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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0471400 |
| Transcript ID | LotjaGi3g1v0471400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT3G11840.1 E3 ubiquitin-protein ligase PUB24-like protein; Swiss-Prot: sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24; TrEMBL-Plants: tr|A0A0S3SC67|A0A0S3SC67_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0471400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88770856..88772801) extracted from Lotus japonicus Gifu genome v1.2.
TTCATCTAGAATCATATAAATATTATATATATATCTGTATATTATACACACAATCTCTTCAAACCTTCAGATTTATAAAG CCGCATTCTCTTACCAAAAACAATAACCTCTCATTTTCTTCTTCTTCTTCTTCTGTATCTTCTTTCTGTTCAATCAACCA TACCATTTTGTTTCATTCAATGACAGAAATTGAAATTCCTCAATATTATGTATGTCCAATTTCGTTTCAGCTCATGAAGG ATCCTGTGACAGCCGTTACCGGCATAACATACGACAGAGAAAGCATCGAGCAATGGTTGCAGAAAGCCAGAGATTGCGTG TGCCCAGTTACCAAACAACCACTTCCTAGAAGCTCACAATATTTGACTCCAAATCACACGCTAAGAAGGTTGATTCAAGC ATGGTGTTCATCAAATTCAACCAACGGTGTAGATCAAATTCCAACCCCAAAAACTCCTATTGAGAAGTCCCACATTGAGA AACTTGTGAAGGATCTTGAGGTCCCTCGGTTATATAAAGCAGCACTAGAGAAATTGCGTGAGTTTGCTACAGAAAGTGAG AGAAACAGAACAAGCATGGCTGAAACAGGAGTAGTGAAAGGTGTGGTGAAGTTGATAAACAAGAATTTCAAGGAAGGAAG GAGAACAATTTTCCTAGAAGAAGCTTTGAGAATTGTTCATCTTCTATGGAATGTTCCAACCATGTCTTACAGCATGAAGA ATTTGGTTGGAACAAACATGGACTTCATCAATTCCTTGACTTGGATTGTGCTGCTTCACATGGAGAAAAACGTGAAGATG GTCAACGAAGCAATGCCCCTTTTGAAATTGACAATTGAAGTCGCAAATTCAACTCTGGTAGCGAATTTAGACTCTGGATT CTTCACAGGAATGGTGAATGTGTTGAGAAAAAGAGCACTCTCTCAACAAGCTATCAAATCAGCTTTACACATCCTCGTCC AAACGTGCCCTTTGGGTAGAAACAGAACAAGGATCGTGGAAGCAGGGGCAGTGACAGAGCTCATTGAGCTCGAGCTTGAA AAGCCAGAGAAGAACATCTCAGAGCTCATATTCAACCTTCTTGCACATCTATGTTCTTGTGCTGATGGAAGGGAACATTT TCTTCGCCACGCGGCGGGCATCGCGGTGGTTTCGAAGAGGATTCTGAGGGTTTCTCCTGGAACTGATGACAGAGCAGTAC ATATACTTGGAATCATTGCGAGATACTCGCAATCCAAAGAGTTTGTTCAAGAGATGTTGAGAGTTGGAGCAGTGTCGAAG CTTTGCATGGTGATGCAAGCGGATTGTGCTTCTTATTTGAAAGAAAAAGCAAGAGATATTCTTAGGTTGCACTCGACAGC TTGGAATAATTCTCCTTGTATACAATTGTATTTGTTTACTAGGCACCAAAGGTGATCTCATACACATAGGACAATCATAA CTTTACAAACATTTTCAATTTTATAGTTGATGAGTTACACATTAAGATGTACAAAACAGAAATAACCACTTGTTAAGTAC AAAGGAAACTAATATTTTTTGGTGCTTGCTACGATACCACAATACTTGTGTGGGTATGATATACGAAAAGGTTGTGGACC AATCACATCCTCCGTATTTAAAAAGAAAAAAATGAAAATATAAATTATTTTTGTTGTGGACCAATCACATCCTTCATGTA TGATACATTGTGGGTATCATAGAAACCACCATATTTTTTTCATCCCATTTGGTATTTGTATTGTTAAATCATCAAGTGTA TATGAAGAAAGGAACTATTTCTTGACCTCTCTTAAATCAGGAAACTTGTTGAGTTTAATATATGGCTGTTTTGGAAATTA TTTTACAAATGATATTATCAAAATTAGAAGAAGCTTTATAACAGATTGTAATCCTCCATAATAAAAAATATGAGGCAGTT TTGTTGAATAAAACGGCGTGTTGAAC
