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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0470900 |
Transcript ID | LotjaGi3g1v0470900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Large subunit GTPase 1; TAIR: AT1G08410.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SJF1|LSG12_ARATH GTPase LSG1-2; TrEMBL-Plants: tr|A0A1J7GZ54|A0A1J7GZ54_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0470900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88673704..88678285) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTTGTAGATAGGGCTGAGTACCTTTGGCTCTTGTAGCTTTGTATCTAGGCTATGCCCGTTTTTCATCTAATGAAATT CCTTACATTAACCCAAAAAAAATTGTCGACTTCGTCATTTATTATTATGCTGCTTAGGCTAGCCTCTTTCTTTTCTTTAT TTAGATTTAGATTTCCTCTTCTGAATGTATTATTTTTAGAGTTTAATGGATATGCACCGAAAGTGCAAAATAGTTTTAAG AAAAAATCTTAAACGTAACCAGAAAGTAGTGAACAAACAAGCCTCCCCCAACACTCTCGTTTTCTAGGGTTTCTGCGTCC TTCGTCTAAGAAGAACACAACAGAGCGGTGAATTAGGGTTTCGAGCTCGCGGAAATGGTGAAGAATCAGAAAGCAGATCT AGGCCGAGCCTTGGTGCGGCAACACAACCAGATGGTGCAGCAAACCAAGGAGAAAGGTCGCTTCTATCGGAAGAAGGTTC TCGAATCCTACACCGAAGTCTCCGATATCGACGCCATCATCGAACAAAACGATGAACCGAATCTCGATTTCCCTCCCTCT GTTGCTCCTCCCACCGTCCTCATCAACCTGTGAGTATCTCGTTCTTTCTTTCTTCTCCGCGTTTCTGTAAACTGTGAATA TTTTCATGATGTTTTCGTTGTTATTGTTGTGGGTTTAGGGACCGAGACTCTGGCTCTAGCGTTGCCACGCCTGAAGAATC GAGGAAGCTGCGGAAGATTGAGGAAGCTCAACATGCTAGCAGTCTCCGAGTTCCACGCAGGTATTTCAATTATTTGTTTT TCTTGAATAATTGAATTGGTTCAATTTTCCATGGTGTGACTCTTTTGTTTTTGTTTGCTCGTTTAGGCCGGCGTGGAGTG CTGAAATGTCCGCGGACCAGCTTCATGCCAATGAAACACAGTCTTTCTTGACCTGGCGTCGCAGCCTAGCGAGGTTGGTT AGTTCCTTAGAGCGTTTATTTGAATTAACTTGAGGCTTGTTACATTGGTTTGGTTAAAAGTGGTTAGAAGTTAGATAGAA TTGCTTTTACTGAAATAACTTTTTAATTAGAAATAATAATATAAAACCATTTATGTGAGCCTTACCCAACAGCTTAAGCT TTTGGGATAATTCGTTGTTTGACAATTTTAACGTGTTTCTGAACATTTTGGAAAATTCTGAAACCTCATTTTAAAGATTG GAAAAGTGGTTTGGGTGCTGCAACACAAGCATACATGCTGTTAGTTTTTGCTCTTATTTCCTTCATGTTCTTTGGTGTGT TTGGGTAAATAGTTTAACTAAGTGTTTTATACAATATCCTTTATTTCAGAAGCTTAATTAACTTCCTATTTCGTGAGTTT ATCTAATAAGCTTATTGGAGTAAGCTTGAAAAAAGTTATTTTTACAAGTTTAAGGAATTATCTATTCAAGTGCTTATGTT ATACCATAAGTCCATGTTTAGTTACAGATTAGCTCATTCAAACGCCGTTTAAATAGGTGTGTGATTGCATGTGTCTGAAT TAGAAGCTGAAGATCAGAGTCAAAGCTGCTGAAAGTTAAAACTCCTTTACAGCTATATGTTTATGCAAAAGTTATGAATT