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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0463600 |
| Transcript ID | LotjaGi3g1v0463600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TraB family protein; TAIR: AT1G05270.1 TraB family protein; Swiss-Prot: sp|Q58DF3|TRABD_BOVIN TraB domain-containing protein; TrEMBL-Plants: tr|V7AG78|V7AG78_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0463600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87890774..87895730) extracted from Lotus japonicus Gifu genome v1.2.
CATTTTCGTACTTTTATTAAGACAAGACATTTAAGAATAACTTGAGAAGGGAGGTTTAGGGTAGGGTCTTGTCTTTTAAG CTTTATTACTCACTTACATCACTTTGTTGGAGAAACCACACGCAAGCCTCAATTGCTTATGACTCACCTGGTGACTCGGA CCCAACTCACTCGACTCACTCATTTCATTCATCACACCAAACCTTCCCTCAAAACCAAAATCCCTCGTTCCCAATTCGTA ACCTTCCCTCAATTCTCCACCAAAACCTTCCCCTCCCTCCACCGCGCCCAACCACCGGCAATGGACGCGCAACCGCCGGA ATCCGGCGCGCCCGTCGCCGGAAATGAAGACTTCGTCCACGTCCATGATCTCAACATGGAGAGCTTGTCTGACAGCATGG TTCGAATCGACGAGCCTTCATCAGACGCCACCGTCGCCGCCGCTGTCGCTGCTGCTCCTCCGCCAGGTCCTGAATCTCTG CTGGATGCTACCTATTACCGGCCGGAGTCGCTGCCGGAGGAGCTCTCCAGAAACGTGATCGTCCTGACGTGCGAGTCGGC CACCGCTGATGAAGGCCTTTGCAATGTCTACCTGGTTGGCACGGCTCATGTCTCTGAGGTATTTGCTCTTTTGAATTTGG TTGCAATTGCATGGTGCGTGATCATATCACTGTCTTCAATCAGAACAAATGTTAGGGTTTAATGCATTCATTTCAATTGG GATTGTTATTGTGTCATTCAATTGCAGAGAACAAATGTGTCTGTGTTCTCTTTGTTATATTGATTCTAGTTGTAACATTT TTGCTGAATTATGTTGTAGGAATCAAGCAGAGAAGTTCAAGCTATAGTCAGTTATCTGAAACCTGAGGTGATGTTTCCCT TTTGAATTCAATAAGCTTCATTGGATGGATTGACCATTTACATGCTTAGCTGCCTGCTTTTCATCTTGTAAATTTTCAGT GATTAAAGGGTATGTCTGGCCTATGTTTGCTGCAGGTTGTCTTCTTGGAATTGTGCTCGAGTCGTGTGGCGGTGCTTACC CCTCAAATTCTCAAGGTTTAATCTACTCTTTAACTTGGTATTTTCACAGTGAGAAATTCCAGTTACACACTCTTTCTAAC ACGATCTCTATTATGGAGTGAATTTCATGTTTGTTCTTCTAAAAGCTTGGGTCACTCTTTCAGTGGGACTGGTACCAATG TGAAAACCAGAATATGTTGAAAGGAATGTGTCAAAGAGTGTGTTACTGATATTTATTTTTTATGATTTATTATATCACTT CCTTTGTGCCATTTTTTATTTTCCCCTCTGTTGTGCTGTCTTCTTTCTATGCGTAGCTTGAGAGCATAAGTATGCAAAAT ATGAAAAATATTTCATTGTAAGAGAAAATCAGCGAGCTTCAGTTCTGTATTTGTAGATGAGTGCAGGGGTTGAAAGGTTA