Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0462900 |
| Transcript ID | LotjaGi3g1v0462900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A0R0EIL9|A0A0R0EIL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87822736..87824835) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAAGTCAGAATCAAAGTTAAATGCACATGTTCAACCTTCTCTGTTCTCTGTATTGAAGTAAACCAACTTTTCAACT TCACATTCCATCCATGGCTCATAATCTTGTTCAGCCACGTGCAATTCTGCCTGTTCACTTCTTCAAAATCGTCCTTAAAA CTAATCTTGAAAGGCTTGTAAGTACTATTGTTATGCTTCTAAGGAGTGCTACATACATATGCATTTGAATATGATATATA TTTGCTATTTGCTCAGGAACAAGTTACTGTAGTTAATTAAGATTACTACGGATTTTTTTAGAAATTATGAAGTTGTGTTT GGATTATTGTTATATTTATGATAGGAATATTGAAATTGTTTCACATACTGACCAACACCATTCTTCGCACAGAAAATACC CAAAAAGTTTACAGAGATGTATGGAGGTGATTTATCAAATCCAGTGTTTCTGAAGCCTCCTGATAGTACTAAATGGGAAG TTTATTGGACAAAACAGAAGGGTGAGATTTGGTTGGAAAATGGCTGGAAACAATTTGCTGAAAATTACTCTCTTGATTAT GGGTGCATGGTGGTGTTTAAATATGAAGGGACTTCCAAGTTTGATGTATTCATACTTGACAAAAGTGCCTTAGAAATAGA CTATCCTTCCTGTGACAAAAACCATGATCAGGGTGATGATGAAGAAGTTCAATTCTTAGGGGAAAGCCTTGCAGACCAAA AGGCTACACTAAATCCTCCATTCCCGTCTTCTCAACCTTATAAGAGAACGAGAAATGCTTCATCTGTGAATGTGGAAAGA AATTCCAATATGCCAAAGTTCCATGCAGGGGAAGGTGATCAATATGATCAAGGGACAAAGTTTAACAGAACTGTCAAGCC TAAACTTAAAGGTATGGAATTCATGATCTGCTTAGATATTTTTTTAAGCTTTCTGTTCAACACTTGTGGTGGTTATCCAA AAAAATTAAATTGTTAAGTGAAAATTATGACTAATTTTATCTTATACTTTGCACAAAAGAAGTTTATTAGACTTGATGGT GGACAATGAAACCCACCTTCATTATGCTAAAATTTAACCTTTTCGGATAACATATATATAGCTTTAATTTCTACTATTTC TAAGACCTCTATCTTAAGAAATTCTTTGTACATGGAACAAACTTGAAGGATTGCATACAAATTAACATTTTCTGTGTCTT TCTGCTAACTATGAAATAATTATCTGAAGCTAAACCACTAAAACCACTAAACTCAAATTAAGTTTAGACGTGTTTGGTTT GCATTTTCCAGGTGGGAGCACTTCTCAAAGAACATCGTCGTTGAATAGGCCCAAGACACTTAAAGCTCAGACAGTAGCTC AGGAATTTGTCACAAACAATATTTTTTTCACGGTGGTCATTATGCCATGTCATCTGGTTGAAAATGCAGTGGTATATATG ATTAAACAGATTAGGATCCTTTCATGTTGAAATTACACATCATATTGTTATGTTGAAAATTTGTGTCTATTTAACACAAT GTTTCACATGATATATCACGTGACATTAGAGCATCAAAATATATGGTTAAACACTTATGTTACCTTATTTATGCATTCAT ATACAATTATATGTTATGAACTTTTGATTGTAGCTAGCATTAATGTTACATTATGCAGAAGAGAGTACCAAAGTTCATAG ATTTTGAGAACAAGGAGCCTCGTGTGATTTTGCAGCATGGAGAAAGAACGTGGCCGGTGAAGGTGGTGCGTAATGGTGCA TATCTCCTCACTTGTGGCTGGTCTTCTTTTGTAACGGAGAGTAAATTGCAAGATGGAGACATTTGTGTCTTTGAGTTGGT TGACAGAGAAGTTCCAAAGCTTGAAGTTCATGTTTACTAAGATTCCCATTAGCTTATTCAATTCATCATCCTCTAGGAGC TAGCTTTCTCTGAATTTTGCAAGAAATGTGACTTTTTTTTCATTTCATCATCTAATGTTGAAAGTGACATTTGAATGTAG TTAAATAGACTTGATCGTTTGGGTGAAGTTAGTCTTGAGAAATTTGAGTGAAGATGTTATGGTCCATTTCACACTTCTAC TACAAGTTTAATTAAACCCC
