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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0466800 |
| Transcript ID | LotjaGi3g1v0466800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein; TAIR: AT2G05630.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C; TrEMBL-Plants: tr|I3ST09|I3ST09_LOTJA Autophagy-related protein; Found in the gene: LotjaGi3g1v0466800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88228491..88237210) extracted from Lotus japonicus Gifu genome v1.2.
TTGTGACAATACTTACAAGTCACTGGGAAAAAAAAAATTACACTAGTCGTACATGAAAATTATACTCTTTTGTAGTGGCA AAATTTGAAATTGAGCAACATGTTTGTACATATTTTTGTCAACTCAACTCAAACCGCTTTTCTTTACATGAAAGTTACTT GTTAACTTCCTCATAAAATTACTTCTTCCCATGAGAAACTTATCAATATTTATTACAAGGAATAAAAAACAAGCTACTCA CAATAGTTTTCTAAGCTCACCATTAGAAATGTTGCAGCAAACATACCCATAATGTCTTACTAGAATTGATTTAAAACTCA AAATGAGTTGCAAAAATTAAACCAAACACATCAGGAATGGTAGCCACAAACAAGGACAACACAGAGTGGGTCTGTGTGCT TGATACTTTGGATCCATTATTCCATATATTAGGAATTATTGATGCACCCATATATAATATTAGTATAGTAGTTAGCCACA ACATGTGAGAAGGACTAGACCAGTCCATTAAATAGTTCTGCTGCGTTCTCTTGATGAGAAGGCATATATACACATGAGGG AATAAAATTTCCTACATTTAAATTTGTCATGTGTACATTAACGTTACCTGTAGGCAATAAACAGTATGCAAAACCTACCC ACCACACTGTTTCAGTTACCCACTACACTGTTTCAGTTTTCTGTTGTGTAATCGGGATCATTTTCTAGTTTTGGGTGATG GCTATCGTGGTGCAAGGATTGATTGGAGCTCTCTTTTTTTGTTTTACGGTTTGGGGTTTGGGTAGGTGTGTCTTTTTATT GGGGGTGGGCATGAGTTTTGTTTGGTTGGTTGCTGGATGGGTATTTTGGTGTGTGCTGGCTTCATGCTTTTGTTGTGCTC TAGTTGCTCAAGCTTTTGCATGCTAGTCTTCTAGAGTGTTTTGTTTTGGCTGTAATTTTTTCCTGGTTTTTCTTTTCTTT GTATTTGGGTTTAGCACCCAATACAATATTTGGCCTATAAAAAAAACACAACAAATTATTTTAATTAAATAAACATATAA ACTGATCAAATAAACTATAATTGAACATAAATGACTTTCTGAAAACACTCTTCCAACACAGTATTCATTGAGAAAATGCT CAACTTCAAGAAACTTTTTGTAAAAAACAATAGCATGGAACTAACATCATACTACTTTAGTGCTAAAAAAACATCATACT ACTTTAGAGCCAATTTGGATACCCGTTAGAAAGTATGAAAACAGGTATCGAAACGAGCTCTTCGTTTCAAGGACCTTATC ATGTGCGACCTGTTTTGTGATATTCATCATAGAAAAAAGAAGTCTAATTGTAAAATGCATTTTACATCTTCAAAGGGAGT AAATTGCAAGTTGGTTCATGAGTCTCAAAATGAAGGTAAATAAATGAAAAGGGTACTTATTGAAGACCAGAAGACTAATA CATAAACAAAATCAATTGTAAGTCAGATGAAAAATTTGACTAGGAAGATTGCAATTCTAGAATCCCCTGGGTTCAATTTA TCAGTATAAATGAACCAAAACCTTCATCCTGATAAACTTTAGTTTCAACAAGGCTTTGTGATTATTTACTCCGGACTTTA