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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0468800 |
| Transcript ID | LotjaGi3g1v0468800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0468800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88441822..88447859) extracted from Lotus japonicus Gifu genome v1.2.
AGACTCGTTCCCCTGCAACGCAGCGTGTGGTTTTCCCTGCTGCTTCCGCCGCCGTTCTCCTCCAGTTCACTCCGCCGGCA GCCGCGTCTGTGTCATGGAGGTAAATCGAATGAATCTTGTTCGTTGATACGTAATTATTTGATTTGATCACACTTGTAAA CCTAAACCCTAAGAATTGCGCATTTTCTGTTGTATATATTTTGATTGATTCAGATTGAAAACCATAAGCAAATGATGCAA AGGGATGAAGGTTTGATCACTGAAATCCTGTTGAGGTTGCCGGTGAAGTCTCTTGTACGCTTCAAGGCTGTGTGCAAGTT CTGGCGGTCTCTCATATCCGATCCCCACTTTGCAACATCACATTTTGAACGTGCTGCTCCTAGACTCTTGATCCGTACCG ATCATGGCATTCGAACCATGGACTTGGAGGAATCACTTCACCCTGATCGTATTTCTGAACTAATTGATTATGACTTTCCA TATACTGTTCCCTATATTGTAGGTTCGTGTAGAGGCTTTCTGCTAATTGGCTATGATCGAGGTAGAAGTCTCTCTATATG GAATCCATCCACACATGTCCACAAACCATTACCTGTTGACGCCAATGCTTATGAATATGATCATATGTATCCATATGAAT ATGGATTTGGTTACGATTCATCAAAAGATGACTACCTCGTGGTTCGAGTCCCTGGTGTAAAACCAGGCTCATCTACTAAT TTTGCAGATGTGCAGTTTTTCTCATTGAGAACTAATATTTGGAAATATACTGAGAGTGTTGATTTGCCTTCTTCCTTGGC CTCTACTAAGGGTGCTGATTTACCTACCTTTACCACTGTTCCAGATCATAGTGTTGGGTTGCTCTTCAACGAGGCCATTC ACTGGGTGGCTCAGAACTTCGTGGCTGGTCGTGTGACGCATTTTATCATTGCCTTTGATTTAATGGAAAAGAGACTTTTA GAGATACCCCAGCCCAAGCCTGATGATCTATTGCCCCAGCCTGATGATCTATTTCCCCAGGGTTTTCTGTTTTATAGATT GTGGGTGCATGGAAGATTTTTTAGTCTAACGGCTTTCCAGCAAGATACAATTGAAATATGGGTTATGAAGAAATACAAAG TACAATCATCTTGGACCAAGACTCTTGTTGTTCTGTCTTCGAAGCTCCTTTACCCATTATGTTCTACAAAAGGTGGTGAT ATTGTTATGTGTTCTGGAATAAATCTCACAAAGTATAGTGATGAAGGACTACAAGGAGATCAACTAGAGAATTTCGACCA TTTTGGTCTTGTCAATGAATCAGTGCCCTTGTATACAGAGTCTATGCTTTCGCTCCCTGATGTTAGTGGGTGAAATCTAT ATATATTTAAAATAAAGAAGCTGGTTTTGCGGCCTAGAGGCAATTTAGTAATTCAATATTTCGTTGTACTACATTCCTAA TTGGACTATGGTTATTTTAGTAGAAATACAAAATTATTTGTCATATATTCAATTAGAGTCGTTGGTTCCATCTGCCTTTT TGCCTTCGAAAACTATGGTTAGGCACTGAGATTCAATTTTATATTCTTCAAAGCATGTTGAAAGTTGTAAAACCTTTGTA GGTCTTTTCATTCACTATTTCTCTCTTTCTTCTGATTTTAGTTTTTGTTTCGTCATGTCGTTGACGTTTCAATTGTTTTC AATCGCTTTGTTTCTCATTCAAGAAATGCTCGATGATGCAAGCTTGGGTTAGAGGTGAATCCTGTTCTAGGCACTTCTTT