATGTGATTCCTAACATTCATCAAATAATGTCATGAGAACATGTAAAGGAAAAGTGAAAGACAGAGTTACCTTCT CTAAGAGCATCTATAACTTCATCTGTTGTCACATTCAGAGCTCGTAAAAGAATTGATAAATTCTGTGCTTTCTTAGGGTC AATAATCTGAATATACTGCACTGATGTATCAACAGATGGTGAATCTTTTTTGCGTTCATTTCTGTTCTGGTTGGCACAGC CAAATAAAGACTCCATCTTTTCCTCATTGAACCTGAGAAGTATAGTTACAAAACATTAGTCCAATATTATTGGTATATTT TTCATTGATTAATCGAGGAAATTTTGATCTCCGACAGGAGTTAGTGTTCATACACGAATGACCCTGCACTGATCTCATGC CACACCATTTGTTGATCAGGTTTTGCAGCAACCTTATCCCAAAAGAATGGTTTTAGTTTTGGTTTTGGAGCATCACCATC ACTAGTACCTCCCTGATTAGCTCCTTGGTTTCCAACTTTCACTGGCTTGGGAGGAGCAGGAGGAGGCTGACCAGCTCTAG GAGGTGGTGGTGGACGAGGAGCAGGAGCAGGTGGTTTCCGTGGTGGCGGTGGTGGAGGCGGGCCAGGGGGTGGAGGGGGT GGTTTTCCATTAGGAGGTTCCGGTACTTGTCCCACACCTTCTGATGATGTTGCCTCAACCACTGAGGTGTTGTTATCTCC AGCCTTCATAGACCAATTTCTAACATTAGAAGGCTTCTTTCCATTGCTAATACCAGATCCTTCATTATTAGCATTTCCCA AACGGACAACCTTCTGTTTGCCTGAAGTGGGGAAAAACATGAAATCATAAATTCAAGGACCAGATTAATGCATGTTAGGA AATCCTTCTAAACCAAAATCAATTCTGTAAAGAAGCTTGTGGGTGCTATAATTGATTCTGAGCAAAAAGAAGCTAATCTA AACATGTTATGAATGTTTCACACTCATAGTCATATATTATATACTAGGCTAACATAAAAAGCATTACATGAGCATACCTC CAGAGTAATCACTTGAAGTTAATATGAGTAAAGGCCCTTCATCTTTGTCAGCTCTGTCGCTTCTTCTGGACTCGCGATAG CATAGAGCCAGGCCAATCATGATAATAATTCCTGATACAGTGACAGCTAAAATAATTGCTTTCTGCTTTCTATCACCTTT GTCAGGAGGTGAAGGATCAGGAGCATATGTTACATGTTGTAATTTTTCAGGAGAAGGAGGAGGATGTTGGCGCGGTGGTG ATGTTGGCGGCACCATTGCAGTGGGACTTGGAGTTGATGATGGTGAAGAATTTTCTGGTGTTGGAGTTGGTGATGATGGA GAATTTGCTGGTGTTGGACCATGATTTGGTGTTGGTGATTCCAATGCTGGCCCTGGGGATGGAACTGTACCAGCTGGACT TGGTGATAACTCATTATGTGGAGGATCAGAAATCAAGTTTCTTCCATGATGACCACTTTCCAAACCCAAAGTTGATCTAG AATGTTTTGTTAACAAATATCTAGAGCCAGTTTTCTTTTGAGAAACAGGAGGAGCAGGAGGAGTGCTCCTTCTAATGCAA TCTAAAACCTTTTTTCTCATAACAGGAGACAGAGACTTTGTTGTCTTAGGAATTTCATTTTCTAGTAAATGAATACACCT CAAGTCACTGCCTCTTTCCAGTAAATGCAAGTCAAAATCCTTAACATCATCATTACTCTTTTCTACCAATTCTTTCCTGC AATGTTTCCCCACATTTTCTACCTATATCAACCAAACAAGAGAATATCATGAGCAATTTTGGCAAACACATCATTAGCAT GATCATGAATGATGAAACAACATAAAAACCAGCTCAGAAATTCCAACAAAAACAGAGAAATGCTGAAACTACCTGTTTTC CATGAACATGAAAGGAAGATGAGAAAGATGGTCCTCCACCAGCACAGCTAGAAAAATCCTCGTCCTTCCCCTTCTTCCCC TCTGAGCCCCCTTGAGCCAACGCGCAAAGGAGGATGACATAAATAACCGCATAACCGGGTCTTGTCAATTCCATTGCTAT CAAATTCACCAACCCAAACGCAAAATTCCCATCTCATATCTCATTGAACTTTCAAAGTTCCTTCTCTCTTGCTATATTTT TATCCAACCCCAGAAACAGAATGAGCTTGTAGAAATATCCAAACTCTTGCAACTTTTTCTCAAAGGTTGAAAACCCAAGA ATGAGGCTGGAAATGTGAGAATGTAATAGGAGAGAATTGAATATAATGCAATGTTGAAGGGAAGAAACAATCAAATGTTA AGAATTAGCAAGAATTATGTTGTTGTAGATGATGATCATTCGAAAGTTTCTTGGTGTTGTTGTTGTTGGTTGTGCTCGCT GGGTGGTGGGAGGAGGAGGCGTCAGAGGAGAGAGAAAGACAACGATGCGTTGAAGTCAAAAAAGGGGCGTGGGGAGAACT ATGTGGGACACCCGTGATGTCATTCATGTCTTTTCAT
CDS sequence (LotjaGi3g1v0462500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGAGTGGTAGGCATTTTTCTGTGCCTCCTGATTATAATCATGGATGTTGCAGCTGGGATTCTTGCCTTCCAAGC TGAAATAGCACAAAACAAGGTCAAGCATTTAAGACTGTGGATATTTGAGTGTAGAGAACCAAGTCATCAAGCCTTCATGC TGGGTTTGGGTGCAGCAGTGCTTTTAGGACTAGCCCATGCTATTGCCAATTTGCTAGGTGGCTGCAGTTGCATTTGTTCT CAACAAGAGTTTGAGAAAGCTGCCCCCAGTAGGCAACTCTCAGTGGCTTGCCTTATTTTAACTTGGGTCCTGTTGGCCGT TGGATTGTCCATGCTAGTGATAGGGGCTTTGTCAAACAACAGATCAGACGGTTCCTGTGGTTTATCACACCATCACTTCC TGTCCATTGGTGGGATTTCATGTTTTGTTCATGGCCTATTCTGTGTTGCATATTACGTTTCTGCCACTTCCTCCATGGAT TAG
Protein sequence (LotjaGi3g1v0462500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARVVGIFLCLLIIIMDVAAGILAFQAEIAQNKVKHLRLWIFECREPSHQAFMLGLGAAVLLGLAHAIANLLGGCSCICS QQEFEKAAPSRQLSVACLILTWVLLAVGLSMLVIGALSNNRSDGSCGLSHHHFLSIGGISCFVHGLFCVAYYVSATSSMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 160 | 160 | 1.8E-87 | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 160 | 160 | 1.8E-87 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 16 | 27 | 12 | - | – | |
| Phobius | 28 | 50 | 23 | - | – | |
| Phobius | 51 | 72 | 22 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Pfam | 58 | 145 | 88 | 2.8E-18 | ||
| Phobius | 73 | 92 | 20 | - | – | |
| Phobius | 93 | 113 | 21 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 114 | 132 | 19 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 133 | 153 | 21 | - | – | |
| Phobius | 154 | 160 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0462500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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