ACTTGCAAACTCCAGTTAACCTTGCCCTCAGGCAAAGGGATGGACCTGGGTAAACGCAGTGGAACCTCATATTCTCCCAC GGTAGATAATGGTGATGGAAGATGCAGGTTTTCAGGTGCAATGTTTACACAGAGTTGTCTTGCCACCTGAAAATAGCACC ACATTTCAAAGTCAATACCAGAAAAAGAATGAGCGGGAAAAGGAAATTGACCTTTGACATATCTGATATTATTGTGATGC ATTAGAAAAAGTTTATGAGTTTATCTTATTACATAAGGACTTAAGTGAGGCTTAACCAAACCTTGAAAATAGCTTATAAC CTACCTATAAGCAACAAGTGTTTGGTTAATTTTATGAAAATAGCTTACATCCTACATTTTTTTTATAGGCCAAGTCATTG TATTCAAAACAGCACAATGGCATGTTTATGGGAAGGAAAAGAAAAACAAGTAAAACATAGTGACTGGAAAATCTGAAATT AATTGATTTGATGTAATTAGAAGACATACCTTAACCCCTATTGATAGGAACATTAAACTCCAAACACTAATTAAATAAGA AAACAAATCATGAAATATGGAAAACATTCTAAAGAATTAATCTAAGGACTCTTAAATATTGTAATGTATAAAATAATATT ATGAAAGTTCTCAACCTATTCTAATATGAATCATTATGTATTTCAAGTTTCAAAGAATAAAAGCAAGAAAAGCACATTAG CAAATGACACAAACTTCCACTACACATTTTCACTTGGCAGGAACCTCCATTGAAGAAATTGGGTTGGGAAAGGTGAAATC GAGCTGCTGGTACAGCTGCTTCGCTGAAACCAGCTTGTGTTGGGGTTTATATATGAAAAGGAAAAGTTGACCTAGCTTGA TGGATCACTGAATTTGGACTCGCATACCTCATTCCTCCGTCAGCAACCCCACACTTAATTTCCTTCGAATATGAGGTAAT TCAGCTAATTGGTAACCCAAGTTAATAAGCCTAAAATTTGGCACAGTACGAGGGGACACATGATGAAGACATAGAGGGAA GAATTAGTTATAGGAAATGAAAAAGAGCGAGAAGAAGAGGGGATAGAGCGCAGAAAAAGTTATTCGCAATAGGGCGTAGA AAAAGTTATTCACAGCGCATTCAGCTACTGTGTTGTTTAGAATCTCAGTTCTGAGAATTGACAGATTTATAATGTGGTTT CATATTGCTTTTCCATACTTGTATTTCTTTCCAAATGAAATTACATACTATCACTAAATTTGGGAAGTTCATTTCCTTAA GTAGTATTTGCACAAGATTGGATGATTGTTTCTCTGAAATCTAAATCTACAAGCAAATCACATGGCCAACAGGCCAAGAA AGTTTCTCCTGAAGCATCAAATACTAGTTGCAACTTGCAAGTATTTCTTTTTAACACACTATATACTTATTTCTAAATTT GTTTGTTAGTTACAACGAAGAACACATTAAAATTAAGAAGAAAAAATATTACCTCAGCCACAAGTACTTCTTTTGTCACA GGTAATCGTATTTCCAAGGGTTCATCTTTTGATGCACGTGCCTTAGCTTTTTTAACATCAATTAACCTCCGCAAGACCTA TTAGATGATCACATTCAATTCATATTAAAATAACAAATATTAATGGGTGAGTTTTGACATGAAAGACTATCAAAATATCA AGTAAATGTTTCTAGAAAAATGCTAGCAACACTGACTTTAACACTCATTAATTCGTTAAAATTCATGTGGGATCCAATAA AAATATGGGGCCCCACTGCCAATTTAGTGGGATCCATATGAATTTCAACCAATCAAAGATTGTTGAAAATAGAGTGTTAG AGTGAGTGTTGCTAGCACTACTCATGTTTCTATTATACCACTCTAACAGAAACAATCTTGGGGAGTATATCAGAGTCATA GTTTTGAAAACCAAACCAAAATGGCAAGTTAAATTTTTATCTAACTTAGATATTAGTTTACTACTTAACATATTATATAA GAGTCAAGATCCAATACCATCAAATGTAAGTCTCGGTATGCTTACACCACCTGATAATTTTTATTGTTGAATTGAAAGTT