Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0463000 |
| Transcript ID | LotjaGi3g1v0463000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Xyloglucan endotransglucosylase/hydrolase; TAIR: AT4G03210.1 xyloglucan endotransglucosylase/hydrolase 9; Swiss-Prot: sp|Q8LDW9|XTH9_ARATH Xyloglucan endotransglucosylase/hydrolase protein 9; TrEMBL-Plants: tr|I3SRU0|I3SRU0_LOTJA Xyloglucan endotransglucosylase/hydrolase; Found in the gene: LotjaGi3g1v0463000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87839138..87840260) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTAGCAAAATGTCTGTGTTCTTGGGTTGGTTTCTTGGTCTTGTGTTGATGGTGGTGGTGGCTGTGGCTGAATCTGC CAAGTTTGATGAACTCTTCCAGCCAAACTGGGCTTTTGACCATTTCATCTATGAAGGAGACCTTCTCAAACTCAAACTTG ATAACTCTTCTGGTAATTAACACTACCATTTTCAGAACTTTCAAGCCAAGTTGAATTGATTTTATTGTGTTATTCATGGT TGTTAATGTTGGCTTGTACATTCATCAGGTGCTGGCTTTGGGTCCAAAAACAAGTACATGTTTGGAAAAGTATCCATCCA GCTCAAGCTTGTTCAAGGGGACTCTGCTGGAACTGTTACTGCTTTCTATGTAAGTGAACAAAATTTAAATAATATAATTA TAAATTTCAATCAATTGTTTGATTAATGTTCTTATTATAAATAATTTTGGATTTTATTTAGACCATATTTTTTATAAATA AAATGTCACTAATGTCACTCAGCTCTTCAATGAATATTGAGAAGTCACACATTAATTAAAAATATAATCTCGTATATGAG AATGTAATCCTCAACTTAAAGCTCTCAAATTTTATCTCTAGCTCTGGGGCCTATTCATTAATTTACACATATTAGACAGT GCATGCAATTTAGTTCTATGAATAATCAATAGACCATGCCTATCAGTGGCACCTACCCACTACCATTTACCCTGTGAATC ACTTTATATCCAATTAATATTTGCATTTATTGGTTTTTTCCCTGACTTTCCCATCCTAGAATCAATAGCTAAATTCAATT TGTGAAGAATGGGACTTCTTTTCATTTCACCATCAACCAACCTAACAGTGACTTCATTGTTCTGTTTCAATTATTGTGGA ATCTAAATGACTCTGACATTGGTGATATTTGAATCTGTGACGTAGATGTCATCGGAGGGTGTAAACCACAACGAGTTTGA TTTTGAGTTCCTAGGCAACACCACAGGGGAACCTTACTCGGTGCAAACCAACGTGTATGTGAATGGAGTGGGTAACAGGG AACAGAGGCTAGACCTCTGGTATGACCCCACCAAGGACTTTCATACTTACACTATCTTCTGGAATCAACGTCAAGTTGTG TAA
CDS sequence (LotjaGi3g1v0463000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTGTTCTTGGGTTGGTTTCTTGGTCTTGTGTTGATGGTGGTGGTGGCTGTGGCTGAATCTGCCAAGTTTGATGA ACTCTTCCAGCCAAACTGGGCTTTTGACCATTTCATCTATGAAGGAGACCTTCTCAAACTCAAACTTGATAACTCTTCTG GTGCTGGCTTTGGGTCCAAAAACAAGTACATGTTTGGAAAAGTATCCATCCAGCTCAAGCTTGTTCAAGGGGACTCTGCT GGAACTGTTACTGCTTTCTATATGTCATCGGAGGGTGTAAACCACAACGAGTTTGATTTTGAGTTCCTAGGCAACACCAC AGGGGAACCTTACTCGGTGCAAACCAACGTGTATGTGAATGGAGTGGGTAACAGGGAACAGAGGCTAGACCTCTGGTATG ACCCCACCAAGGACTTTCATACTTACACTATCTTCTGGAATCAACGTCAAGTTGTGTAA
Protein sequence (LotjaGi3g1v0463000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVFLGWFLGLVLMVVVAVAESAKFDELFQPNWAFDHFIYEGDLLKLKLDNSSGAGFGSKNKYMFGKVSIQLKLVQGDSA GTVTAFYMSSEGVNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLDLWYDPTKDFHTYTIFWNQRQVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| TMHMM | 3 | 20 | 18 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Gene3D | 12 | 152 | 141 | 3.2E-44 | – | |
| PANTHER | 14 | 152 | 139 | 3.8E-78 | – | |
| PANTHER | 14 | 152 | 139 | 3.8E-78 | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 152 | 130 | - | – | |
| ProSiteProfiles | 23 | 152 | 130 | 18.945 | ||
| SUPERFAMILY | 25 | 151 | 127 | 3.04E-37 | ||
| Pfam | 28 | 151 | 124 | 5.6E-37 | ||
| PRINTS | 55 | 73 | 19 | 2.7E-6 | ||
| PRINTS | 113 | 126 | 14 | 2.7E-6 | ||
| PRINTS | 131 | 148 | 18 | 2.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0463000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…