GATTGATTTATACACCCAAGTTTGTAGAAGCATACAAATTGCTTGAATTTGTCAAGGGTGGTGATATTATGTCATGGATA ACGATGATTTCTTCATTAATTAAAACTAGTAAATGGAGTGAAGCTCTACTAGAAATCTATGTCAAGATGATTGAAACAGG TGTTTGTCCAAACGAGTTCACATTTGTTAAACTCTTAGGCTTGTCTTATTTTCTTGGTTTGGGTTATGACTTATGGGAAG CTACTGCATGCACAGTTAATCAGATTTAGTATTGAAATGAATTTGGTATTGAAGACAGCCATTATTGACATGTATAGGAG GCTAGAGACTTTTCTCCTGAAGGTTTTTTTGCTGTCTCAGTTTTGTTATTTCTGTTTTGAATAAACTGATTCAATGATAT TTTTGGAGTCTTACTTAGCTCTTTGTTAGATGTTCTTTCTCTTTGTTACTTCTGTTTTGACTACTTTTTCAGCACTCTTT TAGTTGTGCAAGGTTACACAAGCAAATCCTTGTGCATATTAGAGGGACCCATTGAACTTACAATGATAATGTCAGTGGGG TTTCATTGCTAATCTTTTTTTATGTTTTTGATGTTTTCTATGATTAGACATTTGATGCATATGTTGTTGGCAAGCACGAT GCTCCTGGAATTTTTGTGCTTCAGGAGTGGTGGGGTGTGGATTATGAAATCAAAAATCATGCTGTCATGATTTCTCAGCT TGGTTGTGGATTTAAGGCTCTTATTCCAGAGTAGGATTACGGCACTACCTAAATTTTCTTAATATTTGTTCTTTATGTAT CATGTAGTGTTGTCATATTATGTATTTGGATCACTGATGAGTTTTTATCTTTTTCACCAGTCTGTACAAAGGAAAGGTTG GTCTAGATGTTGCAGAAGCGTAGCATTTGTTTGACGGTCTTGATTGGCAAGGTGCTGTGAAGGATGTTTGTTCTTCAGTT AACTGGCTTAAAAGTAAAACAAATGGTTCGAGGAAGGTTTGTCTCTTTTCATGAGTTGTCAAGATGAAAATTGATTATTT GTCAAAATTTCCTGTCAACTACACCATCCTTGTTAATTTATATACCCGTGTCTCAAGAGTTATTTTGTTTTTATCATCAT TCCACGGCTGCAGAAGATTCTTCGAAGACATGAACTGGCCTTGGGCCTTGGCTTAAGATTTAGTGAGTTAGTATGGGGGC CAGTTTGGTACACCTTATTAGGCATGGCGATGTGTTTGGATAGCTATTAGTAAGTCATTGGTTGAACAAAAATGTGAATT GATCTTTCATTGTAACAGGCTTTTGTATGGGGGGTGCTCTCGCTATTGCCAGCTCTGTCTTGGTTCCAGATGTTGATGGT GTTGTAGCTTTTTATGGTGTTCCTTCTGCTGAGCTTGCAGACCCTGCCCAAGCCAAGTCTCCTGTTCAGGCTCACTTTGG CGAGCTGGACGATTTTGTTGGCTTTTCGAATGTTACGGTATGAGAATATGTTTGCAACACACATTGCTGGTCATTTTTTG TCTTACTTGAATTTCCTTTAGTCAGTTCATTTACTTATATTATAGCTAATGCATTATCCAATTCAATCTCACTGTTGCAG AGTTTAGTTTAGTCTAGTTTGAGATAGTTAAAAGCCTACTAGTTCAGGTTCCTTCCAGTTCCTTTTGGTGAGGATTGGTG TGGAAAAGGTCTCTTTTTCTAATTCCGAAGGTGTGTTTGGTAAGAAAAAAAGCTAATGATGGAGGTTTGGGAACGAGAAG TGAATATTATTAGTTCTCTTGGCAAGAGAATATGTACAAAGCACTTCAGAGCCTAATGATTGTTTGGCATCTTAGTCTGT AGTAACATTGATTTAAAGTGGTCAGTATGTGAGTGATTATGTAAATTAAAATCAATTGAACTTAAATGAAGGGATATATT TGGGACTGCCAATTTATTCCCCCCCTGTTAAGATAAGGGTATGTGTAGAATCAATGTGCACTCATACTCAATTTTTTACT ACATAAGAAAGTTTTGCTTCTGTTTTTGAAGCATAGAAACACATTAAGTCATCCCAGCGTGATTCCATAGCAATTTGCTA AACAAGTTGGCGTAACCATATGGGCATGAGGTAAAAAACTAAATAGAAGAGGGGTGAAAATGAGAAGTTAATATTATTGT