CTCAGGAAGTAGATCAACTTTATAAAATTTCATACAAATCTAAAACTACTTTATATTCCACCACACCACTATATTTTAAC ATATAATATGCTACTTAAAATATATAAACAAAATTCTATTAGATTACATATCAATGAAAACCTAAATTATCTAAAACTTT GAATACATGATCATCAAGAGAATTTAACATGGTTCAATTGCCGGTTTACCTAACTCTGAATTCTACAAAAAGTTACTCGA TGATATAACTGTTCAACACTTAAACCTATTGTCAGTGGATCGTAACTCATCATTAATATTTAAAATATATGATTAATCGT CACCAGTTCAACTATTTGAGAAGGCAAATAATTTCCCCAAAAAGGATAGGAGAAATAGTTCCAAACAGAAATGAAAAGCT TTGAAGAGTAAGCTACAAACCAGCTTAGCCTTATCAAGACGAAGTGCGGCTGCTTCATACTCTTTCATCAGATCTTCCTT TGACTCTTTAACTACAGTAACGTCTTCTTGTTTTTCTTCTTCAGTAGGTTGATAAATCTGAAGTCTCAACAATTGTAGAA GACAGAGTAAGTTATGAAGACTGGCTATGTGAGTATGCAAATGTTTATGTGCCAAGCAATGTTGACAATATGGGCTGCGC CCACATTCAGATAAACACAAAAAGTAAAGGAAAAGGATGCACTATTGTCATATCAAGAACTTAAAAAAGTTATTCTAGAA GATAGAAAAATGCAGAGAACTGAAAGTGGTAGATAGCATAGATGAATAAGAAACAGAGATCAATGGCATTGAACAACCAA TAGCATAGATGTGTAAAATGAGACTAATGAAAGGATGAAAAACCTTGCGCTGCTCAGTGAGGAGATAAGCAAACTTATCA ATGTTAGGGACAGCGAGGAGCTTGGGCATTAGGTGGTTGCGAAAATATCCAGGAGCAACCTTGACCGTATCGCCTGCCTT TCCAAGCTTATCTATGTCCTATAAATTAGAAATTGAAAATATCAGATATTTGAATAAAATTTTATCCCAGTAATTAAACA TTAGGAGTCAAGATAGATAATTACAGTTGTAAGGATGACTTGGAGCTTCCTGTTGTATCGAAGTCCTTGAGACGCATACA GAAGTGGGTTTACGACAGCACTATTAGAACTGGAATCTCTAAATCTGATGATCTGCCTAACACCAAGTCTTCCATATTGA AGATAACCCATTCAGATTCAGTCACAACTTTTCTCTGTCAAGATTGAAAACAAACAATTATCAGTATCAAACCAACAAAT TCCATTTCTTCGAATAGATGGAAATGGATCAAAAAGTAGGATAGAAAAGGAAAGTTTATAGACAGAAATGAGATACATAA GAGATACAAGAAAAAAGATACGAAAATATGTATATGCAGATTCCTCCAAGTGTTTGAGAGATTTGGGCTCTCCTCCCCAT ATTTTACTCCAAAAGGACCAAAACCAAAGACCCTTAACGATTTATTCCCTCCTATTACTTATACTCTGTAGATCTCTAAT AGAATTGGAATATAAAAGAATATTATGTATTATTGTAATGAGTCTTCAATCCCTAACTTGTGTACCTGTGGGGTAACTGA ACAGAGACAATAAGAATGAATATAGTAGTATGCTAGGTGTTCATGAGACTTAGAGCTCTCCCACAAAAATAAATTAAAAA AATCTAAGCATATACAGAGACAGAGAGAGATCGTGAAAAAGGGCAATGAAGGTTCAGATTGCTTGCATGTTTGCTCGTAC CTTGTTGTTGGTTGATGAGGATTGAGGAAGAAGAAGATGGAGATTTGATTTGAGTTTGAGGGAGAGAAGGCAACAACGGT GGTGGGCTGATGGAGCAAGGGCTTTTTGTTGGGTCGGGTTGGACTTGTCTTTCACTTTCACTTTCACATTCACATCACAT ATACATAAAGAAAAAAACTTGGCCGGCACGTGTCAATGGATGGGGGTTCTTGACACGCACGCCTTCATATAAAAATATAA AAATAAAAATAAAAATAAAAAAAAAAATAAAAAAAAAATAAAAAAAATAAATAAACTTCCTTTTTCTTTGACGGAGGTTT