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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0464400 |
| Transcript ID | LotjaGi3g1v0464400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isocitrate lyase; TAIR: AT3G21720.1 isocitrate lyase; Swiss-Prot: sp|P45457|ACEA2_SOYBN Isocitrate lyase 2; TrEMBL-Plants: tr|I1LRR9|I1LRR9_SOYBN Isocitrate lyase; Found in the gene: LotjaGi3g1v0464400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87972699..87976329) extracted from Lotus japonicus Gifu genome v1.2.
TAGTGATGACATCATATTAAATGAAAGATGACAATCAAGAACGTTGTCAAAGAGCCACCTCCATACGTGCCTGCAAATCC AGCTTTCAAGTGCCATGCTTCACCATTCTCCCTGAAAATATTCAACGGCATTTAATGAGACTAGATAAAATTTCTTCGGT TTTTGTTTGTTTCTGTTATCCACTGTCATGTAATTTACCATTCTTACAAGTGCGTGATCAACTTGGGTCATTCCACAACT ATATAAATTGAGGAGCTTGAAGCAGCTTTTGCATGAGCTTTCTCATAGTTTCTTAAGCATCAATTTACAAAGAGCAAAAA GAGTTCTTACCATGGCTGCATCAAGTTTCGTGCCTTCATCTGTAAGCTCAATACCCTGCCTTCTTGCTTTGCTTTCTTTG TGCAACAGCTTGTTTGATATATACCTTGTGTTTATAGTTTTCTATAATTTAGTTGAATAAGTTCCTTGAGTTTTAATCCT AAGTTAAGCATAATTGTTGATCATATATGTAAACTTTCTTTGCATTTCAATTTCAGAATTTTTTTTTTATGTCATGTATG TTTTGTTGTAAGTTGTATGGCTCCAGATTTTGGAATTTTTCATGTTACATTATGCTGGATTGCTGGTAGCAGGGAAAGAT TAATTTAATCATGCTTGTATATATATCTGAACCCTACACAAACTAACATGCTAAATTGAAAGCAAGTGACCCTGTTTGGC TTAAAATTGAATTGTGTCATGTAGTGTAAAAGTTTTTGCTAATTAGTGGACTAAACCAAGAATCTGAAGCAATATATGTT TTTCATCATTATTTTCGTTACTTTTTCCCTAATCTGAGATGAAAGAAAATTGAAATTCAATCTTTTCTAATCAAGTAGAA GGTGGTATTTCTGTCTAATTGGACATTATTAATAGTAATTGGATTAAGATTATAGGAATGTCAATGATTGAAAATACAAA GTTATGTACTACACAAACCTCTTTTATATGAGTTTTAAATCAATAAATTATAATATTTGTTTTACAATTTTATGCAGCAG TTGCAAAACATAAATTGTAATTGTAGCTGGTTAGTAACAGATTTCTGATTTTGCAATCATTGGGGAGAATTTATAGAAAA GAAATAACAGATTTCTGGTTTTCCAATCATAGGGGAGAAAATTAAAAGTATTTTAGGATTGCCTAAGAGAGGAAATGATA TAGATTTCCTGTTCTGTGACTAGTATCTCAAAGAGAATAAAATGATCCAAAAGTGTTTGTACATCCAAATGTGTTTGTAT ACTGAGTTCATTTTTAGAAATTCTTTTATAATTGAATCAATTTTGGTATTGGGAAGAAGCTTAGATGAACAGTTTTTTGG TGTTAGAATTTATTTTGAGGAAAAAGAAGTTCATCCAAACATTTGTGCATAGAAGTCTCAACTCAATCTAACTTACAAAT AAATAATTTTAGTCTCAACTGAACTTAACACAAGTTATATGAACAGGTGATGGAAGAAGAAGCCAGGTTTGAAGCTGAAG TAGCTGAAGTGCAAGCATGGTGGAACTCTGAGAGGTTCAAGCTAACCAAACGACCATACTCCGCCCGAGATGTGGTGTCC CTCCGAGGCAACCTCAGACAAACCTACGGCTCGAACGAGATGGCTAAGAAGCTATGGCACATTCTCAAGACCCACCAAGC CAATGGCTCAGCCACAAGGACTTTTGGTGCACTTGACCCAGTTCAGGTCACCCAAATGGCCAAGCACTTAGACACCATCT ATGTCTCAGGGTGGCAATGCTCTTCCACTCACACCACCACCAATGAACCTGGCCCTGACCTTGCTGACTACCCTTATGAC ACTGTCCCAAACAAGGTTGAGCATCTCTTTTTTGCTCAGCAATACCATGATAGGAAGCAAAGAGAGGAGAGAATGAGAAT