GTTTTCCATACTTTTTTTTGGCAAACAATTGTTTTCCATACTAATTAGCATTATCTTTTAAATAATGATGTGTTAAGTGA TGATGTTAGAAGAATGATGAAAGCTTTGGATATGTTTAAAATTTATATTGCTTGCTTGGTGTTGTTTCAGGCTTGAGGAC AATAAGAGGCTTGTCCTTACTCCGTTTGAGAAAAATCTTGACATCTGGAGACAGCTCTGGCGGGTTGTTGAGCGTAGTGA TTTGGTAAGTTGGTATCCTCTTTGAAGTTTTACCATGAAATATCTACTTTTGGGTTGATCTTTCATTTGGCTTGATACAC AAAAAAGAAGGGAAAATGTCTTTAAACAAGTTTGAAGGATGATCCTAGAAACAAAAGCCTGTTTGAATTTTCAACTTCAA GAAAAAAAAACTCTTGTTGGGCACAATTGATAAAGTCCTGTTTTTATCCCTCTCTAGTTGTACATTCATTCTTTTCTATT ATGTAATTTATGAAAAGCCTATTTTTTTAAAAGCATTTGGATAATTGAAATTTTGTTTTTACAATGATGGTTTTGTATTA TACAGAAATATCAATAGCATAGCAACTATTTTCTGATCTTTGCTCTGTATTGTCTCTAAGTGCATTATATGTTGAAGATG TTCATCTCATTCTCCCGTACTTTTTTACCAGCTTGTTATGGTTGTTGATGCACGAGATCCACTATTCTATCGCTGCCCTG ACCTTGAGGTAAGATGTTATTTTCTCTTGCTTACAACTCTAGAGATGGCTAGATATGTAGAAAGTTTAAGCTCTCTTTTT GTTAGGATCAGATATAGCAGAATCCCTTGTGCTTGATATTCTTTCAAGCAGCTTTAGTCTGGTAACAAAAAAGGCATATC ATCATGTCAGTACCTATTAACTAATAAAAGTGAGAAACATAAGTGGCAATAATGGGGCAGATATCTTATGTCCGGTAATC TGTGCAGCTTAATTTTGGACTCTAATTATTTTGTTTTAACAATTATTCTACTGTGTGCGTCAAACATGACATGTTATGCT TTAATTTTACTCTGGGACAGGCATATGCTAGAGAGGTTGATGAGCATAAGCGCACATTGCTTTTGGTTAACAAGGCAGAT CTTTTACCTGCTTCTATCAGGTTTGGATATGCCAAATATGGTTTTTACTGCATCAAATTATTTCTCTTGATTCTCTATCT TGCGAAGGTCCTTAATATTTATTCTCTGTTTTTTCTTCTCTTTTCCTCAGGGAGAAATGGGCAGAATATTTCCGTGCTCA TGATATTCTCTTCATCTTCTGGTCAGCTAAAGCTGCTACTGCAACTCTGGAAGGCAAAAAGCTTGGTTCATCATGGGAGG CTGATAATTTGGGGAGAACTGATAACCCAGACACAAAGATATATAGAAGAGATGAACTTTTGGGCCGCTTGCAATCAGAG GCAGAAGAGATAGTAGAACGCAGGAGAAATTCAGGCTCCTCTGATACAGGGTCTTCTTCCATTAAGTCCTCTAGTGAAAG TGCTTCTGGTAGTTCACCGTCAAGTAGTGTCACTGTGGGATTTGTTGGATATCCTAATGTGGGTAAGAGTTCAACTATCA ATGCTTTGGTTGGTGGAAAGAAGACTGGTGTCACGTCTACCCCAGGGAAAACAAAGCACTTTCAGACATTAATTATTTCT GACAAACTGACCCTTTGTGATTGTCCCGGATTAGTTTTTCCATCTTTCTCAAGCTCAAGATACGAGATGATTGCTTGTGG GGTGTTGCCTATTGATAGGATGACTGAACACAGGGAAGCTGTCCAAGTTGTAGCTGATAGAGTTCCAAGACATGTCATAG AGGGGGTTTATAAGATCACTCTTCCTAAACCCAAGTCATACGAGTCCCAATCCCTCCCCCCTCTTGCATCTGAACTCTTG AGAGTATACTGTGCTTCTCGTGGGTATGTCGCCTCTAGTGGACTGCCTGATGAAACTAAGGCTGCTCGTCAGATACTGAA AGATTACATTGATGGGAAGGTGCCGCACTATGAAATGCCCCCTGGTGTGTCGAGTGAGGAACAAGCTTTGGAAGATCCCA