CDS sequence (LotjaGi3g1v0471400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAATTGAAATTCCTCAATATTATGTATGTCCAATTTCGTTTCAGCTCATGAAGGATCCTGTGACAGCCGTTAC CGGCATAACATACGACAGAGAAAGCATCGAGCAATGGTTGCAGAAAGCCAGAGATTGCGTGTGCCCAGTTACCAAACAAC CACTTCCTAGAAGCTCACAATATTTGACTCCAAATCACACGCTAAGAAGGTTGATTCAAGCATGGTGTTCATCAAATTCA ACCAACGGTGTAGATCAAATTCCAACCCCAAAAACTCCTATTGAGAAGTCCCACATTGAGAAACTTGTGAAGGATCTTGA GGTCCCTCGGTTATATAAAGCAGCACTAGAGAAATTGCGTGAGTTTGCTACAGAAAGTGAGAGAAACAGAACAAGCATGG CTGAAACAGGAGTAGTGAAAGGTGTGGTGAAGTTGATAAACAAGAATTTCAAGGAAGGAAGGAGAACAATTTTCCTAGAA GAAGCTTTGAGAATTGTTCATCTTCTATGGAATGTTCCAACCATGTCTTACAGCATGAAGAATTTGGTTGGAACAAACAT GGACTTCATCAATTCCTTGACTTGGATTGTGCTGCTTCACATGGAGAAAAACGTGAAGATGGTCAACGAAGCAATGCCCC TTTTGAAATTGACAATTGAAGTCGCAAATTCAACTCTGGTAGCGAATTTAGACTCTGGATTCTTCACAGGAATGGTGAAT GTGTTGAGAAAAAGAGCACTCTCTCAACAAGCTATCAAATCAGCTTTACACATCCTCGTCCAAACGTGCCCTTTGGGTAG AAACAGAACAAGGATCGTGGAAGCAGGGGCAGTGACAGAGCTCATTGAGCTCGAGCTTGAAAAGCCAGAGAAGAACATCT CAGAGCTCATATTCAACCTTCTTGCACATCTATGTTCTTGTGCTGATGGAAGGGAACATTTTCTTCGCCACGCGGCGGGC ATCGCGGTGGTTTCGAAGAGGATTCTGAGGGTTTCTCCTGGAACTGATGACAGAGCAGTACATATACTTGGAATCATTGC GAGATACTCGCAATCCAAAGAGTTTGTTCAAGAGATGTTGAGAGTTGGAGCAGTGTCGAAGCTTTGCATGGTGATGCAAG CGGATTGTGCTTCTTATTTGAAAGAAAAAGCAAGAGATATTCTTAGGTTGCACTCGACAGCTTGGAATAATTCTCCTTGT ATACAATTGTATTTGTTTACTAGGCACCAAAGGTGA
Protein sequence (LotjaGi3g1v0471400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEIEIPQYYVCPISFQLMKDPVTAVTGITYDRESIEQWLQKARDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWCSSNS TNGVDQIPTPKTPIEKSHIEKLVKDLEVPRLYKAALEKLREFATESERNRTSMAETGVVKGVVKLINKNFKEGRRTIFLE EALRIVHLLWNVPTMSYSMKNLVGTNMDFINSLTWIVLLHMEKNVKMVNEAMPLLKLTIEVANSTLVANLDSGFFTGMVN VLRKRALSQQAIKSALHILVQTCPLGRNRTRIVEAGAVTELIELELEKPEKNISELIFNLLAHLCSCADGREHFLRHAAG IAVVSKRILRVSPGTDDRAVHILGIIARYSQSKEFVQEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSTAWNNSPC IQLYLFTRHQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 408 | 408 | 1.0E-174 | – | |
| PANTHER | 1 | 408 | 408 | 1.0E-174 | – | |
| Gene3D | 1 | 87 | 87 | 2.1E-27 | ||
| SUPERFAMILY | 3 | 83 | 81 | 1.12E-25 | – | |
| ProSiteProfiles | 5 | 82 | 78 | 36.039 | ||
| Pfam | 6 | 80 | 75 | 6.2E-20 | ||
| SMART | 9 | 75 | 67 | 4.8E-26 | ||
| SUPERFAMILY | 109 | 389 | 281 | 1.94E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0471400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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