ATGCTTTTCTGGACCTTGATAAGAAATTAAAGAGGTAAAATATGAAAACGGAGTGACCACTAGACACTAGTTGCATTCTA CTTTTTTCTTTTACACATTTGTCCGGCGTTTGCACGCATCTTTCAATATTCTATATTAGTTTCATTTAGACCAACATTAG TATCACAAACAAAATTAATTTTCAACCATGCAGATCCATCTTCTCTACAACCTTCAGCAACTGAAATTATAACCTTCTTA TCCTTGTTATTTTCATTCTTCTTTCTGTACTTTTCATCTTATTATTCACCTTCAATACCAAGCAAAGCATACGCTAAGTA GAGTGCAGGAAGTCTTTAAGCTTTTATAATAAATTGTCCCATTTCCCCGCATACGTTAAGTACTGATAAATAATTGGAAA AAAAACCAATAGATTGTAGTCTTTACTCTTTAGTATGCTTACTGCTTGGCAACCTATTTTTTAGTACAATGTTTAATAGT ATAATGTGTCATGTGTATGCATTTTGCAAAGCTATTCTTGTTTTTAGTATCCAAATAGAAATACAGAATTCAGTTGGTTC ATTTGTGTTTGTAGTGGTATGATTCTTGCATTGTGCATGATTTGTTTCTTTTTTTGATAGGCAAATGTTAGTTGTTAGAA ATTTTAGTAAATTAGTCCTCAAGGTTCGTGCATGATTTGGTTAACCTTTGGATCTGTGTGGGTTACATCAATGATACTCG TCCGATTATGGTCCAAGTGCTATGTCTGTGCTGTGTTGTTCTAGCATTATCCTTTATTGTACTATTTTATCTTTGTTACT TTGTTCAAATGATTTCTTATCCATTTTCTTTGTATTTTGTCTTTCCTGATAACCCTTTGGATAGATATAGTTGGTTGGAT CAGTGCAATTATATTTTTTTCTAGCACGTTCTTTTTTTCAAATATATCTTATAGAGTTGAAAGAAAACTTTCAGGACATA TTCTCCAATATGCTTTCTTCCTCCACCTTACCCACTCCAGAAATCATGATTGCATTTTGTAGTGGAAAGACTGTCTTTGA GATTCTTGCAGCTTAATATGATCTCAGGTTCAAGCTTTAGTTATGTTTGAGATATATTGCTTCCACCTAATATACTCTCC TTCTGTTTGGCTGCATAGTTTTACCAGAGGGGGGAACGGATTGAGCAAAGTGTTTCAAGGATGATGACAATAATTGATCT TGCCCGAAACATTCGTGAGCGTCATAACAAGCCTCTTAAGACTCCACTCAGGTAGATTAATATGCAAGGATGCTCAAATT TAGATGTTTGTAGACTCATATTTTGCGTTTCATATAATAAATACACTCATATCTTCTTGCTACCGTAGGGAAATGGCGAT AGTGCATCCTGATGCAGACTTTCTTGATGATATAAGTGGAAAGTTGAGGGAGGTACTTGCATGATGTCACTGTTTTACCC TCTGCTTTTTAGCATTTATTCAGCAGTTTTTGTTGTCATTGGATGCATATGATAATAGTTTTCTCCCTGATGCTTATAGT CTGTCACCCTGTTTCCTGTACATTATATAAAGTCTCTAAGAGGTAACTAAACTGACTGTGTTTTTTCTTTGTGATGATAT TATTTATGCGTGTTTTCTAAAAACACACAGAAACCTTTCTAAATTTTTTGACTTTTTATTAAGTTTCTATCATCTTGGAC CAAGACTCTTGTTGTTCTATCTTCGAAGCTCCTTTACCCATTATGCTCTACAAAAGGTTGTGATATTGTTGTGTGTTCTG GAATAAATCTCACAAACTGTGGTGATGAAGGACTACAAGGAGATCAACTAGAGAATTTCGACCATTTTGGTCTTGTCGAT GAATCAGTGCCTTTGTATACAGAGTCTATGCTTTCGCTCCCTGATGTTAGTGGGTGAAATCTATATATATTTAAAATAAA GAAGCTGGTTTTGCGGCCTAGAGGCAATTTAGTAATTCAATATTTCGTTGTACTACATTTCTAATTGGACTATGGTTATT TTAGTAGAAATACAAAATTATTTGTCATAGATTCAATTAGAGTTTGTTGGTTCCATCTGCCTTTTTGCCTTCGAAAACTA TGGTTAGGCACTGAGATTCAATTTTATATTCTTCAAAG