CTGGACATGACTCAGATGACTTGCACGACTCGGATTTGTCTGGTATTGAAGATTCTTTGGACGGTGAGAGTGAACAAGCT CCAAATCTTGAACACGTATTGGATGACCTCAAATCATTTGACCTGGCTAATGGAATTGCTTCACAGAAAGTTACTAAGAA GTCAAAGGCACCTCATAAACAGCATAAAAAGCCCCCGAGGCAAAAAAGTCATTCTTGGAGAGCAGGGAATGACGGTACTG ATGGGACGCCAATTGCAAGATTCTTTCAGAAACCAGCTAATACTGGTCCAGTGAAGGTTTGATAAGGCCATGCCCTCTTG TTTTTCTGCAAAACCTTGTCTGTTAGACCCATACACACATAGTTATAGTTACTCTGAGGTGAACTATAAATAATGTTTGC GTGTAAGTTGTAAAGCGTTGCGGAGATAAATGATGGAGGCATCGCAATTCCACTGAAGATCCTCCTAAGAAGGGGAAGGT GTTTGTGAAAATATCGTGTATTCACATTAATGAGTTAATGTTTTTATTAATGGGATGAAAATGATGTCATTTGTTTGGCA AATTGGTTACTCTCATAAGTCTGTGAAGCCATTTCTGTGTTTTCTCCATACTTATGTGCAAGCCGATGCATACCTCGTGG CATGCATAAAAGAATAATTGAATTCCGCCGGAAATTGAAGTATTTGACTGGAGAATTTGTGGTTATCTTGTGATGTAACA GGACGAAATGAATCTTATTGTGATGGAATGGAATAGTCAATAGAATGTAGCAGAGACAAATGAAGCTATTTTTTATTTTT ATTGTTAGGGCTTTGAATTTTTTTATGATATTATCTCCATTTCTATTTATCTCTTCAGCGAGAGAAGAAAGTACACGGAT TAAAGATTTTTTTTTTACACAG
CDS sequence (LotjaGi3g1v0470900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGAATCAGAAAGCAGATCTAGGCCGAGCCTTGGTGCGGCAACACAACCAGATGGTGCAGCAAACCAAGGAGAA AGGTCGCTTCTATCGGAAGAAGGTTCTCGAATCCTACACCGAAGTCTCCGATATCGACGCCATCATCGAACAAAACGATG AACCGAATCTCGATTTCCCTCCCTCTGTTGCTCCTCCCACCGTCCTCATCAACCTGGACCGAGACTCTGGCTCTAGCGTT GCCACGCCTGAAGAATCGAGGAAGCTGCGGAAGATTGAGGAAGCTCAACATGCTAGCAGTCTCCGAGTTCCACGCAGGCC GGCGTGGAGTGCTGAAATGTCCGCGGACCAGCTTCATGCCAATGAAACACAGTCTTTCTTGACCTGGCGTCGCAGCCTAG CGAGGCTTGAGGACAATAAGAGGCTTGTCCTTACTCCGTTTGAGAAAAATCTTGACATCTGGAGACAGCTCTGGCGGGTT GTTGAGCGTAGTGATTTGCTTGTTATGGTTGTTGATGCACGAGATCCACTATTCTATCGCTGCCCTGACCTTGAGGCATA TGCTAGAGAGGTTGATGAGCATAAGCGCACATTGCTTTTGGTTAACAAGGCAGATCTTTTACCTGCTTCTATCAGGGAGA AATGGGCAGAATATTTCCGTGCTCATGATATTCTCTTCATCTTCTGGTCAGCTAAAGCTGCTACTGCAACTCTGGAAGGC AAAAAGCTTGGTTCATCATGGGAGGCTGATAATTTGGGGAGAACTGATAACCCAGACACAAAGATATATAGAAGAGATGA ACTTTTGGGCCGCTTGCAATCAGAGGCAGAAGAGATAGTAGAACGCAGGAGAAATTCAGGCTCCTCTGATACAGGGTCTT CTTCCATTAAGTCCTCTAGTGAAAGTGCTTCTGGTAGTTCACCGTCAAGTAGTGTCACTGTGGGATTTGTTGGATATCCT AATGTGGGTAAGAGTTCAACTATCAATGCTTTGGTTGGTGGAAAGAAGACTGGTGTCACGTCTACCCCAGGGAAAACAAA GCACTTTCAGACATTAATTATTTCTGACAAACTGACCCTTTGTGATTGTCCCGGATTAGTTTTTCCATCTTTCTCAAGCT