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LotjaGi3g1v0466400.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0466400
Transcript ID	LotjaGi3g1v0466400.2
Related isoforms 1	LotjaGi3g1v0466400.1
Lotus japonicus genome version	Gifu v1.2
Description	26S proteasome non-ATPase regulatory subunit family protein; TAIR: AT1G64520.1 regulatory particle non-ATPase 12A; Swiss-Prot: sp\|Q9SGW3\|PSD8A_ARATH 26S proteasome non-ATPase regulatory subunit 8 homolog A; TrEMBL-Plants: tr\|A0A0S3R0N9\|A0A0S3R0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0466400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:88180807..88183765) extracted from Lotus japonicus Gifu genome v1.2.

CTTAGTTTTATGATTTTGGTAATTGGGTTTGTTTCTGTGGAGGTTGTTTGTGAAAAGTGCAGTGCTGGTGAAGAAAACGA ACAAGAGATGGATCCAAAACTAACAGAGGTATCTCAATTCTTCGATCAATTCAAGGCTGCGTTTCTCAGGAATGACTATG ATTCCTCTTCCAATCTCCTTTCCCAGCTAAAGGTAATCAATTCCCACACTCCCCAACCCTAGCTAGCTCATCAACATGGC TGTGAATGAATTGGTATAGCCATGAATGATGAATGAATTCAAGTGTGGTATGCTATATTGGAATCATTACATTACAGTGT GTATATATATAACATATGCAGCAGGAAATTGGATGAATGAATCTACATTGTTAGTTATATGATTGCTGCAAGCTACTTGA ATTCATAGCTCTGATTTATGTGCTCTATAAGATTGTGTTTTGCAAGGACTTAACTTCTTTTTTTTGCTTTTAATTGATTG TCAGTGTAAATATTGAATGGCCTTGTTTACTTGCAGGTGTTGCTAACAGGGTTCAGAAGTCTTCCTCCCTTGTTTGAAGA TACACCTAATGCAGTTCAGGAGTTAACAATAGCAAGTAATATTATTTCACTCTCATCACTCACTCTGTTTTTCTCCCTTG TTTCGTGTCTATTTTCCTACATTCGTTTCTTAGGCCTACTTATTTAAGTTATGCAAGCAGATTTTCGTCTTCATCTACCA TATGCCTGTATCCGTGTTGTTCTTAGTAAGAGAACTTTGCTATTTGGTTGTGGTGGAAGTATAACTAGCCTTTATTTTAC AGTATGGCAAATGGTTAATATGGCTGACTGTATATTAGAGAAGAAAGAAAGAAAATAAGTTTTTTATTTATTTAAAATTG GAAACTGTTAGATGCTTCGAAGAAATGAAAAGCGTGCTCGATTGATCAAAAGTGTAGAAAATTCTCTCCTGACTGAATCA TATTGGAATGAGATAATAACTACTTAAAAATTAAAAAGAAAACAAGTGCTGCTAAGGAGTTCTGTTTCTGATATGTTTTT TTGTTTGTTTGTTTGTCTGTTGGTGAAACTTTCAGGGGATATATATGAGCATGCTGTTGTCCTGAGCGTGAAAACCGAGG ATCAAGATGACTTTGAGAGGAATTTCTTCCAGTTGAAACCTTATTATACAGATGCCTGGTAACTGATTGTTTCCCCTTTG TTTACATTTGCAAAATATATGTTTCCTGATCACTTTAACTGAAGTCGTATCATTATCAGAGTGTGATTCTATGTGCAATT CTTTTTTCTTTCTTGTTGAGGTCATGTAATTTATTGGAAATTTTCCTGTGTTGCAGTAGTCGTCTTCCACCATCTCCGCA GGAGTACCCAATACTAGGTCTGAACCTGTTGAGGCTACTTGTGCAGAATAGGATAGCTGAATTCCATATGGAGTTGGAAC TGCTCTCATCTTCTGCTCTAGAGAATCCATGTATTAAGCATGCTGTGGAGCTGGAGCAATCATTTATGGAAGGAGCTTAC AATCGCGTATTGAGTGCTTGTCAGACAGTGCCACATGAGACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG GTAATTTTTGTTATCATTTTATATATAGCCTAGAAGAAACTGGAACTCTTGCTTGATTTTTTAGTTATAGATTGTTAATT GTTTAGGATGTGTTCTCTAAACTGATTTGTATAATATTGTTGCTAAATTTTATGAGTAATTTGTAGTCTTGTAATTCTAT TTCTGTTTCCTGAAATGTCAATTTGGCCAAAGTTTGATCTTTTAATCTTTTTCCACACCTCCCCAACCCTTTTTTGGCTG TATATTATTTTACCATTTTTGCATCTATGTTAATTTTTTAATTAGTTTATATATTGTCTTGAAACATTCAGACATGAAAT AGCAGGATGCAGTGAGAAGGAGTATGGCTCTCTTCCAATTAAGGATGCTAGGAAAACATTACGTTTCTCATCGGACAAGG AACTATTTGAATATATTAAAGAGGTGAGCCATGTCATGACTCTCAGTGTGTCTAGATCTCATGAGAGATCAAAGGCGTTC ATTTTGACCATACACTATACTTGGATGTTCAAGATTACTTTAATTTAATCTTGACTATTCACTTATGTTGTGTGATTAAG ACGTTCCCTCTCATCTGTATATAGTGTTTGGGTTGAACTTTTTCTCTTGACAATGAGTTTACTACTAGTATGTTTACAAA ATGGAAAATTACTCATCTTTAGTTGCGCATATCATTATGATTAAAAATTGTCATATATTGATTGCAGGAGCACCCTGAGT GGGAGATTAAGAATGGCCTTGTCTTTTTTCAAAAGGCTAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTACAACTC ATCAACCAGACACTTAGTTATGCCAGGGAGTTGGAGAGGATTGTCTGAAAAGAAATGAAATGGCTTTGTGTTTTCTAAAA TTTCTAGGTGTTTGGGTAATCGTTGCTAATACTGTCATTTGAAATTGTTTATTATTTTGATTCGATGCGGAACTCTAAAA