GAGCAGGGAAGAGAGGGCTAGAACCCCTTATGTTGATTACTTGAGGCCAATCATTGCTGATGGTGACACCGGCTTTGGCG GCACCACCACAACAGTTAAGCTCTGCAAGCTCTTTGTGGAGCGTGGCGCGGCCGGTATCCACATTGAGGACCAATCTTCT ATGACAAAAAAATGTGGCCACATGGCATCTAAAGTGCTTGTTGGAATCAGTGAGCACATCAATCGCCTTGTGGCTGCAAG GCTTCAATTTGATGTCATGGGTGTGGAAACTGTCCTGGTGGCGCGAACCGACGCAGTTGACGCTACCATGATTCAGTCCA ACATTGACTCCAGGGACCATCAATTTATCTTGGGTGTGACAAACCCAACTCTCAAGGGAAAGACTTTGGCAAATCTCATT GCACAAGGCATGGCTAATGGGAAAAGTGGTGCTGAGCTTCAAGCTTTGGAGGATCAGTGGCTAGCAATGGCAAATTTGAA GACTTTCTCAGAAGCTGTTGTGGATGCAATCAAGAGCCAGAACATTGGAGAACAAGAGAAAAGGAGAAAATTGAATGAGT GGATGAAATGTTCTAGCTATGAAATGTGTCTTTCAATCGATGAAGGCAGGGACATTGCTGAGAGACTGGGGGTGAAAAAC CTCTTCTGGGACTGGGATTTGCCTAGAACAAGAGAAGGGTACTACAGGTTCAAAGGTTCTGTGACCGCGGCAGTTGTTCG TGGCAGGGCTTTCGCTCCTCATGCTGATGTGATATGGATGGAAACTTCAGGCCCCAACATGGTTGAGTGCACTAGTTTTT CTGAAGGGGTTAGATCAAAGCACCCTGAGATGATGTTGGGGTACAATCTTTCTCCATCTTTCAACTGGGATGCTTTTGGA ATGACAAATGAGCAGATAAGAGACTTCATTCCAAGGATTGCTAAGTTGGGGTATGTGTGGCAGTTCATAACAGTGGCTGG TCTGCACTCTAATGCACTCATCACTTCAACTTTTGCAAAGGATTTTGCAAGCAGGGGAATGCTGGCTTATGTGGAGAGGA TTCAGAGAGAGGAGAGGAACAATGGAGTTGACACTCTTGCTCACCAGAAATGGGCTGGTGCTAACTACTATGATAGGTAC CTCAAAACTGTACAGGGCGGTGTTTCCTCAACTACTGCAATGGGAAAAGGTAAGTCATACTCATGCTTTTTCTCGCCGCA CGATTGAAAGTTCTTCTAGAATTGATTTTGGAAAAAAGATTATGTGAGTAGCTTCTAAGTGTCATAATTGATTCTTAGGA AAAAGAAGCTTTAGGAAAAACATTGGAAGTTTTTTATGATTTGATTTTCTTTCTATGTTGTTTTATAGGGGTGACTGAAG AGCAATTTAAGGAAACATGGACTAGGCCAGGAGCTGAAGACATTAATGGAGGCAGCATTGTGGTTGCTAAGGCCAGAATG TGAAAGAGCCACTACATATGCTGAAGTATGCTGCTGAGTGAGGAACTTTGGGGAAGTTCACCAATTACTATATTGGATTT GGAATAAATGTCCACAGTAAATTAAACAGGCCATTAAATCATTCTGGTGTTTTTTGGCTGCATAATTTCTTTGTATTTCT TACTTGTTAGGACTCTCAATCCTTATGGGTAAAGGGAAGAAAGAAAACATGTTTGTGTTTGATCTGTTTACTCCTTGCAT TAATATATTTTACATTGTGCACTTCTCAATG
CDS sequence (LotjaGi3g1v0464400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCATCAAGTTTCGTGCCTTCATCTGTGATGGAAGAAGAAGCCAGGTTTGAAGCTGAAGTAGCTGAAGTGCAAGC ATGGTGGAACTCTGAGAGGTTCAAGCTAACCAAACGACCATACTCCGCCCGAGATGTGGTGTCCCTCCGAGGCAACCTCA GACAAACCTACGGCTCGAACGAGATGGCTAAGAAGCTATGGCACATTCTCAAGACCCACCAAGCCAATGGCTCAGCCACA AGGACTTTTGGTGCACTTGACCCAGTTCAGGTCACCCAAATGGCCAAGCACTTAGACACCATCTATGTCTCAGGGTGGCA ATGCTCTTCCACTCACACCACCACCAATGAACCTGGCCCTGACCTTGCTGACTACCCTTATGACACTGTCCCAAACAAGG TTGAGCATCTCTTTTTTGCTCAGCAATACCATGATAGGAAGCAAAGAGAGGAGAGAATGAGAATGAGCAGGGAAGAGAGG GCTAGAACCCCTTATGTTGATTACTTGAGGCCAATCATTGCTGATGGTGACACCGGCTTTGGCGGCACCACCACAACAGT TAAGCTCTGCAAGCTCTTTGTGGAGCGTGGCGCGGCCGGTATCCACATTGAGGACCAATCTTCTATGACAAAAAAATGTG GCCACATGGCATCTAAAGTGCTTGTTGGAATCAGTGAGCACATCAATCGCCTTGTGGCTGCAAGGCTTCAATTTGATGTC