CTTCTTCATCTTCTTATCTGATCAATCAAGCAAGCAACACATCTTCTTCTTCTCTCTTTCGCTCTCCTCTCTCTCTCTCT CTGGTAAGCAACATCTACTCTTCAATTCTAATTGCGATCCTTTTTCCTTTTTATTCGTCAATCGTTTTCGCTCCTCAATT CATCGCTACCCTCGTACCAAACCCTAATTCCATAATTGGTGCTGCAGAATCATCGCCATGGCTAAGAGCTCATTCAAGAT GGAACACCCACTTGGTTCGCTCCTCTCTTAATTTACCAATTTTTTGTTCAATTGTTACTGTATAGTGCAGTTTTATGAGT TGATCAAACTTGATGCTTTTGGGATTCTCGGGTAGTAATCTAACTGTCTAGGGTTTGGTTTCTATTTTTTTTTTTATTTG GGTGTTTAACTATGATGTAAAGTTTGTATTTTTAAGCACCATTATCACTTCTTCCATGAAAATTGAATTTTTACCAGAAA TTTTTACTCTATCAAATGCCATTGTCTTGTCTTAACTACATATTTTTGCTCTTTATATTTAGTTTAGAGTTTAGTATAAA CAATGACCTATGTTATAGCACTTAATTATACTTTCCTAAGTGCATGTAAACTTGTATTTAGTTCACCTATTGGGTGATTT AGGTCCAACATTTATCTTCTCTAATATGTGCAACCATTAACATGCCAGAAAGGAGACAGGCTGAAGCAGCTCGCATAAGA GAGAAGTATCCTGACAGAATTCCGGTAAGACCTGCTTTCTGCTGTGCTGTCTGTGTGCATGTGCCATTTTAATATCATTG GATGCTTATTATTTTGGTTGATCTTGTGATGTAGGTTATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATA AGAAAAAGTTAGTTTCTTCTACTCTTTGGGAAGTGATATTGCAAATATTGGTTCAGTTTATTTAATCCAATTTTCGTTAT AACTATTATTACTTGTTTCGTGAATATTTCCCTGCATGAAACTTGTCCTGCTATGTCTGGTTGAAGTTTTGAATGTATGG TAGCTTTACTTTGAAATTTGAAAAATGTAGACACTTATGGTTGCTTATGGTTCAACTTTGAACTTAATACATGATGAGAA ATTATAGTGTTGTGTGATCCATGTAGAGACATGGTTTGTCGCTGGCTAAGACCTGTCGTGTGTATTTTCTATTTATGCAT GTAGACGAAACCTTAATGCTCTTGGTTTTTAACAATGTAAATAGAATGGAAACTGTAGAAACAGTCTAGTTTGATCATAA AGTGAGAACAGGTTTTTGTTAAGACTTGGGTGTTAATAATTGAATGTATCAGAAAGTTGAGACTTCATGTCCCAAAATCT GTGTGCATCTGCATTATGTACTTGTTTGGGTTGGAGCCATGTGTTATTTTAGTAAGTAGTTAAGTCTCCAATGGCATTTG GCTTTTGTGGTACATTCTTGCAAAACGTAGGAGGTATAACTCATAACTCACTGTCTTCTCACCTTCTAAAATCAAAAGAA AAAAATGACCTTGGAAACTTAGTGTATATATAAGTTTCAGCCAATGTGAAAATGTCCTTTGGGACGTATGACTGTATGTC TGGGGTGTAAGACCGTAAGCCAAACATATTTTTAGTACACTAAGTAACCTGGCTGGTGGATGGATGTCTAGGATAGATAT AGGCATTTCGACATGCTCAATGTTTTCATTTACCTCTTTTGACTTCAATATTGGATGCGTGAAATTCTTATTACACTGAC AATTATCGGAATGTTCTATTGTGTTGTGTGGATACTGGATACATTTTTCATCTTTCATCCCTTGTATTTTCTTTATTGAT TATCGTTCCATTTTGGATATATATAGGTATCTTGTTCCTGCTGATTTAACTGTTGGCCAATTTGTGTATGTGGTGCGTAA GAGAATCAAGCTGAGTCCTGAGAAGGCCATCTTCATTTTTGTCAAGAACATTTTGCCCCCAACTGGTAATATATGTGGAT