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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0464400 |
| Transcript ID | LotjaGi3g1v0464400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isocitrate lyase; TAIR: AT3G21720.1 isocitrate lyase; Swiss-Prot: sp|P45457|ACEA2_SOYBN Isocitrate lyase 2; TrEMBL-Plants: tr|I1LRR9|I1LRR9_SOYBN Isocitrate lyase; Found in the gene: LotjaGi3g1v0464400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87973940..87976061) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCCAAAAGTGTTTGTACATCCAAATGTGTTTGTATACTGAGTTCATTTTTAGAAATTCTTTTATAATTGAATCAAT TTTGGTATTGGGAAGAAGCTTAGATGAACAGTTTTTTGGTGTTAGAATTTATTTTGAGGAAAAAGAAGTTCATCCAAACA TTTGTGCATAGAAGTCTCAACTCAATCTAACTTACAAATAAATAATTTTAGTCTCAACTGAACTTAACACAAGTTATATG AACAGGTGATGGAAGAAGAAGCCAGGTTTGAAGCTGAAGTAGCTGAAGTGCAAGCATGGTGGAACTCTGAGAGGTTCAAG CTAACCAAACGACCATACTCCGCCCGAGATGTGGTGTCCCTCCGAGGCAACCTCAGACAAACCTACGGCTCGAACGAGAT GGCTAAGAAGCTATGGCACATTCTCAAGACCCACCAAGCCAATGGCTCAGCCACAAGGACTTTTGGTGCACTTGACCCAG TTCAGGTCACCCAAATGGCCAAGCACTTAGACACCATCTATGTCTCAGGGTGGCAATGCTCTTCCACTCACACCACCACC AATGAACCTGGCCCTGACCTTGCTGACTACCCTTATGACACTGTCCCAAACAAGGTTGAGCATCTCTTTTTTGCTCAGCA ATACCATGATAGGAAGCAAAGAGAGGAGAGAATGAGAATGAGCAGGGAAGAGAGGGCTAGAACCCCTTATGTTGATTACT TGAGGCCAATCATTGCTGATGGTGACACCGGCTTTGGCGGCACCACCACAACAGTTAAGCTCTGCAAGCTCTTTGTGGAG CGTGGCGCGGCCGGTATCCACATTGAGGACCAATCTTCTATGACAAAAAAATGTGGCCACATGGCATCTAAAGTGCTTGT TGGAATCAGTGAGCACATCAATCGCCTTGTGGCTGCAAGGCTTCAATTTGATGTCATGGGTGTGGAAACTGTCCTGGTGG CGCGAACCGACGCAGTTGACGCTACCATGATTCAGTCCAACATTGACTCCAGGGACCATCAATTTATCTTGGGTGTGACA AACCCAACTCTCAAGGGAAAGACTTTGGCAAATCTCATTGCACAAGGCATGGCTAATGGGAAAAGTGGTGCTGAGCTTCA AGCTTTGGAGGATCAGTGGCTAGCAATGGCAAATTTGAAGACTTTCTCAGAAGCTGTTGTGGATGCAATCAAGAGCCAGA ACATTGGAGAACAAGAGAAAAGGAGAAAATTGAATGAGTGGATGAAATGTTCTAGCTATGAAATGTGTCTTTCAATCGAT GAAGGCAGGGACATTGCTGAGAGACTGGGGGTGAAAAACCTCTTCTGGGACTGGGATTTGCCTAGAACAAGAGAAGGGTA CTACAGGTTCAAAGGTTCTGTGACCGCGGCAGTTGTTCGTGGCAGGGCTTTCGCTCCTCATGCTGATGTGATATGGATGG AAACTTCAGGCCCCAACATGGTTGAGTGCACTAGTTTTTCTGAAGGGGTTAGATCAAAGCACCCTGAGATGATGTTGGGG TACAATCTTTCTCCATCTTTCAACTGGGATGCTTTTGGAATGACAAATGAGCAGATAAGAGACTTCATTCCAAGGATTGC TAAGTTGGGGTATGTGTGGCAGTTCATAACAGTGGCTGGTCTGCACTCTAATGCACTCATCACTTCAACTTTTGCAAAGG ATTTTGCAAGCAGGGGAATGCTGGCTTATGTGGAGAGGATTCAGAGAGAGGAGAGGAACAATGGAGTTGACACTCTTGCT CACCAGAAATGGGCTGGTGCTAACTACTATGATAGGTACCTCAAAACTGTACAGGGCGGTGTTTCCTCAACTACTGCAAT GGGAAAAGGTAAGTCATACTCATGCTTTTTCTCGCCGCACGATTGAAAGTTCTTCTAGAATTGATTTTGGAAAAAAGATT ATGTGAGTAGCTTCTAAGTGTCATAATTGATTCTTAGGAAAAAGAAGCTTTAGGAAAAACATTGGAAGTTTTTTATGATT TGATTTTCTTTCTATGTTGTTTTATAGGGGTGACTGAAGAGCAATTTAAGGAAACATGGACTAGGCCAGGAGCTGAAGAC ATTAATGGAGGCAGCATTGTGGTTGCTAAGGCCAGAATGTGA