AGTGTCAAATTGCTGAATATGTATGTAGCTTACTAAGTTACTGGTGATTTCACTGCACTGACAGAATATCATTTTTTTAA TATATTGGCTTATTTATCTTGATGATTTGAACATTTTAGCTTGCAACTCATGAATAGGCCTTTATTTTTTTCTTATTTAT AAAAGAAAACCAGTGATATTTTCTTTCAACAATAAGATGACACTTGTAAATATTGGTCTTTAATGACCTACTATGTTATT TGTCAACTCAACTTTAGCACCAACTAATTTCTTTAAATTCACCATTGCTTTGGTTCTCATTCAGTTAATACTAATACGTC TATTTATTCTGTGCTCCTTCCAGGTACCCACTTTTGGAGAAATGATTGCAATGATGAAGAAAAAGCATAACATGTTTGAA GTACTTTACGGCTCGTTCCTTGCCAAGGCATGTTTATATGTTCACTGTCATATTTATCATCCCTGTTAGATTTTCAGTTT TTAATCTTTCATTCTTATTGAAGAATGTTGTATTCCTTATATACCGCTTTCCTCCCCTTAAATTTCTAACAGATTGCTAG TAGACTGGAGGTCTTTCCTGGCTCTGAGTTTCGAGTGGCATATGAAGAAGCTATCAAGTACGGTGGCAGAGTGATACTTG GTGATCGCCCAGTACAGGTTAGATTAGTTTTTTGACTTTAGAGTTTGTTGAATTCTGGGAAATTCTTTGGTTCAAAATAT TACTCTGTAAAGACTCGGTCTATTTGAATATCTTTTATTCCCAGAGTTAAGCCATTATGCTGCTTACACAATTATGTGAG AAAATTTGCTAATTGTCAATTCTTTTGCATGTTTTTTACTCTTGGTATTCTCTTGTGCATAAAACCATGTTGTATAATAA CTAGAAAGGCTAATAGTAATATTTAGTAGCTGGAAAAGAAATGCTAGTTTTTTGTCCCTGTGCTGTGCTGTAAGAATTTC CTACGTCTCCTTTGCTGGGGTATTTATATTAACACTTCATCTTAAAGAAAGAGGTAGCTTACTGCATTAAGCTCCCACGG AGAGTAGGTATGTGCAGTCTTACCACTGTGAACAAAGAGGCTGTTGTAGCAACTAGAACCTGTGACACATAGCAACATTC TTACTTTGCATGAAGATTTTGAAGGCTTACTCTCAAACACTTGGAATTGTTGAATGCTTACGAGATTTTCTTAAACATGG TAGAACTATTGAAATTTACTAATGTAACGTAAGAGTCCATTTGGCTGAGTCATTTTTCTTAAGAAAGAGGTGATTTTTAC AATAAGAAACGTGTTTAAAAATTCAGATAAGATTTTTGAAAAAAGGCAGAAACCTCAACAAAACCCGTTTTAGTGCTCTT TTCAGAAGCGCTAGTGAATAACCTCTGAAAAATAATCTATATCATAAAAGAATTTTTTTAAAGCATATCCAAACTGACCC TATTTATGTAAAAAAAAAAATTCAATAGTTTTTGTATCACATTTGCTTTTGTGTGGCTATGCTTTAGAACTTTCATTTTG TTATATTGATGGGTTTTGATTTTGATTGAGACAGATTACATTAAAGAGAACATGGAGTAAGATGCCCCTTTGGCATAAGA CAAAGTTGGTGTACAATTTACTTTTCCAAGCAGTTTTTTTACCCAGCTCTGATGATCTTAATAAAATGGTAAACTTTACA ATCTCGAACCTTCTTGTGCAAGTGATAAATGTAAACTAATTTTATTTGTGCCAAGTTCTTGTCTTTATCCTAAGTCCTAA CTTGGTTTTGCTTTCTTCAGCTGAAGGAAATGGATGACAATGACATGTTAACTCTTGTAATTCAAGAGATGAGTAAGGAG TTTCCAACTTTAATGGAGACCCTTGTGCACGAACGCGATAAGTAAGTTTTATTGCACTTAATTCAATAATTTTTCATTTA