CAAGATACGAGATGATTGCTTGTGGGGTGTTGCCTATTGATAGGATGACTGAACACAGGGAAGCTGTCCAAGTTGTAGCT GATAGAGTTCCAAGACATGTCATAGAGGGGGTTTATAAGATCACTCTTCCTAAACCCAAGTCATACGAGTCCCAATCCCT CCCCCCTCTTGCATCTGAACTCTTGAGAGTATACTGTGCTTCTCGTGGGTATGTCGCCTCTAGTGGACTGCCTGATGAAA CTAAGGCTGCTCGTCAGATACTGAAAGATTACATTGATGGGAAGGTGCCGCACTATGAAATGCCCCCTGGTGTGTCGAGT GAGGAACAAGCTTTGGAAGATCCCACTGGACATGACTCAGATGACTTGCACGACTCGGATTTGTCTGGTATTGAAGATTC TTTGGACGGTGAGAGTGAACAAGCTCCAAATCTTGAACACGTATTGGATGACCTCAAATCATTTGACCTGGCTAATGGAA TTGCTTCACAGAAAGTTACTAAGAAGTCAAAGGCACCTCATAAACAGCATAAAAAGCCCCCGAGGCAAAAAAGTCATTCT TGGAGAGCAGGGAATGACGGTACTGATGGGACGCCAATTGCAAGATTCTTTCAGAAACCAGCTAATACTGGTCCAGTGAA GGTTTGA
Protein sequence (LotjaGi3g1v0470900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKNQKADLGRALVRQHNQMVQQTKEKGRFYRKKVLESYTEVSDIDAIIEQNDEPNLDFPPSVAPPTVLINLDRDSGSSV ATPEESRKLRKIEEAQHASSLRVPRRPAWSAEMSADQLHANETQSFLTWRRSLARLEDNKRLVLTPFEKNLDIWRQLWRV VERSDLLVMVVDARDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPASIREKWAEYFRAHDILFIFWSAKAATATLEG KKLGSSWEADNLGRTDNPDTKIYRRDELLGRLQSEAEEIVERRRNSGSSDTGSSSIKSSSESASGSSPSSSVTVGFVGYP NVGKSSTINALVGGKKTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHREAVQVVA DRVPRHVIEGVYKITLPKPKSYESQSLPPLASELLRVYCASRGYVASSGLPDETKAARQILKDYIDGKVPHYEMPPGVSS EEQALEDPTGHDSDDLHDSDLSGIEDSLDGESEQAPNLEHVLDDLKSFDLANGIASQKVTKKSKAPHKQHKKPPRQKSHS WRAGNDGTDGTPIARFFQKPANTGPVKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 555 | 554 | 6.1E-245 | ||
PANTHER | 2 | 555 | 554 | 6.1E-245 | – | |
SUPERFAMILY | 152 | 422 | 271 | 5.03E-37 | ||
CDD | 153 | 369 | 217 | 1.77112E-76 | – | |
ProSiteProfiles | 154 | 369 | 216 | 39.284 | ||
MobiDBLite | 279 | 311 | 33 | - | – | |
MobiDBLite | 286 | 311 | 26 | - | – | |
PRINTS | 314 | 334 | 21 | 5.3E-6 | ||
Pfam | 314 | 370 | 57 | 2.8E-14 | ||
PRINTS | 360 | 375 | 16 | 5.3E-6 | ||
MobiDBLite | 471 | 514 | 44 | - | – | |
MobiDBLite | 485 | 504 | 20 | - | – | |
MobiDBLite | 535 | 588 | 54 | - | – | |
MobiDBLite | 541 | 558 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0470900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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