CDS sequence (LotjaGi3g1v0468800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTGAAAACCATAAGCAAATGATGCAAAGGGATGAAGGTTTGATCACTGAAATCCTGTTGAGGTTGCCGGTGAA GTCTCTTGTACGCTTCAAGGCTGTGTGCAAGTTCTGGCGGTCTCTCATATCCGATCCCCACTTTGCAACATCACATTTTG AACGTGCTGCTCCTAGACTCTTGATCCGTACCGATCATGGCATTCGAACCATGGACTTGGAGGAATCACTTCACCCTGAT CGTATTTCTGAACTAATTGATTATGACTTTCCATATACTGTTCCCTATATTGTAGGTTCGTGTAGAGGCTTTCTGCTAAT TGGCTATGATCGAGGTAGAAGTCTCTCTATATGGAATCCATCCACACATGTCCACAAACCATTACCTGTTGACGCCAATG CTTATGAATATGATCATATGTATCCATATGAATATGGATTTGGTTACGATTCATCAAAAGATGACTACCTCGTGGTTCGA GTCCCTGGTGTAAAACCAGGCTCATCTACTAATTTTGCAGATGTGCAGTTTTTCTCATTGAGAACTAATATTTGGAAATA TACTGAGAGTGTTGATTTGCCTTCTTCCTTGGCCTCTACTAAGGGTGCTGATTTACCTACCTTTACCACTGTTCCAGATC ATAGTGTTGGGTTGCTCTTCAACGAGGCCATTCACTGGGTGGCTCAGAACTTCGTGGCTGGTCGTGTGACGCATTTTATC ATTGCCTTTGATTTAATGGAAAAGAGACTTTTAGAGATACCCCAGCCCAAGCCTGATGATCTATTGCCCCAGCCTGATGA TCTATTTCCCCAGGGTTTTCTGTTTTATAGATTGTGGGTGCATGGAAGATTTTTTAGTCTAACGGCTTTCCAGCAAGATA CAATTGAAATATGGGTTATGAAGAAATACAAAGTACAATCATCTTGGACCAAGACTCTTGTTGTTCTGTCTTCGAAGCTC CTTTACCCATTATGTTCTACAAAAGGTGGTGATATTGTTATGTGTTCTGGAATAAATCTCACAAAGTATAGTGATGAAGG ACTACAAGGAGATCAACTAGAGAATTTCGACCATTTTGGTCTTGTCAATGAATCAGTGCCCTTGTATACAGAGTCTATGC TTTCGCTCCCTGATGTTAGTGGGTGA
Protein sequence (LotjaGi3g1v0468800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIENHKQMMQRDEGLITEILLRLPVKSLVRFKAVCKFWRSLISDPHFATSHFERAAPRLLIRTDHGIRTMDLEESLHPD RISELIDYDFPYTVPYIVGSCRGFLLIGYDRGRSLSIWNPSTHVHKPLPVDANAYEYDHMYPYEYGFGYDSSKDDYLVVR VPGVKPGSSTNFADVQFFSLRTNIWKYTESVDLPSSLASTKGADLPTFTTVPDHSVGLLFNEAIHWVAQNFVAGRVTHFI IAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWVHGRFFSLTAFQQDTIEIWVMKKYKVQSSWTKTLVVLSSKL LYPLCSTKGGDIVMCSGINLTKYSDEGLQGDQLENFDHFGLVNESVPLYTESMLSLPDVSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 374 | 365 | 1.1E-78 | – | |
| PANTHER | 10 | 374 | 365 | 1.1E-78 | – | |
| Gene3D | 13 | 48 | 36 | 6.3E-8 | – | |
| Pfam | 16 | 48 | 33 | 2.7E-6 | ||
| SUPERFAMILY | 16 | 101 | 86 | 6.93E-14 | ||
| TIGRFAM | 99 | 336 | 238 | 9.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0468800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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