TTGCATCTTACCTGGCACTTCCCTTATTCTTTAGAGAATGCTTCGGTTAACATTTGTCACCCCAGTTATCCATTTAGCAG AGCGGTCCTTGGAGGGTATCCTGGACATGGTTCTGGTATTGGCTTTACCTGCATACCCTAGAGCCACCCCAAAGATCTGA ATTCAAACACTTTGTAGGGATGGGCTTCTTACCCTGAGCACCCCTTTTGTTTCAGAGCATAGGATATGGAAAACCTTGAA TTTACCTTATTGTAAAGGTTTTTTTATTGGGTTGATGTTATTCCTTTACACCTTTTGACAAGTGCACTGGCATTCTGGGA GCTTAAATGAAATAGCTTCTTTATAGATTCTATCTGCAGTATACTGTAGTCCTCTCTAGCCCATAAGGAACAAAACAAAG TTTTCCAGAAAGTCCCTGGCGTCAGTTCGGAAATAGGGTGATGTTGACAGTTTAGGCTAATTAATATCTTAGTGCATACA TTTTTTATTTTTCCCTCACTATTTCTTCTTCACAAAGAATTTGTATGATATAGAGTAATATGTTCTGGCTTGAACAGAAT AAACCATGACTAATTGTCTGACATGGCACCCTTTGCCTTCTGGTGGTGTTGAGGATGCTGGATGCTATTGTCATCTTCTT TCAACACACTAACTACCTTTGGTATTCTGTTCTTCCTTTTGAAAACTAGTATCTTGTAACGTCTTCAATCCCACAAGCTC CTCCCCCATGTCTGGTTAAATGGGACCATGCCTTTACTGTGAGAGACACAAACAGTTATGGTTTTAGTTATTGGCTGACT TGAAGTCCGTTTGGCCTCTGCCTTGTCCACAATACAATTATGTATACTATTGTGTCAATATATTATGTTTGATTGGACTT TCCATATTTCGTCTATCCAGGTATATGTCCTGTGCGTTACTGAGAGTGGCATGTCAGAATAGCTGCGTTGTTGCTGTTGT TGGAAAGGGCCATCTACAAGGAATAAAGAAACACTGGAAGCAACATGTTGTGGTTCGTGAACATTTAGTTATTTCTGTTA TATAGTTGTAATAAATGCTAGATTTATATCTTGCAATTTCTTTCAAGAATCATAGTATTATTCCTTTATTTTTCGTTGTC ACATTTCCTTACGTCAATTTTCCTTTCTGTCTATCAGATGAGTGATCTCATGACAATTCCATCTCCGAAACCAGGTATCT CTGCATTGAAAGTCTTTACATCTGTTGGTGTTGCCGTCGCTGGGGTGGCCATAATATCGGGCATCTACCTCTCATGCAAG AAGTGAAAGTCGTTGGTGTATGAATTGGGATACTAACAGTTCAGTACAGTTATACTATCATCAACAAAGTTGGTGCATAT GCCATTTAATTTTCTTTTTTAATATAAAGAGTTGCAAATTTTTCCTGGATCTTTCTGAAGTTTGTGAAATCTTGTTTATC TTGCGCTTTACTCCGACAGTTTTTCTTAAGAGGATTTCCATGGGGTAGAAAATTATGCGGATATTAATATTTGAAATGTT GTATTCCTAAGTAGAAGATAATTTACACAGCGAAAAAGGTGCTTAATTCATTTTAAATTTCGTAATATGAAAATAAT
CDS sequence (LotjaGi3g1v0463600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCACCTGGTGACTCGGACCCAACTCACTCGACTCACTCATTTCATTCATCACACCAAACCTTCCCTCAAAACCAA AATCCCTCGTTCCCAATTCGTAACCTTCCCTCAATTCTCCACCAAAACCTTCCCCTCCCTCCACCGCGCCCAACCACCGG CAATGGACGCGCAACCGCCGGAATCCGGCGCGCCCGTCGCCGGAAATGAAGACTTCGTCCACGTCCATGATCTCAACATG GAGAGCTTGTCTGACAGCATGGTTCGAATCGACGAGCCTTCATCAGACGCCACCGTCGCCGCCGCTGTCGCTGCTGCTCC