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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0468000 |
| Transcript ID | LotjaGi3g1v0468000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT2G21100.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q84TH6|DIR23_ARATH Dirigent protein 23; TrEMBL-Plants: tr|A0A151S0B9|A0A151S0B9_CAJCA Dirigent protein; Found in the gene: LotjaGi3g1v0468000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88363053..88364236) extracted from Lotus japonicus Gifu genome v1.2.
CAAGCCATTCTCACAAACCAAACTCATCAACATTTCTCATCATCATCAGTGTCCCTCAGATATTTTTCTTCCAAAAATGT CACCACCAATCAAATCCTTGTTTCTCTCATTCCTTCTGATATCCACCATAGTTCATGAAGTTAAATCTCAACTTCCACCA CCCCAGCCTAATCAAACAACCATAGTCTTATACCTGCAAGATGTGGCAAAGGGGCCTAGTGCAACAGTGACCCCAGTAAT TGGCATCAAGGATAAAGATTGGTCCTACAACACATTTGGAACTATATTTGTAGTTGATGACCCTGTCACATTTGGTTCTA GTCCTAACTCTGCTTTAATTGGCAGAGCACAAGGCACACTCACAGTGTCTTCATTGGATGGTGCTAATGTGAATGTAGTG CTGTCAATTCTGTTCACCAATTCACAGTACAGTGGCAGCACCATTGAGATTCAAGGTGTTAGCCGTCAACATGAGAGTAG CAGAGAGCTCTCTGTTGTGTCTGGGACAGGGAAATTTCGGTATGCAAGGGGGTTTGCAGTGTTGGAGACTCTGTTTTATG ATGCTCCAACTGGTCGTTCTACCATTCGATTGACTATAACAACAAATGTACAATCTTAATAAGAAAACTAGTAGTGCTTG TTTATTATGAATGATGTTAATTCAGCTACATTATGTTATAATGAAGGAATATGTTTACATCTTCTGTGATTCCTCACACT GCTAGCTTTGCATCATCTTCAACATTCTAATTGGTAAAACTACACATAATGGAGTATTGAGATTTGGTCGAGTGCAAAAT AACAAAATATCCCAAAAATTTAAGTTGTTTGGTAAAATTGATATTAATAATTTTATATTATTATTTTTAACACTGAGAAT TGGGTTGATTGAGATTTGAGAGTACTATGCAGAGGAGGAGGCAATGCGTAGACTGTGTGAGTGTGCAACATTCCAGGTTT CTGTTTTGTCATGTGTGATATGATGCTTATGTGTGTTTGTTTGATGAAAATATAAGAAAGAACTTTCTTATAAGTTTGAG AGTGTTTAAGAGTTGCGACCCCAATTGCTTTAAGGTTTTTGGGCTAAGCTTCTCCTTGAGCATCCTCTAGTCACTCTCGT GGGACTACATCAGTAAACAAGCTCGCACACATCTAAATCCAACAAAGTCTGATGTGCTTTTTTT
CDS sequence (LotjaGi3g1v0468000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACCACCAATCAAATCCTTGTTTCTCTCATTCCTTCTGATATCCACCATAGTTCATGAAGTTAAATCTCAACTTCC ACCACCCCAGCCTAATCAAACAACCATAGTCTTATACCTGCAAGATGTGGCAAAGGGGCCTAGTGCAACAGTGACCCCAG TAATTGGCATCAAGGATAAAGATTGGTCCTACAACACATTTGGAACTATATTTGTAGTTGATGACCCTGTCACATTTGGT TCTAGTCCTAACTCTGCTTTAATTGGCAGAGCACAAGGCACACTCACAGTGTCTTCATTGGATGGTGCTAATGTGAATGT AGTGCTGTCAATTCTGTTCACCAATTCACAGTACAGTGGCAGCACCATTGAGATTCAAGGTGTTAGCCGTCAACATGAGA GTAGCAGAGAGCTCTCTGTTGTGTCTGGGACAGGGAAATTTCGGTATGCAAGGGGGTTTGCAGTGTTGGAGACTCTGTTT TATGATGCTCCAACTGGTCGTTCTACCATTCGATTGACTATAACAACAAATGTACAATCTTAA
Protein sequence (LotjaGi3g1v0468000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPPIKSLFLSFLLISTIVHEVKSQLPPPQPNQTTIVLYLQDVAKGPSATVTPVIGIKDKDWSYNTFGTIFVVDDPVTFG SSPNSALIGRAQGTLTVSSLDGANVNVVLSILFTNSQYSGSTIEIQGVSRQHESSRELSVVSGTGKFRYARGFAVLETLF YDAPTGRSTIRLTITTNVQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 176 | 175 | 8.0E-77 | – | |
| PANTHER | 2 | 176 | 175 | 8.0E-77 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 180 | 156 | - | – | |
| Pfam | 34 | 175 | 142 | 5.2E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0468000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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