CDS sequence (LotjaGi3g1v0462900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCATAATCTTGTTCAGCCACGTGCAATTCTGCCTGTTCACTTCTTCAAAATCGTCCTTAAAACTAATCTTGAAAG GCTTAAAATACCCAAAAAGTTTACAGAGATGTATGGAGGTGATTTATCAAATCCAGTGTTTCTGAAGCCTCCTGATAGTA CTAAATGGGAAGTTTATTGGACAAAACAGAAGGGTGAGATTTGGTTGGAAAATGGCTGGAAACAATTTGCTGAAAATTAC TCTCTTGATTATGGGTGCATGGTGGTGTTTAAATATGAAGGGACTTCCAAGTTTGATGTATTCATACTTGACAAAAGTGC CTTAGAAATAGACTATCCTTCCTGTGACAAAAACCATGATCAGGGTGATGATGAAGAAGTTCAATTCTTAGGGGAAAGCC TTGCAGACCAAAAGGCTACACTAAATCCTCCATTCCCGTCTTCTCAACCTTATAAGAGAACGAGAAATGCTTCATCTGTG AATGTGGAAAGAAATTCCAATATGCCAAAGTTCCATGCAGGGGAAGGTGATCAATATGATCAAGGGACAAAGTTTAACAG AACTGTCAAGCCTAAACTTAAAGGTGGGAGCACTTCTCAAAGAACATCGTCGTTGAATAGGCCCAAGACACTTAAAGCTC AGACAGTAGCTCAGGAATTTGTCACAAACAATATTTTTTTCACGGTGGTCATTATGCCATGTCATCTGGTTGAAAATGCA GTGAAGAGAGTACCAAAGTTCATAGATTTTGAGAACAAGGAGCCTCGTGTGATTTTGCAGCATGGAGAAAGAACGTGGCC GGTGAAGGTGGTGCGTAATGGTGCATATCTCCTCACTTGTGGCTGGTCTTCTTTTGTAACGGAGAGTAAATTGCAAGATG GAGACATTTGTGTCTTTGAGTTGGTTGACAGAGAAGTTCCAAAGCTTGAAGTTCATGTTTACTAA
Protein sequence (LotjaGi3g1v0462900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHNLVQPRAILPVHFFKIVLKTNLERLKIPKKFTEMYGGDLSNPVFLKPPDSTKWEVYWTKQKGEIWLENGWKQFAENY SLDYGCMVVFKYEGTSKFDVFILDKSALEIDYPSCDKNHDQGDDEEVQFLGESLADQKATLNPPFPSSQPYKRTRNASSV NVERNSNMPKFHAGEGDQYDQGTKFNRTVKPKLKGGSTSQRTSSLNRPKTLKAQTVAQEFVTNNIFFTVVIMPCHLVENA VKRVPKFIDFENKEPRVILQHGERTWPVKVVRNGAYLLTCGWSSFVTESKLQDGDICVFELVDREVPKLEVHVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 307 | 301 | 5.3E-73 | – | |
| PANTHER | 7 | 307 | 301 | 5.3E-73 | ||
| Gene3D | 10 | 107 | 98 | 7.0E-25 | ||
| ProSiteProfiles | 13 | 106 | 94 | 13.296 | ||
| CDD | 15 | 104 | 90 | 3.8366E-16 | ||
| SUPERFAMILY | 15 | 113 | 99 | 4.32E-22 | ||
| SMART | 16 | 106 | 91 | 7.1E-14 | ||
| Pfam | 23 | 100 | 78 | 1.8E-13 | ||
| MobiDBLite | 140 | 160 | 21 | - | – | |
| MobiDBLite | 188 | 207 | 20 | - | – | |
| MobiDBLite | 192 | 207 | 16 | - | – | |
| Gene3D | 207 | 314 | 108 | 2.4E-19 | ||
| SUPERFAMILY | 223 | 309 | 87 | 2.35E-12 | ||
| CDD | 226 | 314 | 89 | 9.91765E-12 | ||
| ProSiteProfiles | 227 | 314 | 88 | 11.519 | ||
| SMART | 227 | 310 | 84 | 0.0013 | ||
| Pfam | 251 | 313 | 63 | 4.6E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0462900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…