TCCGCCAGGTCCTGAATCTCTGCTGGATGCTACCTATTACCGGCCGGAGTCGCTGCCGGAGGAGCTCTCCAGAAACGTGA TCGTCCTGACGTGCGAGTCGGCCACCGCTGATGAAGGCCTTTGCAATGTCTACCTGGTTGGCACGGCTCATGTCTCTGAG GAATCAAGCAGAGAAGTTCAAGCTATAGTCAGTTATCTGAAACCTGAGGTTGTCTTCTTGGAATTGTGCTCGAGTCGTGT GGCGGTGCTTACCCCTCAAATTCTCAAGGTACCCACTTTTGGAGAAATGATTGCAATGATGAAGAAAAAGCATAACATGT TTGAAGTACTTTACGGCTCGTTCCTTGCCAAGATTGCTAGTAGACTGGAGGTCTTTCCTGGCTCTGAGTTTCGAGTGGCA TATGAAGAAGCTATCAAGTACGGTGGCAGAGTGATACTTGGTGATCGCCCAGTACAGATTACATTAAAGAGAACATGGAG TAAGATGCCCCTTTGGCATAAGACAAAGTTGGTGTACAATTTACTTTTCCAAGCAGTTTTTTTACCCAGCTCTGATGATC TTAATAAAATGCTGAAGGAAATGGATGACAATGACATGTTAACTCTTGTAATTCAAGAGATGAGTAAGGAGTTTCCAACT TTAATGGAGACCCTTGTGCACGAACGCGATAAGTATATGTCCTGTGCGTTACTGAGAGTGGCATGTCAGAATAGCTGCGT TGTTGCTGTTGTTGGAAAGGGCCATCTACAAGGAATAAAGAAACACTGGAAGCAACATGTTGTGATGAGTGATCTCATGA CAATTCCATCTCCGAAACCAGGTATCTCTGCATTGAAAGTCTTTACATCTGTTGGTGTTGCCGTCGCTGGGGTGGCCATA ATATCGGGCATCTACCTCTCATGCAAGAAGTGA
Protein sequence (LotjaGi3g1v0463600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTHLVTRTQLTRLTHFIHHTKPSLKTKIPRSQFVTFPQFSTKTFPSLHRAQPPAMDAQPPESGAPVAGNEDFVHVHDLNM ESLSDSMVRIDEPSSDATVAAAVAAAPPPGPESLLDATYYRPESLPEELSRNVIVLTCESATADEGLCNVYLVGTAHVSE ESSREVQAIVSYLKPEVVFLELCSSRVAVLTPQILKVPTFGEMIAMMKKKHNMFEVLYGSFLAKIASRLEVFPGSEFRVA YEEAIKYGGRVILGDRPVQITLKRTWSKMPLWHKTKLVYNLLFQAVFLPSSDDLNKMLKEMDDNDMLTLVIQEMSKEFPT LMETLVHERDKYMSCALLRVACQNSCVVAVVGKGHLQGIKKHWKQHVVMSDLMTIPSPKPGISALKVFTSVGVAVAGVAI ISGIYLSCKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 386 | 386 | - | – | |
| MobiDBLite | 45 | 68 | 24 | - | – | |
| PANTHER | 71 | 408 | 338 | 1.1E-119 | – | |
| PANTHER | 71 | 408 | 338 | 1.1E-119 | – | |
| Pfam | 149 | 365 | 217 | 3.9E-26 | ||
| CDD | 150 | 363 | 214 | 1.71618E-70 | – | |
| TMHMM | 387 | 406 | 20 | - | – | |
| Phobius | 387 | 408 | 22 | - | – | |
| Phobius | 409 | 410 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0463600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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