ATGGGTGTGGAAACTGTCCTGGTGGCGCGAACCGACGCAGTTGACGCTACCATGATTCAGTCCAACATTGACTCCAGGGA CCATCAATTTATCTTGGGTGTGACAAACCCAACTCTCAAGGGAAAGACTTTGGCAAATCTCATTGCACAAGGCATGGCTA ATGGGAAAAGTGGTGCTGAGCTTCAAGCTTTGGAGGATCAGTGGCTAGCAATGGCAAATTTGAAGACTTTCTCAGAAGCT GTTGTGGATGCAATCAAGAGCCAGAACATTGGAGAACAAGAGAAAAGGAGAAAATTGAATGAGTGGATGAAATGTTCTAG CTATGAAATGTGTCTTTCAATCGATGAAGGCAGGGACATTGCTGAGAGACTGGGGGTGAAAAACCTCTTCTGGGACTGGG ATTTGCCTAGAACAAGAGAAGGGTACTACAGGTTCAAAGGTTCTGTGACCGCGGCAGTTGTTCGTGGCAGGGCTTTCGCT CCTCATGCTGATGTGATATGGATGGAAACTTCAGGCCCCAACATGGTTGAGTGCACTAGTTTTTCTGAAGGGGTTAGATC AAAGCACCCTGAGATGATGTTGGGGTACAATCTTTCTCCATCTTTCAACTGGGATGCTTTTGGAATGACAAATGAGCAGA TAAGAGACTTCATTCCAAGGATTGCTAAGTTGGGGTATGTGTGGCAGTTCATAACAGTGGCTGGTCTGCACTCTAATGCA CTCATCACTTCAACTTTTGCAAAGGATTTTGCAAGCAGGGGAATGCTGGCTTATGTGGAGAGGATTCAGAGAGAGGAGAG GAACAATGGAGTTGACACTCTTGCTCACCAGAAATGGGCTGGTGCTAACTACTATGATAGGTACCTCAAAACTGTACAGG GCGGTGTTTCCTCAACTACTGCAATGGGAAAAGGGGTGACTGAAGAGCAATTTAAGGAAACATGGACTAGGCCAGGAGCT GAAGACATTAATGGAGGCAGCATTGTGGTTGCTAAGGCCAGAATGTGA
Protein sequence (LotjaGi3g1v0464400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASSFVPSSVMEEEARFEAEVAEVQAWWNSERFKLTKRPYSARDVVSLRGNLRQTYGSNEMAKKLWHILKTHQANGSAT RTFGALDPVQVTQMAKHLDTIYVSGWQCSSTHTTTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREERMRMSREER ARTPYVDYLRPIIADGDTGFGGTTTTVKLCKLFVERGAAGIHIEDQSSMTKKCGHMASKVLVGISEHINRLVAARLQFDV MGVETVLVARTDAVDATMIQSNIDSRDHQFILGVTNPTLKGKTLANLIAQGMANGKSGAELQALEDQWLAMANLKTFSEA VVDAIKSQNIGEQEKRRKLNEWMKCSSYEMCLSIDEGRDIAERLGVKNLFWDWDLPRTREGYYRFKGSVTAAVVRGRAFA PHADVIWMETSGPNMVECTSFSEGVRSKHPEMMLGYNLSPSFNWDAFGMTNEQIRDFIPRIAKLGYVWQFITVAGLHSNA LITSTFAKDFASRGMLAYVERIQREERNNGVDTLAHQKWAGANYYDRYLKTVQGGVSSTTAMGKGVTEEQFKETWTRPGA EDINGGSIVVAKARM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 11 | 535 | 525 | 3.95E-175 | ||
| PANTHER | 12 | 557 | 546 | 7.4E-245 | ||
| PIRSF | 12 | 331 | 320 | 3.4E-62 | ||
| Gene3D | 18 | 530 | 513 | 1.7E-231 | ||
| Pfam | 21 | 551 | 531 | 1.3E-278 | ||
| TIGRFAM | 22 | 551 | 530 | 9.6E-253 | ||
| CDD | 73 | 254 | 182 | 1.89149E-30 | ||
| ProSitePatterns | 211 | 216 | 6 | - | ||
| Gene3D | 262 | 377 | 116 | 1.7E-231 | – | |
| PIRSF | 367 | 554 | 188 | 8.1E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Isocitrate lyase activity | Catalysis of the reaction: isocitrate = glyoxylate + succinate. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). |
Expression pattern of LotjaGi3g1v0464400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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