TTTGTTCATGTGTATGTGGTATATATGTGAAAATTTTGTTATTTATTGTAGTTTTAACTGTAGTTGATTTGTGAACTGAG CTGTGGTTTTTGTTCATGCAGCGGCCATGATGTCTGCAATTTATGAGGAAAATAAGGATGAAGATGGATTCCTTTATATG ACTTACAGTGGGGAGAACACATTTGGGATGATGATCTGAAATAATTCATAAATCATAGCACGATCATGTGAATAGAGCTT AATGAAAAATGACCATTATGAAGAAGTCAGCTTAATTGTAAATTCTCTGGTTTGATCTGGTTCTTGTAAAGTTCATTAAC TGATTGCTTTCAATTTCTATCGTTTCTTGTACCGGTACTTATTTGAAAATTGCCTTGTGTTCACTATATTGCTAAAGTTT AAGGGTATGTGCTCTTTAAAATGTTTTCTCATTTTCATTCTTCTTATTTTCATATTCGAAAAGTAATTTTCATGTTCAGT TTTTAAAATTAGACAAGGGGGTTTTCAAACTTTTAACCGCTGTCAAACCGTTGACTCAGTGATCTGGGGATCTCTGATGG GGTTACCTTTAGGTCAGACCAGACGATTGTTTCAAGCTCATCTGTATGCAGATTTAGTAAAATGAGGCTAAATTGTGGCA TTTAGTGTGTTTAGAAAAGTTTATTTGAATTTTTTTTGGTACATAAAGTTTATGAAGTGTGGCAAACGACTAGGTCAATG AAGTCTTTGTTTTTTTTGTGCTTCGGAAAATAGTGAATGAAGTCTTTCAAGACTACAGAGTTTTATGACTTTCAGCTTTT CATTTAATTAAATTATCAGCACATTGTAAGTGACGAGGTTTGGAGCATGTTGGGCGAGTTTTTGCATTGAGTACATCTGA TCCAGCTTTGGTTTTGAATGGGTTAATTGCTAATGTCAAATATTCAAAAACATTTAAGAAGTTTTTTTTTTTTGAAACTT
CDS sequence (LotjaGi3g1v0466800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAGAGCTCATTCAAGATGGAACACCCACTTGAAAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCC TGACAGAATTCCGGTTATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTG CTGATTTAACTGTTGGCCAATTTGTGTATGTGGTGCGTAAGAGAATCAAGCTGAGTCCTGAGAAGGCCATCTTCATTTTT GTCAAGAACATTTTGCCCCCAACTGCGGCCATGATGTCTGCAATTTATGAGGAAAATAAGGATGAAGATGGATTCCTTTA TATGACTTACAGTGGGGAGAACACATTTGGGATGATGATCTGA
Protein sequence (LotjaGi3g1v0466800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIF VKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGMMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 119 | 119 | 1.5E-79 | – | |
| Gene3D | 1 | 118 | 118 | 2.3E-61 | – | |
| Phobius | 1 | 75 | 75 | - | – | |
| PANTHER | 1 | 119 | 119 | 1.5E-79 | ||
| SUPERFAMILY | 3 | 117 | 115 | 1.88E-44 | ||
| CDD | 12 | 114 | 103 | 9.47898E-72 | – | |
| Pfam | 14 | 117 | 104 | 5.8E-52 | ||
| Phobius | 76 | 96 | 21 | - | – | |
| Phobius | 97 | 120 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0466800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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