CDS sequence (LotjaGi3g1v0464400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAAGCCAGGTTTGAAGCTGAAGTAGCTGAAGTGCAAGCATGGTGGAACTCTGAGAGGTTCAAGCTAACCAA ACGACCATACTCCGCCCGAGATGTGGTGTCCCTCCGAGGCAACCTCAGACAAACCTACGGCTCGAACGAGATGGCTAAGA AGCTATGGCACATTCTCAAGACCCACCAAGCCAATGGCTCAGCCACAAGGACTTTTGGTGCACTTGACCCAGTTCAGGTC ACCCAAATGGCCAAGCACTTAGACACCATCTATGTCTCAGGGTGGCAATGCTCTTCCACTCACACCACCACCAATGAACC TGGCCCTGACCTTGCTGACTACCCTTATGACACTGTCCCAAACAAGGTTGAGCATCTCTTTTTTGCTCAGCAATACCATG ATAGGAAGCAAAGAGAGGAGAGAATGAGAATGAGCAGGGAAGAGAGGGCTAGAACCCCTTATGTTGATTACTTGAGGCCA ATCATTGCTGATGGTGACACCGGCTTTGGCGGCACCACCACAACAGTTAAGCTCTGCAAGCTCTTTGTGGAGCGTGGCGC GGCCGGTATCCACATTGAGGACCAATCTTCTATGACAAAAAAATGTGGCCACATGGCATCTAAAGTGCTTGTTGGAATCA GTGAGCACATCAATCGCCTTGTGGCTGCAAGGCTTCAATTTGATGTCATGGGTGTGGAAACTGTCCTGGTGGCGCGAACC GACGCAGTTGACGCTACCATGATTCAGTCCAACATTGACTCCAGGGACCATCAATTTATCTTGGGTGTGACAAACCCAAC TCTCAAGGGAAAGACTTTGGCAAATCTCATTGCACAAGGCATGGCTAATGGGAAAAGTGGTGCTGAGCTTCAAGCTTTGG AGGATCAGTGGCTAGCAATGGCAAATTTGAAGACTTTCTCAGAAGCTGTTGTGGATGCAATCAAGAGCCAGAACATTGGA GAACAAGAGAAAAGGAGAAAATTGAATGAGTGGATGAAATGTTCTAGCTATGAAATGTGTCTTTCAATCGATGAAGGCAG GGACATTGCTGAGAGACTGGGGGTGAAAAACCTCTTCTGGGACTGGGATTTGCCTAGAACAAGAGAAGGGTACTACAGGT TCAAAGGTTCTGTGACCGCGGCAGTTGTTCGTGGCAGGGCTTTCGCTCCTCATGCTGATGTGATATGGATGGAAACTTCA GGCCCCAACATGGTTGAGTGCACTAGTTTTTCTGAAGGGGTTAGATCAAAGCACCCTGAGATGATGTTGGGGTACAATCT TTCTCCATCTTTCAACTGGGATGCTTTTGGAATGACAAATGAGCAGATAAGAGACTTCATTCCAAGGATTGCTAAGTTGG GGTATGTGTGGCAGTTCATAACAGTGGCTGGTCTGCACTCTAATGCACTCATCACTTCAACTTTTGCAAAGGATTTTGCA AGCAGGGGAATGCTGGCTTATGTGGAGAGGATTCAGAGAGAGGAGAGGAACAATGGAGTTGACACTCTTGCTCACCAGAA ATGGGCTGGTGCTAACTACTATGATAGGTACCTCAAAACTGTACAGGGCGGTGTTTCCTCAACTACTGCAATGGGAAAAG GGGTGACTGAAGAGCAATTTAAGGAAACATGGACTAGGCCAGGAGCTGAAGACATTAATGGAGGCAGCATTGTGGTTGCT AAGGCCAGAATGTGA
Protein sequence (LotjaGi3g1v0464400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEARFEAEVAEVQAWWNSERFKLTKRPYSARDVVSLRGNLRQTYGSNEMAKKLWHILKTHQANGSATRTFGALDPVQV TQMAKHLDTIYVSGWQCSSTHTTTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREERMRMSREERARTPYVDYLRP IIADGDTGFGGTTTTVKLCKLFVERGAAGIHIEDQSSMTKKCGHMASKVLVGISEHINRLVAARLQFDVMGVETVLVART DAVDATMIQSNIDSRDHQFILGVTNPTLKGKTLANLIAQGMANGKSGAELQALEDQWLAMANLKTFSEAVVDAIKSQNIG EQEKRRKLNEWMKCSSYEMCLSIDEGRDIAERLGVKNLFWDWDLPRTREGYYRFKGSVTAAVVRGRAFAPHADVIWMETS GPNMVECTSFSEGVRSKHPEMMLGYNLSPSFNWDAFGMTNEQIRDFIPRIAKLGYVWQFITVAGLHSNALITSTFAKDFA SRGMLAYVERIQREERNNGVDTLAHQKWAGANYYDRYLKTVQGGVSSTTAMGKGVTEEQFKETWTRPGAEDINGGSIVVA KARM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 320 | 320 | 3.2E-62 | ||
| PANTHER | 2 | 546 | 545 | 2.0E-244 | ||
| SUPERFAMILY | 2 | 524 | 523 | 9.42E-175 | ||
| Gene3D | 7 | 519 | 513 | 1.6E-231 | ||
| Pfam | 10 | 540 | 531 | 1.2E-278 | ||
| TIGRFAM | 11 | 540 | 530 | 8.9E-253 | ||
| CDD | 62 | 243 | 182 | 1.53321E-30 | ||
| ProSitePatterns | 200 | 205 | 6 | - | ||
| Gene3D | 251 | 366 | 116 | 1.6E-231 | – | |
| PIRSF | 356 | 543 | 188 | 7.8E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Isocitrate lyase activity | Catalysis of the reaction: isocitrate = glyoxylate + succinate. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). |
Expression pattern of LotjaGi3g1v0464400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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