TGGTTCATTTCTTTATTTTGGATTTTTGGTCCTCTAGATTGTTGTATTGTTTCTTTTGGTACCGTTTTCTCTCTTCCTTT TAATGGCATGTTTGGGTAATCGTTGCTAATACTCGTTTGTAATATATATGACTAAAATATCAAAGGTGTTGCTGCTCTTT GGTTTCTCATATATCCACTTCTCTGGTGGGTTTGATCCTCATGATCATTTCTTATATACACAGTTAAGTTAGCAATGCCA TGGTAGGGAGATGCAGTCTTCGTGACATATATCTGCAATGTCCACCCTCCAGAACTCTGCACAGCATCATTCCTCCTAGA GTTTCAAATTGTATGCAGAAGTTTTTCCCTTTGTTACCCCAGGTAAAGGAATGAAGAAAAGAAAGCAAAGGAGGACATG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0466400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTTTGGTAATTGGGTTTGTTTCTGTGGAGGTTGTTTGTGAAAAGTGCAGTGCTGGTGAAGAAAACGAACAAGAGAT GGATCCAAAACTAACAGAGGTATCTCAATTCTTCGATCAATTCAAGGCTGCGTTTCTCAGGAATGACTATGATTCCTCTT CCAATCTCCTTTCCCAGCTAAAGGTGTTGCTAACAGGGTTCAGAAGTCTTCCTCCCTTGTTTGAAGATACACCTAATGCA GTTCAGGAGTTAACAATAGCAAGGGATATATATGAGCATGCTGTTGTCCTGAGCGTGAAAACCGAGGATCAAGATGACTT TGAGAGGAATTTCTTCCAGTTGAAACCTTATTATACAGATGCCTGTAGTCGTCTTCCACCATCTCCGCAGGAGTACCCAA TACTAGGTCTGAACCTGTTGAGGCTACTTGTGCAGAATAGGATAGCTGAATTCCATATGGAGTTGGAACTGCTCTCATCT TCTGCTCTAGAGAATCCATGTATTAAGCATGCTGTGGAGCTGGAGCAATCATTTATGGAAGGAGCTTACAATCGCGTATT GAGTGCTTGTCAGACAGTGCCACATGAGACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGACATGAAATAG CAGGATGCAGTGAGAAGGAGTATGGCTCTCTTCCAATTAAGGATGCTAGGAAAACATTACGTTTCTCATCGGACAAGGAA CTATTTGAATATATTAAAGAGGAGCACCCTGAGTGGGAGATTAAGAATGGCCTTGTCTTTTTTCAAAAGGCTAAAGAATC TGCACCTTGCAAAGAAATACCCTCTCTACAACTCATCAACCAGACACTTAGTTATGCCAGGGAGTTGGAGAGGATTGTCT GA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0466400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MILVIGFVSVEVVCEKCSAGEENEQEMDPKLTEVSQFFDQFKAAFLRNDYDSSSNLLSQLKVLLTGFRSLPPLFEDTPNA VQELTIARDIYEHAVVLSVKTEDQDDFERNFFQLKPYYTDACSRLPPSPQEYPILGLNLLRLLVQNRIAEFHMELELLSS SALENPCIKHAVELEQSFMEGAYNRVLSACQTVPHETYVYFMDLLAKTVRHEIAGCSEKEYGSLPIKDARKTLRFSSDKE LFEYIKEEHPEWEIKNGLVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12387 View details on PTHR12387 Search for proteins/transripts with this domain View external data on PTHR12387	27	293	267	1.1E-114	IPR006746 Show description in modal box View details on IPR006746 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.25.40.990 View details on G3DSA:1.25.40.990 Search for proteins/transripts with this domain View external data on G3DSA:1.25.40.990	31	264	234	4.0E-77	–
ProSiteProfiles	PS50250 View details on PS50250 Search for proteins/transripts with this domain View external data on PS50250	105	277	173	21.14	IPR000717 Show description in modal box View details on IPR000717 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF10075 View details on PF10075 Search for proteins/transripts with this domain View external data on PF10075	132	268	137	1.6E-24	IPR033464 Show description in modal box View details on IPR033464 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005838 View details of GO:0005838 AmiGO InterPro QuickGO	Cellular component	Proteasome regulatory particle	A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.	Subterm of View details of GO:0032991 View details of GO:0044424 Part of View details of GO:0022624
GO:0006508 View details of GO:0006508 AmiGO InterPro QuickGO	Biological process	Proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.	Subterm of View details of GO:0019538

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0466400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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