Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0466300 |
| Transcript ID | LotjaGi3g1v0466300.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-isopropylmalate dehydratase large subunit; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|Q9SIB9|ACO2M_ARATH Aconitate hydratase 2, mitochondrial; TrEMBL-Plants: tr|G7JDJ4|G7JDJ4_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0466300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88170768..88172978) extracted from Lotus japonicus Gifu genome v1.2.
GTAGAAAATAATAAGAATGGGGAATGAATAAAATTGCACACATGTCTAGTACTCTAGTCATACTTCAATATTCTGCCCTT TTGTTTTTTCCAGCTGCAATTCCATTGTGGTGTTATAAGATGATGAAATATGATTGGATATTTTCGTAAAACCTGTTCAT ATTGGCAGTGTATTTTTATTAAACTCTTAATATTATATGAGTGACAGAGGATCAGTGTCTATTTATTGTGATTAGTGCAA TCAATTACACTGATGATGTGAACTTTATGGGTGAATGACAGAAAAGTTACCATACTCCATAAGGATTCTCCTTGAGTCTG CCATTCGTAATTGTGACAATTTCCAAGTCACTAAAGAAGATGTTGAGAAGATTATTGACTGGGAAAAGACTTCTTCTAAG CAAGTTGAGATTCCTTTCAAGCCTGCTCGAGTTCTCTTGCAGGTACCTTTGTCAACCTCTGGAATCTGGACACAGTGAAA TAGTTAGTTATATTAGAATGAGTGGTGCTAAGTACTATGTTTTTTTTCCTTTTGAACTTTTTACATTTCCTCAGGATTTT ACTGGAGTTCCAGCTGTTGTTGACCTGGCTTGCATGCGAGACGCTATGAATAAGCTTGGCAGTGATTCAAATAAGATCAA TCCTCTGGTATTCATCTTTCTTGTCACTTGCATGAGTTTTTGTTCGTTATGAATGATTGAATTCATTGATAGCAGTCACC AACGAGGTTTCTAATTTTTGACCATACATGAAACATCATTGAGATATGTGGGCGAACTTTATATTACTTCAGTAATATTA CATCATTAAACAGTATATAAAATATAGAATCTCATGTATTACTTTAACCAAAAAGTTAGCTTTGTTCTGTATTTTTGACA TACCCAGGTTAACCATTTTGGTAGTCGGTACTATATAGCTGCCAAAAGTTCTGCAATTGATATAAGACTGAAATAGGGAA CAGTATCTGAAAACTATTTGCCAATATGTTTATCTACCCTAGTTTATTGATATAGCTTAAGCTTTTAATGGAATTTGACA ATTTTAATATATGGGTCTGAAGTACTGTTCAAGTTAGAACTAGTTCATACTGTTATCAAATTGTAATTATTATACTTAAA TTTGATTAGTTCAATGACAAACATTGTTTCATGAATAACTTTTGAAATTTTAGATTGTATAATAGTGAGAGAATATGATT CTGTTAGATGAGCTAAATCGGATTATACCTGATTACTGTGTGGGATTTATTTTAAATTAGGTTCGGCATCAAAACTGGAT TTTCAGAGGTTCAGTTACAACCAAATAACCACGGGAAAATTTGATAACTAAATCCATTCTGCATGATTATGTGGTTTTTG AAGTTTGAAAAACACTCATATATTTTCCTCGTATTTTATGTTTGTTAGAGGTGGTTCTGAGTTGTAATTGTTGGCAGGTA CCTGTTGATCTTGTTGTTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAAAATGCGGTGCAGGCTAATATGGAACT TGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGATCAACTGCATTTCATAACATGCTTGTTGTTCCTC CTGGTTCTGGAATAGTACATCAGGTAGGTTTGGAAGCAGACATGCAAAATGACTTCCTTTCATTTACATTCTTTCTATTG GTAATATTGGGGACTTATGATTTTATGTCTTGAATTCTAGGTCAATCTTGAATATCTTGGGCGGGTTGTTTTCAACAACG AGGGCTTACTCTATCCTGACAGTGTAGTTGGGACCGATTCACATACAACTATGATAGATGGGCTCGGTGTTGCTGGATGG GGTGTTGGAGGTATTGAAGCCGAGGCAGCAATGCTTGGCCAGGTACATTGCGTTCTGATCTTGATATGCGCACTTTATGA AACACCGATGATTAATGAATATTGATGGCATCTTTAACTCTTTTGATGTGTTTGTTAATTTGCTTTATCATGAAATAAGC ATGTGGAGTAGTTTAGCTACAGTAACGGTTCTAATGCTGTTTTATGTGATACCTACAGCCTATGAGCATGGTTTTACCCG GTGTTGTTGGGTTCAAGTTAGCTGGAAAACTGCGCAATGGTGTTACAGCAACTGATTTGGTTCTAACTGTGACACAAATT CTTAGAAAGCACGGCGTTGTCGGGAAATTTGTTGAGTTTCATGGTATCTGA
CDS sequence (LotjaGi3g1v0466300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAAAGTTACCATACTCCATAAGGATTCTCCTTGAGTCTGCCATTCGTAATTGTGACAATTTCCAAGTCACTAA AGAAGATGTTGAGAAGATTATTGACTGGGAAAAGACTTCTTCTAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGAGTTC TCTTGCAGGATTTTACTGGAGTTCCAGCTGTTGTTGACCTGGCTTGCATGCGAGACGCTATGAATAAGCTTGGCAGTGAT TCAAATAAGATCAATCCTCTGGTACCTGTTGATCTTGTTGTTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAAAA TGCGGTGCAGGCTAATATGGAACTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGATCAACTGCAT TTCATAACATGCTTGTTGTTCCTCCTGGTTCTGGAATAGTACATCAGGTCAATCTTGAATATCTTGGGCGGGTTGTTTTC AACAACGAGGGCTTACTCTATCCTGACAGTGTAGTTGGGACCGATTCACATACAACTATGATAGATGGGCTCGGTGTTGC TGGATGGGGTGTTGGAGGTATTGAAGCCGAGGCAGCAATGCTTGGCCAGCCTATGAGCATGGTTTTACCCGGTGTTGTTG GGTTCAAGTTAGCTGGAAAACTGCGCAATGGTGTTACAGCAACTGATTTGGTTCTAACTGTGACACAAATTCTTAGAAAG CACGGCGTTGTCGGGAAATTTGTTGAGTTTCATGGTATCTGA
Protein sequence (LotjaGi3g1v0466300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTSSKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSD SNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFHNMLVVPPGSGIVHQVNLEYLGRVVF NNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLAGKLRNGVTATDLVLTVTQILRK HGVVGKFVEFHGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 253 | 253 | 9.4E-138 | – | |
| PANTHER | 3 | 252 | 250 | 3.4E-171 | – | |
| PANTHER | 3 | 252 | 250 | 3.4E-171 | ||
| SUPERFAMILY | 3 | 252 | 250 | 1.07E-97 | ||
| Pfam | 31 | 252 | 222 | 7.1E-82 | ||
| PRINTS | 113 | 126 | 14 | 1.1E-23 | ||
| PRINTS | 137 | 145 | 9 | 1.1E-23 | ||
| PRINTS | 166 | 179 | 14 | 1.1E-23 | ||
| PRINTS | 180 | 195 | 16 | 1.1E-23 | ||
| PRINTS | 242 | 253 | 12 | 1.1E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0466300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…